rna79, rna79 (mRNA) Nannochloropsis gaditana

Overview
Namerna79
Unique Namerna79
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length558
Alignment locationCM002455.1:220209..222037 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100033g3.8393.mrna
Orig protein idgnl|cribi|Naga_100033g3.8393
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:220209..222037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g3gene77Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna79rna79-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30554.1cds79Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna79 ID=rna79|Name=rna79|organism=Nannochloropsis gaditana|type=mRNA|length=558bp
TAACATGCCAATTGCACATATGCACGTATGTACCGGATGAAAATGCGATA
GCCCAACCCGTCACAATCTGCCGCACAGGGACGGTGACCACAATTCAGCT
CAAATAAAAAGAGCAACTTCTAGTCAGTGCCTTGCTTGCTTCAAGCCAGA
AGGCGCGAGAAGGACTAGGGCGGCCTTCCTTTCTAATTATGATGGATCAT
TTCATAATTGAACAATGCAAACCGTTTTTAAAGTGCAGATTATGTACAGA
AATGACGTGATACGTGGATTCCAGTCATTTTTCGGGACTGCCCGGTTGCA
TAGCTGCCAAGTGCCATCCGACATTGAGCTTCGTCCATACACTCAGTATA
AGCTTTCGGGGGATGAGAACGCCAAATCGGTTCATCGGAGCTCAAGGACA
TTCTCGAATCAAAGTTTAAGCCCTTTGCTGTATGAGCACAGTATCTGAAA
ATGGTGACGAAGGGACATGTGTGCGTTGGATGGCAGACAATGATGTAATC
ATCGTGAACTTTGAGGCAATCTTAGCACCGATGGCAAAAAAAACGATGGG
AAAATACC
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protein sequence of rna79

>rna79-protein ID=rna79-protein|Name=rna79|organism=Nannochloropsis gaditana|type=polypeptide|length=353bp
MRYQLKNMHFVPCYFSLLFYFRSGEVVRHPFPRSTSGMDGKANKDSTELC
RRRKEEQLGQDRARDKEAAENGDALGEEEEILVMVDLPEYAGVALFEEAE
SIEIKNIAGPGAPELVVNGVRNFKGHYEDPLGSSLIVNDHRIDHTCIRQG
ARKKGRPRSESLEEELREKEKNFTGEGLGGKEICGEEVGNDGRRSWKGAR
RELWNGRDRGKERVERNCEGTGERDDGGRKEQGEMEPAALSIASKVLVFL
EERHSRGSALMDQDGMSRRRERKGAWDTRGEQGNERDGTEEEEVGREEED
EEGREEEEAGGEAEDEEEDDEDYDDEEDNEDNEDDDDDDEDGEVAEEEED
EDD
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mRNA from alignment at CM002455.1:220209..222037+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna79 ID=rna79|Name=rna79|organism=Nannochloropsis gaditana|type=mRNA|length=1829bp|location=Sequence derived from alignment at CM002455.1:220209..222037+ (Nannochloropsis gaditana)
CGGCAGATTGTGACGGGTTGGGCTATCGCATTTTCATCCGGTACATACGT
GCATATGTGCAATTGGCATGTTATTTTTATTTTGGCATGACTAGCATTGG
CTGTGTTGTACCGACGGCGGGACCTCCCCGCTGCGGCACAGATAGTACCG
TCATGCTTGCTTTATGCGCTACCAGCTGAAAAATATGCATTTCGTTCCTT
GTTATTTCTCGCTACTATTCTACTTCAGGAGCGGTGAAGTGGTGAGGCAT
CCCTTCCCACGAAGCACTAGTGGTATGGATGGAAAGGCAAACAAAGACTC
AACGGAGCTATGTCGTCGGCGAAAGGAAGAACAATTGGGTCAGGACAGAG
CGCGTGATAAAGAAGCCGCAGAAAACGGGGATGCactgggagaagaggag
gagatatTGGTGATGGTAGACTTGCCTGAATACGCTGGCGTTGCTTTATT
CGAAGAGGCGGAGTCCATTGAGATcaaggtaggaggggaggacggagtTG
GGTAGTATGAAAATAGGTTATATTCAGTGGTGTGGTTCGACCACATCAGC
ACACACCTCCTCATCTGGGTGATTTCCTGTCCTCTATGTTGTATATGCCT
CGTCTCTAAGAACTGTGCATCGAGGAGTGAGCCGTCTTCATCAAACCCAT
CAGACTCCTCGACAGATttctgcttctttctttccttaatttccttttct
ttggGTTCCCGTGTTCTCCTAGGATTGCGCCCAATGCTTTTTCGCCCTGT
CCCACCTATCCCCCCACGCTCCCGTAGTTCAATCCTCCcgttacctccct
cctccacttctaTCACAGAATATTGCAGGACCCGGCGCTCCCGAATTGGT
TGTGAATGGCGTTCGCAATTTCAAAGGCCACTACGAAGATCCGCTGGGCT
CGAGCTTGATCGTAAATGACCACCGCATCGACCATACCTGCATTCGGCAG
GGCGCGCGAAAAAAGGGGCGGCCACGGAGTGAGAGCTTGGAGGAAGAATt
gcgagagaaggagaagaactTCACTGGCGAGGGgctaggagggaaggaaa
tttGCGGGGAAGAAGTGGGAAATGACGGGCGAAGAAGTTGGAAGGGTGCT
AGGAGGGAGTTATGGAACGGGAGGGATagaggcaaagaaagggtggagag
gaattgtgagggaacgggagagagggacgatgGTGGCAGGAAAGAGCAGG
GGGAAATGGAGCCTGCAGCACTTTCAATAGCTTCGAAGGTCTTGGTATTT
TTGGAGGAGAGACACAGCAGAGGCAGCGCATTGATGGATCAGGATGGGAT
gtcaaggaggcgggagcggaAAGGAGCTTGGGATACGAGAGGTGAACAGG
GAAACGAAAGAGatgggacagaggaggaagaagtgggaagagaagaggag
gacgaggaggggagagaggaagaggaggccgggggggaggcggaggatga
agaagaagatgatgaagACTACGATGATGAAGAAGACAATGAAGACAATG
AAGACGATGAtgacgacgacgaagatggagaggtggctgaggaggaggag
gacgaggacgactaGGAAGACGCGTCAACAGGTATAGGTGCAGACAACGC
GAGAAACCCATGTATATATGTATGTTAAAGGTAACATCTCCACCCTGCAT
ATGTCACGTCATTTACTGACGCCAACAAAAGGAATTGCTTGCATTGACGA
ACATTACTACAATTGGACCTACATCCATCCAGCTTTGTAAACCTGCAAGC
TTGGAGATTACTTTTTAACTTGCAGCAAATCAtagtgggagaggaggtta
gtAATGCAATATAGCAATTTATCAACTGT
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Coding sequence (CDS) from alignment at CM002455.1:220209..222037+

>rna79 ID=rna79|Name=rna79|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at CM002455.1:220209..222037+ (Nannochloropsis gaditana)
ATGCGCTACCAGCTGAAAAATATGCATTTCGTTCCTTGTTATTTCTCGCT
ACTATTCTACTTCAGGAGCGGTGAAGTGGTGAGGCATCCCTTCCCACGAA
GCACTAGTGGTATGGATGGAAAGGCAAACAAAGACTCAACGGAGCTATGT
CGTCGGCGAAAGGAAGAACAATTGGGTCAGGACAGAGCGCGTGATAAAGA
AGCCGCAGAAAACGGGGATGCactgggagaagaggaggagatatTGGTGA
TGGTAGACTTGCCTGAATACGCTGGCGTTGCTTTATTCGAAGAGGCGGAG
TCCATTGAGATcaagAATATTGCAGGACCCGGCGCTCCCGAATTGGTTGT
GAATGGCGTTCGCAATTTCAAAGGCCACTACGAAGATCCGCTGGGCTCGA
GCTTGATCGTAAATGACCACCGCATCGACCATACCTGCATTCGGCAGGGC
GCGCGAAAAAAGGGGCGGCCACGGAGTGAGAGCTTGGAGGAAGAATtgcg
agagaaggagaagaactTCACTGGCGAGGGgctaggagggaaggaaattt
GCGGGGAAGAAGTGGGAAATGACGGGCGAAGAAGTTGGAAGGGTGCTAGG
AGGGAGTTATGGAACGGGAGGGATagaggcaaagaaagggtggagaggaa
ttgtgagggaacgggagagagggacgatgGTGGCAGGAAAGAGCAGGGGG
AAATGGAGCCTGCAGCACTTTCAATAGCTTCGAAGGTCTTGGTATTTTTG
GAGGAGAGACACAGCAGAGGCAGCGCATTGATGGATCAGGATGGGATgtc
aaggaggcgggagcggaAAGGAGCTTGGGATACGAGAGGTGAACAGGGAA
ACGAAAGAGatgggacagaggaggaagaagtgggaagagaagaggaggac
gaggaggggagagaggaagaggaggccgggggggaggcggaggatgaaga
agaagatgatgaagACTACGATGATGAAGAAGACAATGAAGACAATGAAG
ACGATGAtgacgacgacgaagatggagaggtggctgaggaggaggaggac
gaggacgactaGATGCGCTACCAGCTGAAAAATATGCATTTCGTTCCTTG
TTATTTCTCGCTACTATTCTACTTCAGGAGCGGTGAAGTGGTGAGGCATC
CCTTCCCACGAAGCACTAGTGGTATGGATGGAAAGGCAAACAAAGACTCA
ACGGAGCTATGTCGTCGGCGAAAGGAAGAACAATTGGGTCAGGACAGAGC
GCGTGATAAAGAAGCCGCAGAAAACGGGGATGCactgggagaagaggagg
agatatTGGTGATGGTAGACTTGCCTGAATACGCTGGCGTTGCTTTATTC
GAAGAGGCGGAGTCCATTGAGATcaagAATATTGCAGGACCCGGCGCTCC
CGAATTGGTTGTGAATGGCGTTCGCAATTTCAAAGGCCACTACGAAGATC
CGCTGGGCTCGAGCTTGATCGTAAATGACCACCGCATCGACCATACCTGC
ATTCGGCAGGGCGCGCGAAAAAAGGGGCGGCCACGGAGTGAGAGCTTGGA
GGAAGAATtgcgagagaaggagaagaactTCACTGGCGAGGGgctaggag
ggaaggaaatttGCGGGGAAGAAGTGGGAAATGACGGGCGAAGAAGTTGG
AAGGGTGCTAGGAGGGAGTTATGGAACGGGAGGGATagaggcaaagaaag
ggtggagaggaattgtgagggaacgggagagagggacgatgGTGGCAGGA
AAGAGCAGGGGGAAATGGAGCCTGCAGCACTTTCAATAGCTTCGAAGGTC
TTGGTATTTTTGGAGGAGAGACACAGCAGAGGCAGCGCATTGATGGATCA
GGATGGGATgtcaaggaggcgggagcggaAAGGAGCTTGGGATACGAGAG
GTGAACAGGGAAACGAAAGAGatgggacagaggaggaagaagtgggaaga
gaagaggaggacgaggaggggagagaggaagaggaggccgggggggaggc
ggaggatgaagaagaagatgatgaagACTACGATGATGAAGAAGACAATG
AAGACAATGAAGACGATGAtgacgacgacgaagatggagaggtggctgag
gaggaggaggacgaggacgactaG
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Synonyms
Publications