rna7899, rna7899 (mRNA) Nannochloropsis gaditana

Overview
Namerna7899
Unique Namerna7899
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length288
Alignment locationKK037247.1:56765..57955 +

Link to JBrowse

Properties
Property NameValue
Productseptin 7
Orig transcript idgnl|cribi|Naga_102069g1.1325.mrna
Orig protein idgnl|cribi|Naga_102069g1.1325
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:56765..57955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102069g1gene7651Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7899rna7899-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22796.1cds7877Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7899 ID=rna7899|Name=rna7899|organism=Nannochloropsis gaditana|type=mRNA|length=288bp
ATGGAGCGCGTGCATTACACCATCCAGGACACGCCCGGTTTCGGCGACGA
CACGGATATAGCCCGGTCGATTGAGCTAATTATCAAGTACATCGATGGAT
GCAATCAGGTGCTTGTCCTTCCTTTTCCTCCCCCCCTTCCTCCCTCCCTC
CCCCCCTCTACCTCGGTGTTCAAGCCGCTACCTAGAGGCCGAGGAGGACC
CCCACCGCACCTGCCCCCTCGGGAAAATGACCGGAGGAGACGCGCGGGTG
GATGTATGCCTCTATTTCCTGGCTGCGCATCGACTTAA
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protein sequence of rna7899

>rna7899-protein ID=rna7899-protein|Name=rna7899|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MTAEETLAFRSFVFEACQHHAIRLFDFGSEAKRRVGIPTDLVAPPFAVVA
SNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLR
QATEERYMAYRCSYYQEKEEEARASRAKAEKQRQFGWLLVAVLLLMGAAH
AVFARLAGREGGRDGG
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mRNA from alignment at KK037247.1:56765..57955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7899 ID=rna7899|Name=rna7899|organism=Nannochloropsis gaditana|type=mRNA|length=1191bp|location=Sequence derived from alignment at KK037247.1:56765..57955+ (Nannochloropsis gaditana)
TTGGAACATTACATCACCTCCTGCCTTGTCTGCGCTTTCTCCGCTCTCTT
TGTTATCCCCTGTCTCGTGTAAAACTgattttccctttccccctatccgc
tcccctcccttctctccccccccttctccctccctccctcccacccacag
GCGATCTCCGCCAAGATCGctctcatccccctcctcgccaagGCGGACAG
CATGACGGCCGAAGAGACCTTGGCGTTTCGATCTTTTGTTTTTGAGGCCT
GCCAACATCATGCCATCCGGCTCTTCGACTTCGGGTCTGAGGCCAAGCGA
CGTGTGGGGATTCCCACCGATTTGGTGGCCCCGCCCTTTGCGGTCGTTGC
CTCCAATCAATTCGACGAGGTGTCtactttcttccctccttcccatccct
ccctcgattccttctgcctcctctctttgccctccccttgagtcctcttt
cctgccGCGCTTGCCCCCGTACCTTGATTTCCTCGCTCTTGAATACTCTT
AACCTCGACTTCACatggcttccctccctcccttcctccttctcttctct
ttctccttccttcctctcttccttctctctctctctcttcctctcttcct
tcctttctccctccctttcttcctccctccgttcctccctccctccctcc
ctccctccctcaggtcaAGGGAAGCGGCTCCTTCTGGCCTGTCCGCGACT
ACCATTGGGGCACCTGCGAAGCTTTCTCCACGGAACATTCCGATTGCACT
TACCTTAAGAAGCTTCTGCTGGAGGTATCCAAGAGCGTcgtgtccctcct
tccacgccctttcgccccccccccctcctgcttggCCTCAAGCCTAGTGC
AACACCTCTCCTCTcagtcctcgctcccttcttttcggAGATGCGTCCTG
GGAGAACTTGACACGCcgtgaccctccctccctccctttctccctccttc
ccttcctccctccctcctttagGAGGGTTTCCACGACCTGCGCCAGGCAA
CGGAAGAGCGGTACATGGCGTATCGGTGCTCGTACTaccaggaaaaagag
gaggaagcacgaGCCAGCCGTGCCAAGGCCGAAAAACAGCGCCAATTCGG
TTGGCTCCTCGTGGCGGTGCTCCTACTTATGGGGGCAGCCCACGCGGTTT
TCGCGCGTctggcagggcgggagggagggcgggatggagga
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Coding sequence (CDS) from alignment at KK037247.1:56765..57955+

>rna7899 ID=rna7899|Name=rna7899|organism=Nannochloropsis gaditana|type=CDS|length=1494bp|location=Sequence derived from alignment at KK037247.1:56765..57955+ (Nannochloropsis gaditana)
ATGACGGCCGAAGAGACCTTGGCGTTTCGATCTTTTGTTTTTGAGGCCTG
CCAACATCATGCCATCCGGCTCTTCGACTTCGGGTCTGAGGCCAAGCGAC
GTGTGGGGATTCCCACCGATTTGGTGGCCCCGCCCTTTGCGGTCGTTGCC
TCCAATCAATTCGACGAGgtcaAGGGAAGCGGCTCCTTCTGGCCTGTCCG
CGACTACCATTGGGGCACCTGCGAAGCTTTCTCCACGGAACATTCCGATT
GCACTTACCTTAAGAAGCTTCTGCTGGAGGAGGGTTTCCACGACCTGCGC
CAGGCAACGGAAGAGCGGTACATGGCGTATCGGTGCTCGTACTaccagga
aaaagaggaggaagcacgaGCCAGCCGTGCCAAGGCCGAAAAACAGCGCC
AATTCGGTTGGCTCCTCGTGGCGGTGCTCCTACTTATGGGGGCAGCCCAC
GCGGTTTTCGCGCGTctggcagggcgggagggagggcgggatggaggaAT
GACGGCCGAAGAGACCTTGGCGTTTCGATCTTTTGTTTTTGAGGCCTGCC
AACATCATGCCATCCGGCTCTTCGACTTCGGGTCTGAGGCCAAGCGACGT
GTGGGGATTCCCACCGATTTGGTGGCCCCGCCCTTTGCGGTCGTTGCCTC
CAATCAATTCGACGAGgtcaAGGGAAGCGGCTCCTTCTGGCCTGTCCGCG
ACTACCATTGGGGCACCTGCGAAGCTTTCTCCACGGAACATTCCGATTGC
ACTTACCTTAAGAAGCTTCTGCTGGAGGAGGGTTTCCACGACCTGCGCCA
GGCAACGGAAGAGCGGTACATGGCGTATCGGTGCTCGTACTaccaggaaa
aagaggaggaagcacgaGCCAGCCGTGCCAAGGCCGAAAAACAGCGCCAA
TTCGGTTGGCTCCTCGTGGCGGTGCTCCTACTTATGGGGGCAGCCCACGC
GGTTTTCGCGCGTctggcagggcgggagggagggcgggatggaggaATGA
CGGCCGAAGAGACCTTGGCGTTTCGATCTTTTGTTTTTGAGGCCTGCCAA
CATCATGCCATCCGGCTCTTCGACTTCGGGTCTGAGGCCAAGCGACGTGT
GGGGATTCCCACCGATTTGGTGGCCCCGCCCTTTGCGGTCGTTGCCTCCA
ATCAATTCGACGAGgtcaAGGGAAGCGGCTCCTTCTGGCCTGTCCGCGAC
TACCATTGGGGCACCTGCGAAGCTTTCTCCACGGAACATTCCGATTGCAC
TTACCTTAAGAAGCTTCTGCTGGAGGAGGGTTTCCACGACCTGCGCCAGG
CAACGGAAGAGCGGTACATGGCGTATCGGTGCTCGTACTaccaggaaaaa
gaggaggaagcacgaGCCAGCCGTGCCAAGGCCGAAAAACAGCGCCAATT
CGGTTGGCTCCTCGTGGCGGTGCTCCTACTTATGGGGGCAGCCCACGCGG
TTTTCGCGCGTctggcagggcgggagggagggcgggatggagga
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Synonyms
Publications