EWM22796.1, cds7877 (CDS) Nannochloropsis gaditana

Overview
NameEWM22796.1
Unique Namecds7877
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:56966..57133 +
Alignment locationKK037247.1:57428..57538 +
Alignment locationKK037247.1:57737..57955 +

Link to JBrowse

Properties
Property NameValue
End range.
End range57955
Protein idEWM22796.1
Productseptin 7
Partialtrue
Orig transcript idgnl|cribi|Naga_102069g1.1325.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:56966..57133 +
KK037247.1supercontigKK037247.1:57428..57538 +
KK037247.1supercontigKK037247.1:57737..57955 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR030379G_SEPTIN_dom
Homology
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|585103417|gb|EWM22796.1| (septin 7, partial [Nannochloropsis gaditana])

HSP 1 Score: 343.584 bits (880), Expect = 1.260e-119
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MTAEETLAFRSFVFEACQHHAIRLFDFGSEAKRRVGIPTDLVAPPFAVVASNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYRCSYYQEKEEEARASRAKAEKQRQFGWLLVAVLLLMGAAHAVFARLAGREGGRDGG 166
            MTAEETLAFRSFVFEACQHHAIRLFDFGSEAKRRVGIPTDLVAPPFAVVASNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYRCSYYQEKEEEARASRAKAEKQRQFGWLLVAVLLLMGAAHAVFARLAGREGGRDGG
Sbjct:    1 MTAEETLAFRSFVFEACQHHAIRLFDFGSEAKRRVGIPTDLVAPPFAVVASNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYRCSYYQEKEEEARASRAKAEKQRQFGWLLVAVLLLMGAAHAVFARLAGREGGRDGG 166          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|545369551|ref|XP_005649519.1| (hypothetical protein COCSUDRAFT_83668 [Coccomyxa subellipsoidea C-169] >gi|384251497|gb|EIE24975.1| hypothetical protein COCSUDRAFT_83668 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 96.6709 bits (239), Expect = 3.204e-20
Identity = 57/117 (48.72%), Postives = 64/117 (54.70%), Query Frame = 0
Query:    1 MTAEETLAFRSFVFEACQHHAIR-----LFDFGSEAKRRVGIPTDLVAPPFAVVASNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYRC 112
            MT EE   FR  V E   H   +     L  F  EA    G   D  APPFAVVAS   D     G FWPVR Y WGTCEA S+ HSD   LK+LL EEG+ +L+ ATE+RY  YR 
Sbjct:  305 MTVEELRDFRRHVQEQLAHAGKKHKKDLLHAFSEEALDAAGARRD--APPFAVVASTTMD--LSVGRFWPVRKYPWGTCEALSSVHSDVGALKRLLFEEGYEELKAATEDRYYHYRS 417          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|552812710|ref|XP_005843766.1| (hypothetical protein CHLNCDRAFT_54927 [Chlorella variabilis] >gi|307103404|gb|EFN51664.1| hypothetical protein CHLNCDRAFT_54927 [Chlorella variabilis])

HSP 1 Score: 80.4925 bits (197), Expect = 1.044e-14
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 0
Query:    1 MTAEETLAFRSFVFEACQHHAIRL---FDFGSEAKRRVGIPTDLVAPPFAVVASNQFD-EVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYR 111
            MTAEE   FR  V +  +   ++     D   EA  R G       PPFAV+ SN  D EV   G FWPVR Y WG+ EA  T+HSD   L++LL E G+ +L+  TE+R+  YR
Sbjct:  263 MTAEELKEFRHRVRDGLRRERMKSPFSHDALEEAGARHG-------PPFAVIGSNTMDLEV---GRFWPVRRYPWGSVEAMLTQHSDLPVLRRLLFETGYLELKDGTEQRFHEYR 367          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|302829545|ref|XP_002946339.1| (hypothetical protein VOLCADRAFT_102935 [Volvox carteri f. nagariensis] >gi|300268085|gb|EFJ52266.1| hypothetical protein VOLCADRAFT_102935 [Volvox carteri f. nagariensis])

HSP 1 Score: 75.0998 bits (183), Expect = 8.572e-13
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 0
Query:   19 HHAIRLFDFGSEAKRRVGIPTDLVA-PPFAVVASNQFDEVKGSGS---FWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYRCS 113
            H  I +F F  +   R G+       PPF VVASN   E   +     FWP R Y WGT EAF+ EHSD   ++ LL++E   ++ +   +RY A+R S
Sbjct:  290 HDKINVFKFERDTLERAGVQDQATPHPPFLVVASNDISEELAAAEPPLFWPERRYPWGTAEAFNKEHSDLLAVRALLMKEALEEISKTKRQRYEAWRRS 388          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|760449073|ref|XP_011401605.1| (Septin-7 [Auxenochlorella protothecoides] >gi|675356131|gb|KFM28571.1| Septin-7 [Auxenochlorella protothecoides])

HSP 1 Score: 73.1738 bits (178), Expect = 4.633e-12
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 0
Query:   44 PPFAVVASNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYR 111
            PPFAVV S   D     G FWPVR Y WG  EA  T HSD   L++LL E  F DL++ T+ RY+ +R
Sbjct:  313 PPFAVVGSRDMD--LAVGRFWPVRRYPWGRVEALLTRHSDLPALRRLLFEAAFEDLKENTDARYLDFR 378          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|51849620|dbj|BAD42341.1| (CDC10 cell division cycle 10 homolog [Nannochloris bacillaris])

HSP 1 Score: 73.1738 bits (178), Expect = 5.148e-12
Identity = 42/111 (37.84%), Postives = 57/111 (51.35%), Query Frame = 0
Query:    1 MTAEETLAFRSFVFEACQHHAIRLFDFGSEAKRRVGIPTDLVAPPFAVVASNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYR 111
            MT EE   +R  V  A   H I  + F  EA    G       PPFAVV ++  D  +  G FWPVR Y WG CE+  T HS+   L++LL E  + +L+  T++ Y  +R
Sbjct:  467 MTPEELHVYRHEVHAALHRHGI--WHFSHEALSAAGAQH---GPPFAVVGADTID--RSVGRFWPVRRYPWGKCESLLTAHSELPILRRLLFETAYWELKANTDKEYHKFR 570          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|298709918|emb|CBJ31643.1| (Sept3, septin GTPase [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 7.442e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 0
Query:    1 MTAEETLAFRSFVFE-ACQHHAIRLFDFG----SEAKRRVGIPTDLV-------APPFAVVASNQFDEVKGSGSFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAY 110
            MT +E   F++ + + A Q   ++ F F     +E K  +G PTD          PP+AV++S   +  +G  S  P R Y WGTC    T HSD TYL+ LLLE GF D+++  + RY A+
Sbjct:  205 MTVDEMKEFKTAIVDLAAQDDQLKFFQFSETSWNECKGALG-PTDPPNWLGERQPPPYAVISSKVDESHRGIRS--PARRYPWGTCHVMETAHSDNTYLQCLLLEVGFQDMKKEMKTRYKAF 323          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|298709916|emb|CBJ31641.1| (Sept5, septin GTPase, incomplete sequence [Ectocarpus siliculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 1.844e-11
Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = 0
Query:    1 MTAEETLAFR-SFVFEACQHHAIRLFDFGSEAKRR----VGIPTDLV------APPFAVVASNQFDEVKGSG-SFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYRCSYYQEKEEEAR 123
            MT +E + F+ + V  A Q + +  F+F   A  +    + I  + +       PP+AV++S Q D+  G+  +  PVR Y WG C     EHSD TYL+ LLLE GF D++    +RY A+       K EEA+
Sbjct:  146 MTVDEMIGFKKAIVDSAAQANGVEFFNFSERAWGKCLGALNIADEPIWLGERRPPPYAVISS-QVDDPNGNAHAPDPVRRYPWGDCHVMRPEHSDNTYLQCLLLEVGFQDMKDEMRKRYEAF-------KTEEAK 272          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|299115179|emb|CBN74010.1| (Sept2, septin GTPase [Ectocarpus siliculosus])

HSP 1 Score: 70.8626 bits (172), Expect = 2.258e-11
Identity = 54/176 (30.68%), Postives = 81/176 (46.02%), Query Frame = 0
Query:    1 MTAEETLAFRSFVFE-ACQHHAIRLFDFGSEAKRR----VGIPTDLV------APPFAVVASNQFDEVKGSG-SFWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYR-------CSYYQEKEEEARASRAKAEKQRQFGWL-----LVAVLLLMGAAHAV 152
            MT +E   F+  + + A + + +  F F   A  +    + I  + +       PP+AV++S Q D+  G+  +  PVR Y WG C     EHSD TYL+ LLLE GF D++    +RY A++        +   EK  E R + A  +       L      VAV+L     HAV
Sbjct:  194 MTVDEMFDFKKAIADSAAKANGLEFFTFSERAWEKCLAALNIADEPIWLGERRPPPYAVISS-QVDDPNGNAHAHDPVRRYPWGECHVMRPEHSDNTYLQCLLLEVGFQDMKDKMRKRYEAFKKQEAKPLVTRVGEKNREYRLAIASGKPSTILVVLAVIFAFVAVILAATQVHAV 368          
BLAST of EWM22796.1 vs. NCBI_GenBank
Match: gi|159472066|ref|XP_001694177.1| (septin-like protein [Chlamydomonas reinhardtii] >gi|158277344|gb|EDP03113.1| septin-like protein [Chlamydomonas reinhardtii])

HSP 1 Score: 70.4774 bits (171), Expect = 3.592e-11
Identity = 36/97 (37.11%), Postives = 50/97 (51.55%), Query Frame = 0
Query:   19 HHAIRLFDFGSEAKRRVGIPTDLVA-PPFAVVASNQFDEVKGSGS---FWPVRDYHWGTCEAFSTEHSDCTYLKKLLLEEGFHDLRQATEERYMAYR 111
            H  I +F F  +   R G+       PPF V+ASN   E   +     FWP R Y WGT EAF+ EHSD   ++ LL++E   ++ +    RY A+R
Sbjct:  292 HDKINIFKFERDTLERAGVQDHATPHPPFLVIASNDISEELAAAEPPLFWPERRYPWGTAEAFNKEHSDLLAVRALLMKEALEEISKTKRARYEAWR 388          
The following BLAST results are available for this feature:
BLAST of EWM22796.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103417|gb|EWM22796.1|1.260e-119100.00septin 7, partial [Nannochloropsis gaditana][more]
gi|545369551|ref|XP_005649519.1|3.204e-2048.72hypothetical protein COCSUDRAFT_83668 [Coccomyxa s... [more]
gi|552812710|ref|XP_005843766.1|1.044e-1442.61hypothetical protein CHLNCDRAFT_54927 [Chlorella v... [more]
gi|302829545|ref|XP_002946339.1|8.572e-1338.38hypothetical protein VOLCADRAFT_102935 [Volvox car... [more]
gi|760449073|ref|XP_011401605.1|4.633e-1250.00Septin-7 [Auxenochlorella protothecoides] >gi|6753... [more]
gi|51849620|dbj|BAD42341.1|5.148e-1237.84CDC10 cell division cycle 10 homolog [Nannochloris... [more]
gi|298709918|emb|CBJ31643.1|7.442e-1236.89Sept3, septin GTPase [Ectocarpus siliculosus][more]
gi|298709916|emb|CBJ31641.1|1.844e-1134.81Sept5, septin GTPase, incomplete sequence [Ectocar... [more]
gi|299115179|emb|CBN74010.1|2.258e-1130.68Sept2, septin GTPase [Ectocarpus siliculosus][more]
gi|159472066|ref|XP_001694177.1|3.592e-1137.11septin-like protein [Chlamydomonas reinhardtii] >g... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7899rna7899Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications