rna7897, rna7897 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7897
Unique Name	rna7897
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	297
Alignment location	KK037247.1:55129..55903 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100178g1.3204.mrna
Orig protein id	gnl\|cribi\|Naga_100178g1.3204
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:55129..55903 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100178g1	gene7649	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7897	rna7897-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22799.1	cds7875	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:55129..55903+
coding sequence from alignment at KK037247.1:55129..55903+

mRNA sequence

>rna7897 ID=rna7897|Name=rna7897|organism=Nannochloropsis gaditana|type=mRNA|length=297bp
ATGCTGGTTTCAGAGGGAGCCAAATCAGCGGCTGACAAAATCGACGCCAG
GATCCTGATTGTGAATCTTGTAAAAACTCAATGTGCTCAGGCGCTAATGG
AGGGAGAAAATACCCAGCATTCATCTAAGCCTGGATTCTGTGCACGATGT
CGAATGAATTCTTGGGCCGGTCTTCTGCTGTATCAGCTCCTCGCGGAAGT
CGGAATGCTCGTAAAACAGGAGCCTCTGAGCTCCTGTGATAGATTTGAAT
CTCGTCCTTTGCGCATAGTAGCGCTCCTTACAAGGAAATGGAATTGA

protein sequence of rna7897

>rna7897-protein ID=rna7897-protein|Name=rna7897|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MATLSREEDGTQPELSREWSKEEMREEDLNDSSYMGVMSFHSQGGPMDEE
RVAGDAGGRLKRTKASTSRPFPPSHTVLYHNQGHGFEDESNLSASSLTSL
SLPSPSSSALAPFQGRDSSLQGESGPGRAPHEHLSSNDVSATAMESMQTE
AVGTVPPAESMGDEYKRMAAQKAQRERRYQALVTSKEHARRNFPRMRRIY
TDYHLKVMVAGEAGHGKTTCVREEG

mRNA from alignment at KK037247.1:55129..55903+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7897 ID=rna7897|Name=rna7897|organism=Nannochloropsis gaditana|type=mRNA|length=775bp|location=Sequence derived from alignment at KK037247.1:55129..55903+ (Nannochloropsis gaditana)
ATGCGTTGGAATGCGGCAGGTCAATTGGATTAACATTAACCCGTTTTCGT
CTTACGTTGCGGACAGGACCATCAGAACAAATCGTGTGGTGCACTGGGCA
TGGCGACTTtgtcaagggaggaggacgggacgcaGCCAGAGCTGTCCCGT
GAAtggtcgaaggaggaaatgagggaggaagacctgaACGATTCATCTTA
TATGGGTGTGATGTCATTCCATTCTCAAGGAGGGccgatggacgaggaga
gggtggcagGGGATGCAGGAGGTAGGTTGAAAAGGACGAAGGCTAGCACG
TCccggccctttcctccctctcacacCGTCCTTTATCATAATCAAGGGCA
CGGATTCGAGGACGAGAGCAAtctttccgcctcctccctcacctccttgt
ccctcccttcgccctcctcctccgcgctggctcccttccaaggccgggac
tcctccctccagggtGAAAGCGGCCCCGGCCGGGCGCCTCACGAACACCT
TTCATCCAACGACGTAAGTGCTACAGCCATGGAGTCTATGCAGACCGAGG
CCGTGGGCACCGTGCCGCCAGCAGAGAGCATGGGCGATGAATACAAGCGG
ATGGCCGCCCAGAAGGCgcaaagggagaggcggtATCAGGCGCTTGTCAC
CTCCAAAGAGCATGCCCGCAGGAATTTTCCCCGCATGCGTCGGATTTACA
CTGACTATCACTTGAAGGTGATGGTGGCTGGCGAGGCGGGGCATGGGAAG
ACCACgtgcgtgagggaggaaggga

Coding sequence (CDS) from alignment at KK037247.1:55129..55903+

>rna7897 ID=rna7897|Name=rna7897|organism=Nannochloropsis gaditana|type=CDS|length=676bp|location=Sequence derived from alignment at KK037247.1:55129..55903+ (Nannochloropsis gaditana)
ATGGCGACTTtgtcaagggaggaggacgggacgcaGCCAGAGCTGTCCCG
TGAAtggtcgaaggaggaaatgagggaggaagacctgaACGATTCATCTT
ATATGGGTGTGATGTCATTCCATTCTCAAGGAGGGccgatggacgaggag
agggtggcagGGGATGCAGGAGGTAGGTTGAAAAGGACGAAGGCTAGCAC
GTCccggccctttcctccctctcacacCGTCCTTTATCATAATCAAGGGC
ACGGATTCGAGGACGAGAGCAAtctttccgcctcctccctcacctccttg
tccctcccttcgccctcctcctccgcgctggctcccttccaaggccggga
ctcctccctccagggtGAAAGCGGCCCCGGCCGGGCGCCTCACGAACACC
TTTCATCCAACGACGTAAGTGCTACAGCCATGGAGTCTATGCAGACCGAG
GCCGTGGGCACCGTGCCGCCAGCAGAGAGCATGGGCGATGAATACAAGCG
GATGGCCGCCCAGAAGGCgcaaagggagaggcggtATCAGGCGCTTGTCA
CCTCCAAAGAGCATGCCCGCAGGAATTTTCCCCGCATGCGTCGGATTTAC
ACTGACTATCACTTGAAGGTGATGGTGGCTGGCGAGGCGGGGCATGGGAA
GACCACgtgcgtgagggaggaaggga

Synonyms

Publications