rna7894, rna7894 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7894
Unique Name	rna7894
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1967
Alignment location	KK037247.1:52063..53070 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100178g4.3205.mrna
Orig protein id	gnl\|cribi\|Naga_100178g4.3205
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:52063..53070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100178g4	gene7646	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7894	rna7894-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22800.1	cds7872	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:52063..53070+
coding sequence from alignment at KK037247.1:52063..53070+

mRNA sequence

>rna7894 ID=rna7894|Name=rna7894|organism=Nannochloropsis gaditana|type=mRNA|length=1967bp
AACTCAGGCCTGACAACCAACAAAGGAGCTCAAAGGTGAAGTGCGCTTGC
TTCGACTTATTCAGCTAGTAAGCTCCACCCGGGGATGGAGCAGCCTAATG
CTCCACATTCATCCGGTCTGATTGCTCCAGCTATGCCGAATGAGAATTCA
TGCGATCTATTTCTATCAAGTTAGCGAAGAATAGATACTAGGGAGAGCTG
TGATGCGGATAAGGATAAGAACATTGCAGGCCGCCGCTTTCGCTTTCTCG
GTGCTGTTCTGCATACATGTCTTTCTCCTTAACATGTCTATTTCTAATTG
GGGCAAAACTAGACAGCATATGCAGCTCGCAGCAAAACCGAGTCTTGCCT
CATCATTACTTGAGGATATTCTTGTGGTCATATCGTATCACTGGAATGTT
GGGAAACTTGTATATCTCACCGCCATGCTTGACCTCATTCAGACGTACGA
GACTCGAGTAGACGTCCTGATCGTTACAGACAACGACGAGGCTCTGCACA
AAATATTAGCCGCATGGGGATACATGGGAAACAGCAATCCCACGCTCCAA
CTATGGCAAGCTCCCACCACCGACGATAAGCATAAATATTCATTACTTTG
GGCCCACAGACAGGCGATTGAAGATGCTGTTGAAAGGCATCCCGGTTATA
CATCGATATTCTACATGGAAGACGACACGCACTTGACCTGGCCGACTGTA
GTATCTTGGGCATTGGATACAGAAATTCTTGAACCGCTGAACTTTACGCG
CTGTATCTATCGAACAGAGGTGGATGTAAAGACGGGGGACTTCAACATGA
TGGATTATACCAATACCCCATTATGCATCACCAGGAAAAATGTGCTGGAT
GCGACTCGAAATGATGACTTCGTTCGCATACAGGAACGGCTGAAAAAGCA
ACCCGCTCTCCGTTGCGGGAGGCATCGCGATAAGACACAATGGACTTGCG
GCGTCCACGATCGGTTCGTCTCACCAACAGAGCCCTACCAGGGTATGTGG
ATGGCCACGCGCGCTCAGCTTGCCCGCTTTATGGCACATTCTTTTTGGAT
TAAGGAAATGGCCTTGAATGCCACTTTAGCCGCTGACATGATCATGGGGT
ACCCAGAGCGCAGTACGGTTATGAACTTGCTGATCAACGTGCCTGAAGGC
TTTCGTTCTAACTGTATGGTGCCCTTTGTCCTCAGCGACCAATATGATGG
GGTTCTGAAGCCCATTTTGCCTCTGGTTGCCCGTGTTGAACACATGCGAA
ACGGATACTCCCCGGATACTACGACCCCACTAGGGAAAACCCACTTGCAA
GTAGCGATCAAGGGAAAGATCCTTCTTCCTCGCGAGAGAGAGGAGATGAA
AGCGAGGGAGAAAGCACAAGAGAATGAGTCATCAGGGAAAGGACGAAAAA
GGGTTGAATAAACGCGTTTCGAAAATAATTCCTTGTAGATGAAATCGAAG
GAGTCATTTAAGAATGTTCGTAACGTTGATATGGTTCAGAGGATGCTCAC
TATGCGAGCCTACGACGCCAACACTAACCAACATGTCTATGGTTTACCTT
CTGTCCCTGAGTGTCTCATTAAGTCCATTAGGGTACCCCGCTTCTAATGC
AATAGATTTTTTCCAGGTCCTTTTTATCAGATTTTCACAACATTGGTTTT
TTGGCACTCTTGCCACTGTGGCGAAGAATACGCGTAACACAGAGTTCTAT
GGGCCACGCTCTCTCTAGTGGCTCTGAATGCTACTTTCGATACCATGCGG
GGGGTAAGCCACGGATGCGGAGGAGAAAAGGCCGTCCTGGTACACCAGTT
CTTTTCTTACAACAAATCCTTTGTTTGTAATCTTGATAGAAACATAAATT
CATTTTCCGGCCAAAACGAATGTTTCCTTCTCTTGCAGAGAAACATTTGT
TTTTTGGAGATGAATAACTTTCTTTCCTTCAGGTATAAAAGTAATTTCCT
TTCTTACCAGGAAAACA

protein sequence of rna7894

>rna7894-protein ID=rna7894-protein|Name=rna7894|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MKVLQKRFWQEPLEPIWQYRGKYYLGKTNDVEDKDQVTPFFLANFVNASD
PAVYKRKIYIDLGIKDFYSSLCWIMQNYPVKFDAIHGFECASDLSNVAAL
SSQIDACVRESAADLKQGYTPEGVKDILHIYYDYIGTDENPATQPPTRGL
SQVMKDLNIEKDDYVVVKMDVEEMEYALIDKIIADGTYKLIDEMFVEIHY
NHPEMRKFGWQMFHKSRNDAQALFTKARDVGMYIHPWP

mRNA from alignment at KK037247.1:52063..53070+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7894 ID=rna7894|Name=rna7894|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp|location=Sequence derived from alignment at KK037247.1:52063..53070+ (Nannochloropsis gaditana)
ATGAAAGTTCTCCAGAAAAGGTGAGCTAGTGCGTAAAACCGATAAAAACG
CTATCACGTTACACCATGAATGCCAATCTAGGACTTATTATCGATCTTTT
AGGTTCTGGCAGGAGCCGCTCGAGCCTATTTGGCAATATCGAGGAAAGTA
CTATCTCGGCAAGACCAATGATGTCGAAGACAAAGACCAAGTAAGGAAGC
TGATGGCGTATCTCTGTTTAATGGGGTGTGTACGCGTCTTTCAATGCGGA
ACGATCCCGTAACTGCTTCCCTCTTACTTAATGATTCACCTTGTACGTTC
TTCTTATTCCTAGGTGACTCCGTTTTTCCTTGCAAACTTCGTCAATGCCT
CTGATCCGGCCGTGTACAAGCGTAAAATATACATTGACTTGGGGATCAAA
GATTTCTACAGCAGTTTGTGCTGGATTATGCAGAATTATCCGGTGAAGTT
TGACGCCATACATGGCTTTGAGTGCGCGAGTGATCTCAGCAATGTAGCAG
CCCTCAGCAGTCAAATTGACGCGTGTGTCCGTGAATCGGCGGCTGATTTG
AAACAAGGCTACACACCCGAAGGTGTCAAGGATATACTTCACATCTATTA
TGACTACATTGGTACCGACGAGAATCCAGCAACGCAACCACCGACGCGTG
GTCTGAGTCAGGTCATGAAGGACTTGAATATCGAGAAGGATGACTACGTG
GTGGTAaagatggacgtggaagagatggaatACGCGCTCATAGACAAGAT
TATTGCTGATGGCACCTATAAGCTGATTGACGAGGTAAGAAAGATTTGCG
GGCAATGTGAAGATGCTACAGGTTGCACGGACTTGTCTCATGGATTCTCT
TTCCATCCAATCTCGTGCAGATGTTTGTCGAAATCCATTACAACCATCCA
GAGATGCGCAAGTTTGGTTGGCAAATGTTTCATAAATCACGAAACGACGC
GCAAGCACTCTTCACGAAAGCAAGGGACGTAGGCATGTACATCCATCCTT
GGCCCTGA

Coding sequence (CDS) from alignment at KK037247.1:52063..53070+

>rna7894 ID=rna7894|Name=rna7894|organism=Nannochloropsis gaditana|type=CDS|length=2868bp|location=Sequence derived from alignment at KK037247.1:52063..53070+ (Nannochloropsis gaditana)
ATGAAAGTTCTCCAGAAAAGGTTCTGGCAGGAGCCGCTCGAGCCTATTTG
GCAATATCGAGGAAAGTACTATCTCGGCAAGACCAATGATGTCGAAGACA
AAGACCAAGTGACTCCGTTTTTCCTTGCAAACTTCGTCAATGCCTCTGAT
CCGGCCGTGTACAAGCGTAAAATATACATTGACTTGGGGATCAAAGATTT
CTACAGCAGTTTGTGCTGGATTATGCAGAATTATCCGGTGAAGTTTGACG
CCATACATGGCTTTGAGTGCGCGAGTGATCTCAGCAATGTAGCAGCCCTC
AGCAGTCAAATTGACGCGTGTGTCCGTGAATCGGCGGCTGATTTGAAACA
AGGCTACACACCCGAAGGTGTCAAGGATATACTTCACATCTATTATGACT
ACATTGGTACCGACGAGAATCCAGCAACGCAACCACCGACGCGTGGTCTG
AGTCAGGTCATGAAGGACTTGAATATCGAGAAGGATGACTACGTGGTGGT
AaagatggacgtggaagagatggaatACGCGCTCATAGACAAGATTATTG
CTGATGGCACCTATAAGCTGATTGACGAGATGTTTGTCGAAATCCATTAC
AACCATCCAGAGATGCGCAAGTTTGGTTGGCAAATGTTTCATAAATCACG
AAACGACGCGCAAGCACTCTTCACGAAAGCAAGGGACGTAGGCATGTACA
TCCATCCTTGGCCCTGAATGAAAGTTCTCCAGAAAAGGTTCTGGCAGGAG
CCGCTCGAGCCTATTTGGCAATATCGAGGAAAGTACTATCTCGGCAAGAC
CAATGATGTCGAAGACAAAGACCAAGTGACTCCGTTTTTCCTTGCAAACT
TCGTCAATGCCTCTGATCCGGCCGTGTACAAGCGTAAAATATACATTGAC
TTGGGGATCAAAGATTTCTACAGCAGTTTGTGCTGGATTATGCAGAATTA
TCCGGTGAAGTTTGACGCCATACATGGCTTTGAGTGCGCGAGTGATCTCA
GCAATGTAGCAGCCCTCAGCAGTCAAATTGACGCGTGTGTCCGTGAATCG
GCGGCTGATTTGAAACAAGGCTACACACCCGAAGGTGTCAAGGATATACT
TCACATCTATTATGACTACATTGGTACCGACGAGAATCCAGCAACGCAAC
CACCGACGCGTGGTCTGAGTCAGGTCATGAAGGACTTGAATATCGAGAAG
GATGACTACGTGGTGGTAaagatggacgtggaagagatggaatACGCGCT
CATAGACAAGATTATTGCTGATGGCACCTATAAGCTGATTGACGAGATGT
TTGTCGAAATCCATTACAACCATCCAGAGATGCGCAAGTTTGGTTGGCAA
ATGTTTCATAAATCACGAAACGACGCGCAAGCACTCTTCACGAAAGCAAG
GGACGTAGGCATGTACATCCATCCTTGGCCCTGAATGAAAGTTCTCCAGA
AAAGGTTCTGGCAGGAGCCGCTCGAGCCTATTTGGCAATATCGAGGAAAG
TACTATCTCGGCAAGACCAATGATGTCGAAGACAAAGACCAAGTGACTCC
GTTTTTCCTTGCAAACTTCGTCAATGCCTCTGATCCGGCCGTGTACAAGC
GTAAAATATACATTGACTTGGGGATCAAAGATTTCTACAGCAGTTTGTGC
TGGATTATGCAGAATTATCCGGTGAAGTTTGACGCCATACATGGCTTTGA
GTGCGCGAGTGATCTCAGCAATGTAGCAGCCCTCAGCAGTCAAATTGACG
CGTGTGTCCGTGAATCGGCGGCTGATTTGAAACAAGGCTACACACCCGAA
GGTGTCAAGGATATACTTCACATCTATTATGACTACATTGGTACCGACGA
GAATCCAGCAACGCAACCACCGACGCGTGGTCTGAGTCAGGTCATGAAGG
ACTTGAATATCGAGAAGGATGACTACGTGGTGGTAaagatggacgtggaa
gagatggaatACGCGCTCATAGACAAGATTATTGCTGATGGCACCTATAA
GCTGATTGACGAGATGTTTGTCGAAATCCATTACAACCATCCAGAGATGC
GCAAGTTTGGTTGGCAAATGTTTCATAAATCACGAAACGACGCGCAAGCA
CTCTTCACGAAAGCAAGGGACGTAGGCATGTACATCCATCCTTGGCCCTG
AATGAAAGTTCTCCAGAAAAGGTTCTGGCAGGAGCCGCTCGAGCCTATTT
GGCAATATCGAGGAAAGTACTATCTCGGCAAGACCAATGATGTCGAAGAC
AAAGACCAAGTGACTCCGTTTTTCCTTGCAAACTTCGTCAATGCCTCTGA
TCCGGCCGTGTACAAGCGTAAAATATACATTGACTTGGGGATCAAAGATT
TCTACAGCAGTTTGTGCTGGATTATGCAGAATTATCCGGTGAAGTTTGAC
GCCATACATGGCTTTGAGTGCGCGAGTGATCTCAGCAATGTAGCAGCCCT
CAGCAGTCAAATTGACGCGTGTGTCCGTGAATCGGCGGCTGATTTGAAAC
AAGGCTACACACCCGAAGGTGTCAAGGATATACTTCACATCTATTATGAC
TACATTGGTACCGACGAGAATCCAGCAACGCAACCACCGACGCGTGGTCT
GAGTCAGGTCATGAAGGACTTGAATATCGAGAAGGATGACTACGTGGTGG
TAaagatggacgtggaagagatggaatACGCGCTCATAGACAAGATTATT
GCTGATGGCACCTATAAGCTGATTGACGAGATGTTTGTCGAAATCCATTA
CAACCATCCAGAGATGCGCAAGTTTGGTTGGCAAATGTTTCATAAATCAC
GAAACGACGCGCAAGCACTCTTCACGAAAGCAAGGGACGTAGGCATGTAC
ATCCATCCTTGGCCCTGA

Synonyms

Publications