rna7893, rna7893 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7893
Unique Name	rna7893
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2369
Alignment location	KK037247.1:49104..51070 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100178g6.3213.mrna
Orig protein id	gnl\|cribi\|Naga_100178g6.3213
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:49104..51070 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100178g6	gene7645	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7893	rna7893-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22808.1	cds7871	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:49104..51070+
coding sequence from alignment at KK037247.1:49104..51070+

mRNA sequence

>rna7893 ID=rna7893|Name=rna7893|organism=Nannochloropsis gaditana|type=mRNA|length=2369bp
ATGCACTCAGAGCAGTCTGGGCATTCATCACAGTCCAATGCATCGAGCGG
GAATTATTCAAGCAATAGAAAATTAGACGGTTGTAATGTCGCCAGGCTTA
CCTATCAGCCACATCCCGGACAGGCCCCGCTTGAAGAGCGACATAACCAC
GTGGTTTTCAATGCGGTGAAAGGTGAAAACTACCAAAATATGAAGCGGCT
TTTCCGTCGCTTACGGAGAGCCGGCCTGAAAGTCACCATCAACAAGCACT
CAGACGTCCCATCCATTCTCGTCCGGGAAGGGCAGCATGTCGGGATACGA
CCAGACGCCTCGCATGGGGCTCCAGCACTGTCACTACCCTCCTTGGCCGT
CTTTGCGTGTCCTCAATCGGCTTTCACGACTCACGAGGAACAAGCCCTCT
CTCGCTTCCTGCTCGTAGAGGGGCAAAGCGTCCTCCTTCTCCTCTCAGAA
GGGGTGGGGAACAATCAATGCGGGAGCGAGGAGGGCCCTAGTTCTCTTCT
TAACCGCTGGCTCCAGCCCTGGGGCATGCACGCGCACCACGACGCTGTTC
TCCGGCGGCGGAGACACCCTCGCTTTCCCCATCCCAAGGAGGTCTTCCTC
TCCCTGTCCTCTTTGCCTGAGACGGAAGACGACCAGGCGGGGAAGGACGA
AAGGCAGGAAGAGGAGGGGGACCCGGGCTTCTCCTTCGTCTATCCCTACG
GTTGCTCCCTGTCCGTTGCGCCCCCTGCGAAGGTCCTGCTCTCCTCCGGC
CCTTACTCTTATCCCGCCCACCGCCCAGTGCTGGCCGCCTGGGAGGGTCG
TGCGGAGGGAGAGGACGGAGGGGAGGGGAAGGGTGCGGGAAGGCGGGGGG
AGGCGGGGAAGGAAGAAGAGGAGTGGTTGAACGGAGGGGAAAGGGGCAAA
GGTCGAGGAGGGGGAGGTGCAGGTGGAGGAGGGAGGAGAGGAGGGCGGCT
TGTTGTCCTGGGCGCGGCGGACATGTGGACCGACGCGTGGCTCGACCAAG
AGGACAACGGCTGGCTCGCGGATGTGATCTTCCGGTGGCTGCTCCATCGC
GAGCCGGACGCGGAGTCCAGCGCCCCTCCCTCTAACCTGGGTCAAGCCAG
TTTTAGCCATGACCGTTCCCCCTCCCGGCTTGTTCAGCTCCTCTTCTGTG
GGGACGCGAGGCCAGAGCAGGAGCGGGCGCATGACCCCGCCCTCCCTCCC
TCCCTACAACCACGCTTGTGCACCCCACGTGTCCGAGACCTCGCGCAGCA
GCTTCGACCGTGTCTTCAGGGAAAAATGTACTCTACGCCGCAAAGTCACG
TCGATCTCAACAACCTGCTCAACCCTCCCGATGAAGGAGGACGGGAAGGA
GGGCGAGGGAGAGGGAAAGCAGGCGTTCCCCCTGGAGAGGAACCGCCTTT
GTATGCACTGCGACCAAACACGCTGCTCCCAGAAGTCCTCGCAACGCACC
ACGCTCTGGGTCTGGAACCAGAGCACCCCTTGAGGCCCGTGGCGCCGGAG
TTCGTCTGTCCTCAGCCCCCGTTGCGCCTGGCCGTCTTCCCTCCCTCGTT
CGCGCCTCCCCCCCCTCCCACCCTCGAGCAATTCGACCTAGACCAGGTGT
TTGCGTCGCCACGGACCCAATTGGCGCGTCTCTTCCACAAATGTGCCTCG
AGCAGGTTGGAAGGGGCAAAAGAAGGATCCAGGGAGGATTTGAGCTATTT
TGTGCGCGAGGCTGCTGAGGTAAGGGGAGGTGACAAGGAGAGGAACTGGA
GAAAGAGCTGATTGTAGAAGGTGATGAGACCTGAGTGTCCTGTGAGCGCT
TGACTAGGCCGTGAGGCGATGGGCGCGAGATGTTGGCGTGCTTTGCATCC
ACCTTTGGAGATGGTGATAGCTGCGTTTAAATATTTCATGTTGTGAAAGC
GGGATGTTGATGAGAATGAGACTGAGCCTTCCCCTCTTTTCTTCTCTTCC
CCTTCTTCATGAGATCGTTGGCCTGCACGATTTATCGTCCTCCGAGTCCG
CCTCCGGTGGGAAGGAGCTCGGGGCGGGAAAAGAGGAGGGGGACGCAGCC
AAGAAGACGCTGGCCGTGCTTGTGGAGCAGCTCGCCCGTTGGAAAGGAAG
AGGGGGGTCGGGGTAAAGCGAGGAGTTGGGAGGCAGAGTGCGGTGGGATC
AGCAGGGGGTGGGGTTCAAGCAGGGATGGATAGAGGAATGGAAGCGAAGG
GAAGCCATGGGGGGGCTGGCCAAGGCTTTACCGAGGGATGCAGGGGGGGT
AGAGGGGATTGGGAACAGTGCTGCCTTTGTTTCTAGATGGCGTGCATAAA
GAGGTGTAGATCTCGGAAAAATGTAAAGGAAGTAAATTACAGGACAAGAA
AGAATAAAGTCTCGAATGG

protein sequence of rna7893

>rna7893-protein ID=rna7893-protein|Name=rna7893|organism=Nannochloropsis gaditana|type=polypeptide|length=402bp
MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLAS
SLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHK
ILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYT
SIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMM
DYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCG
VHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGY
PERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRN
GYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKAQENESSGKGRKR
VE

mRNA from alignment at KK037247.1:49104..51070+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7893 ID=rna7893|Name=rna7893|organism=Nannochloropsis gaditana|type=mRNA|length=1967bp|location=Sequence derived from alignment at KK037247.1:49104..51070+ (Nannochloropsis gaditana)
AACTCAGGCCTGACAACCAACAAAGGAGCTCAAAGGTGAAGTGCGCTTGC
TTCGACTTATTCAGCTAGTAAGCTCCACCCGGGGATGGAGCAGCCTAATG
CTCCACATTCATCCGGTCTGATTGCTCCAGCTATGCCGAATGAGAATTCA
TGCGATCTATTTCTATCAAGTTAGCGAAGAATAGATACTAGGGAGAGCTG
TGATGCGGATAAGGATAAGAACATTGCAGGCCGCCGCTTTCGCTTTCTCG
GTGCTGTTCTGCATACATGTCTTTCTCCTTAACATGTCTATTTCTAATTG
GGGCAAAACTAGACAGCATATGCAGCTCGCAGCAAAACCGAGTCTTGCCT
CATCATTACTTGAGGATATTCTTGTGGTCATATCGTATCACTGGAATGTT
GGGAAACTTGTATATCTCACCGCCATGCTTGACCTCATTCAGACGTACGA
GACTCGAGTAGACGTCCTGATCGTTACAGACAACGACGAGGCTCTGCACA
AAATATTAGCCGCATGGGGATACATGGGAAACAGCAATCCCACGCTCCAA
CTATGGCAAGCTCCCACCACCGACGATAAGCATAAATATTCATTACTTTG
GGCCCACAGACAGGCGATTGAAGATGCTGTTGAAAGGCATCCCGGTTATA
CATCGATATTCTACATGGAAGACGACACGCACTTGACCTGGCCGACTGTA
GTATCTTGGGCATTGGATACAGAAATTCTTGAACCGCTGAACTTTACGCG
CTGTATCTATCGAACAGAGGTGGATGTAAAGACGGGGGACTTCAACATGA
TGGATTATACCAATACCCCATTATGCATCACCAGGAAAAATGTGCTGGAT
GCGACTCGAAATGATGACTTCGTTCGCATACAGGAACGGCTGAAAAAGCA
ACCCGCTCTCCGTTGCGGGAGGCATCGCGATAAGACACAATGGACTTGCG
GCGTCCACGATCGGTTCGTCTCACCAACAGAGCCCTACCAGGGTATGTGG
ATGGCCACGCGCGCTCAGCTTGCCCGCTTTATGGCACATTCTTTTTGGAT
TAAGGAAATGGCCTTGAATGCCACTTTAGCCGCTGACATGATCATGGGGT
ACCCAGAGCGCAGTACGGTTATGAACTTGCTGATCAACGTGCCTGAAGGC
TTTCGTTCTAACTGTATGGTGCCCTTTGTCCTCAGCGACCAATATGATGG
GGTTCTGAAGCCCATTTTGCCTCTGGTTGCCCGTGTTGAACACATGCGAA
ACGGATACTCCCCGGATACTACGACCCCACTAGGGAAAACCCACTTGCAA
GTAGCGATCAAGGGAAAgatccttcttcctcgcgagagagaggagatgaa
agcgagggagaaagcacaAGAGAATGAGTCATCAGGGAAAGGACGAAAAA
GGGTTGAATAAACGCGTTTCGAAAATAATTCCTTGTAGATGAAATCGAAG
GAGTCATTTAAGAATGTTCGTAACGTTGATATGGTTCAGAGGATGCTCAC
TATGCGAGCCTACGACGCCAACACTAACCAACATGTCTATGGTTTACCTT
CTGTCCCTGAGTGTCTCATTAAGTCCATTAGGGTACCCCGCTTCTAATGC
AATAGATTTTTTCCAGGTCCTTTTTATCAGATTTTCACAACATTGGTTTT
TTGGCACTCTTGCCACTGTGGCGAAGAATACGCGTAACACAGAGTTCTAT
GGGCCACGCTCTCTCTAGTGGCTCTGAATGCTACTTTCGATACCATGCGG
GGGGTAAGCCACggatgcggaggagaaaaggccgTCCTGGTACACCAGTT
CTTTTCTTACAACAAATCCTTTGTTTGTAATCTTGATAGAAACATAAATT
CATTTTCCGGCCAAAACGAATGTTTCCTTCTCTTGCAGAGAAACATTTGT
TTTTTGGAGATGAAtaactttctttccttcaggTATAAAAGTAATTTCCT
TTCTTACCAGGAAAACA

Coding sequence (CDS) from alignment at KK037247.1:49104..51070+

>rna7893 ID=rna7893|Name=rna7893|organism=Nannochloropsis gaditana|type=CDS|length=1209bp|location=Sequence derived from alignment at KK037247.1:49104..51070+ (Nannochloropsis gaditana)
ATGCGGATAAGGATAAGAACATTGCAGGCCGCCGCTTTCGCTTTCTCGGT
GCTGTTCTGCATACATGTCTTTCTCCTTAACATGTCTATTTCTAATTGGG
GCAAAACTAGACAGCATATGCAGCTCGCAGCAAAACCGAGTCTTGCCTCA
TCATTACTTGAGGATATTCTTGTGGTCATATCGTATCACTGGAATGTTGG
GAAACTTGTATATCTCACCGCCATGCTTGACCTCATTCAGACGTACGAGA
CTCGAGTAGACGTCCTGATCGTTACAGACAACGACGAGGCTCTGCACAAA
ATATTAGCCGCATGGGGATACATGGGAAACAGCAATCCCACGCTCCAACT
ATGGCAAGCTCCCACCACCGACGATAAGCATAAATATTCATTACTTTGGG
CCCACAGACAGGCGATTGAAGATGCTGTTGAAAGGCATCCCGGTTATACA
TCGATATTCTACATGGAAGACGACACGCACTTGACCTGGCCGACTGTAGT
ATCTTGGGCATTGGATACAGAAATTCTTGAACCGCTGAACTTTACGCGCT
GTATCTATCGAACAGAGGTGGATGTAAAGACGGGGGACTTCAACATGATG
GATTATACCAATACCCCATTATGCATCACCAGGAAAAATGTGCTGGATGC
GACTCGAAATGATGACTTCGTTCGCATACAGGAACGGCTGAAAAAGCAAC
CCGCTCTCCGTTGCGGGAGGCATCGCGATAAGACACAATGGACTTGCGGC
GTCCACGATCGGTTCGTCTCACCAACAGAGCCCTACCAGGGTATGTGGAT
GGCCACGCGCGCTCAGCTTGCCCGCTTTATGGCACATTCTTTTTGGATTA
AGGAAATGGCCTTGAATGCCACTTTAGCCGCTGACATGATCATGGGGTAC
CCAGAGCGCAGTACGGTTATGAACTTGCTGATCAACGTGCCTGAAGGCTT
TCGTTCTAACTGTATGGTGCCCTTTGTCCTCAGCGACCAATATGATGGGG
TTCTGAAGCCCATTTTGCCTCTGGTTGCCCGTGTTGAACACATGCGAAAC
GGATACTCCCCGGATACTACGACCCCACTAGGGAAAACCCACTTGCAAGT
AGCGATCAAGGGAAAgatccttcttcctcgcgagagagaggagatgaaag
cgagggagaaagcacaAGAGAATGAGTCATCAGGGAAAGGACGAAAAAGG
GTTGAATAA

Synonyms

Publications