EWM22808.1, cds7871 (CDS) Nannochloropsis gaditana

Overview
NameEWM22808.1
Unique Namecds7871
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037247.1:49306..50514 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22808.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100178g6.3213.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:49306..50514 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585103431|gb|EWM22808.1| (hypothetical protein Naga_100178g6 [Nannochloropsis gaditana])

HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0
Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0
Query:    1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKAQENESSGKGRKRVE 402
            MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKAQENESSGKGRKRVE
Sbjct:    1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKAQENESSGKGRKRVE 402          
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585111577|gb|EWM29058.1| (hypothetical protein Naga_100024g48 [Nannochloropsis gaditana])

HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0
Identity = 284/388 (73.20%), Postives = 326/388 (84.02%), Query Frame = 0
Query:    1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKA 388
            M+ R   L+  A  F VLFC++  +L+M IS + +T QH QL A P  ASSLLEDILVVISYHWNVGKLVYLT+MLDLIQTYET+VDVLIVT+ND+ALHK LAA GY+  SNPT+QLWQAPT++D +KYSLLW HRQAIE AVERHP YTSIFYMEDDTHL+WPTVVSWALDTE+LEPLNFTRC YRTEVD +TGDFN++DY    L IT ++VLDATRN DF+R+QERL+KQPAL CG+H DKT+W+ GVHDRF+SPT PYQGMWMATRAQLARFMAH +W K++A  ATL A M MGYPER+TVMNLLINVPEGFRSNCMVPF+LSDQ DG+LKP LP VARVEHMRNGYS +   PLGK H+ +AI G +LLPRE EEMKA+E  
Sbjct:    1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYF-LSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSE-PGPLGKIHVHLAITGDVLLPRESEEMKAQEAG 386          
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|545362251|ref|XP_005646369.1| (hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169] >gi|384248341|gb|EIE21825.1| hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 115.931 bits (289), Expect = 2.685e-25
Identity = 98/334 (29.34%), Postives = 150/334 (44.91%), Query Frame = 0
Query:   47 SLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWG-----YMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFW---IKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLK----PILPLVARVEHMRNGYSPDTTTPLGKTHLQVA 368
            S +  LLE + V +++HW+V  L  L   +  I  Y T V + I+++  E L + +  WG     ++  +N TL        D  H   L + HR  ++ A  ++  YT+  Y+E D ++ WP ++ WA DT +LEPL F R  YR E    TG   + D       I R N+   T  +  +R+             R RD+       H  FV    PY  +W+ATR+QLA+F+  + W    K  A+ A  A  +              ++VP+GF S  +VP+       GV +    P + + A +EHM N Y    T   G+ H  VA
Sbjct:   90 SNSGPLLEHMFVCVTFHWDVSGLTLLRQAVMTISHYPTTVTMCIISNRPELLRQAIREWGSGADHWVCGTNQTL-------LDPLH---LAFVHRSYMDQAF-KNKDYTTFMYLEHDMNVPWPALLGWAADTPLLEPLGFQRGFYRVEPSQHTGLPTLTDQ------IGRINI---TAYEKKLRV-------------RFRDEVDLVKEKH--FVQLPNPYFAVWVATRSQLAKFLRSAQWDVRYKPWAVRAMAACGL------------QFVDVPKGFFSAAVVPY-----NPGVPQQRQPPRMNVHAAIEHMSNKYCSAITG--GQLHCTVA 369          
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|545362249|ref|XP_005646368.1| (hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169] >gi|384248340|gb|EIE21824.1| hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 86.2705 bits (212), Expect = 1.460e-15
Identity = 72/275 (26.18%), Postives = 109/275 (39.64%), Query Frame = 0
Query:   79 IQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVER-HPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGY 352
            ++ Y T+V + ++T+  + L   L +W           L  +P     H+Y L +AHR  +E+A++   P YT+  Y+E D  L+W  ++ WA D  +L  L F R  YR E   + G   + D                          ER++     R  R R            F+    PY GMW+A R +L  F     W KE+    T          E +      I  P+GF S+ +VP+   D   G L       + VEH+ N Y
Sbjct:    7 LERYPTKVAIRVLTNQPQRLRLALQSWSSQA-------LVCSPEAALSHRYQLAFAHRTYMEEALKSTDPEYTAFIYLESDIRLSWRALLGWAADEPVLSRLGFQRAFYRVEPIEQNGLLGLTDQ------------------------MERVQLATYPRTVRTRAMLGEEIVQEKYFLQLPNPYMGMWIADRDRLVNFTTSLQWTKEIDPWDTR---------EMAACGLQFIGTPDGFVSSAVVPY---DPESGQLDAD----SAVEHLSNKY 234          
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585099609|gb|EWM20191.1| (hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099610|gb|EWM20192.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099611|gb|EWM20193.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana])

HSP 1 Score: 77.7962 bits (190), Expect = 3.814e-12
Identity = 74/295 (25.08%), Postives = 127/295 (43.05%), Query Frame = 0
Query:   41 QLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLL----WAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIM---GYPERSTVMNLLINVPEGFRSNCMVPFVLS 328
            +L ++     +LL  I V IS+H+NV +L YL+  L+ +  ++   DV I T+      K+LA   Y+ N        +  T       SL     W  R+A++ A +    Y +  ++EDD  +TW  ++ W  D +IL+  NFTR   R E+    G+ + +D+ +             +R   F + Q+    +  ++ G                      Y GM++ATR Q+  F+  SFW        +  AD      G  E ++     +NVPEG+    ++PF ++
Sbjct:   58 KLGSQSRQTPTLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPS---KLLA---YLQNPVTGTAFSRKVTLCQIKNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDIQILKAHNFTRTFLRYEISPLNGEPHTLDFHDA----------GPSRLVSFPQ-QDGQDAKYFVQAGGFEGT-----------------YAGMFVATRQQMLDFINSSFW--------SFIADRFCCDEGGREDASWKIQSLNVPEGWDKTGLLPFNIT 310          
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585099629|gb|EWM20203.1| (hypothetical protein Naga_100947g2 [Nannochloropsis gaditana])

HSP 1 Score: 75.8702 bits (185), Expect = 1.488e-11
Identity = 75/295 (25.42%), Postives = 125/295 (42.37%), Query Frame = 0
Query:   41 QLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPT----TDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIM---GYPERSTVMNLLINVPEGFRSNCMVPFVLS 328
            +L ++     +LL  I V IS+H+NV +L YL+  L+ +  ++   DV I T+      K+LA   Y+ N        +  T     +      L W  R+A++ A +    Y +  ++EDD  +TW  ++ W  D+++L+  NFTR   R E+    G+ + +D+ +                        RL   P       +D       V       T  Y GM++ATR Q+  F+  SFW        +  AD      G  E ++     INVPEG+    ++PF ++
Sbjct:   58 KLGSQSRQTPTLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPS---KLLA---YLQNPVTGTAFSRKVTLCQINNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDSQMLKAHNFTRTFLRYEISPLNGEPHTLDFHDAG--------------------PSRLVAFP------QQDGEDAKYFVQAGGFEGT--YAGMFVATRQQMLDFINSSFW--------SFIADRFCCDEGGREDASWKIQSINVPEGWDKTGLLPFNIT 310          
The following BLAST results are available for this feature:
BLAST of EWM22808.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585103431|gb|EWM22808.1|0.000e+0100.00hypothetical protein Naga_100178g6 [Nannochloropsi... [more]
gi|585111577|gb|EWM29058.1|0.000e+073.20hypothetical protein Naga_100024g48 [Nannochlorops... [more]
gi|545362251|ref|XP_005646369.1|2.685e-2529.34hypothetical protein COCSUDRAFT_66698 [Coccomyxa s... [more]
gi|545362249|ref|XP_005646368.1|1.460e-1526.18hypothetical protein COCSUDRAFT_56274 [Coccomyxa s... [more]
gi|585099609|gb|EWM20191.1|3.814e-1225.08hypothetical protein Naga_101107g2 [Nannochloropsi... [more]
gi|585099629|gb|EWM20203.1|1.488e-1125.42hypothetical protein Naga_100947g2 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7893rna7893Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications