EWM22808.1, cds7871 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585103431|gb|EWM22808.1| (hypothetical protein Naga_100178g6 [Nannochloropsis gaditana]) HSP 1 Score: 845.499 bits (2183), Expect = 0.000e+0 Identity = 402/402 (100.00%), Postives = 402/402 (100.00%), Query Frame = 0
Query: 1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKAQENESSGKGRKRVE 402
MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKAQENESSGKGRKRVE
Sbjct: 1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKAQENESSGKGRKRVE 402
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585111577|gb|EWM29058.1| (hypothetical protein Naga_100024g48 [Nannochloropsis gaditana]) HSP 1 Score: 594.349 bits (1531), Expect = 0.000e+0 Identity = 284/388 (73.20%), Postives = 326/388 (84.02%), Query Frame = 0
Query: 1 MRIRIRTLQAAAFAFSVLFCIHVFLLNMSISNWGKTRQHMQLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGYSPDTTTPLGKTHLQVAIKGKILLPREREEMKAREKA 388
M+ R L+ A F VLFC++ +L+M IS + +T QH QL A P ASSLLEDILVVISYHWNVGKLVYLT+MLDLIQTYET+VDVLIVT+ND+ALHK LAA GY+ SNPT+QLWQAPT++D +KYSLLW HRQAIE AVERHP YTSIFYMEDDTHL+WPTVVSWALDTE+LEPLNFTRC YRTEVD +TGDFN++DY L IT ++VLDATRN DF+R+QERL+KQPAL CG+H DKT+W+ GVHDRF+SPT PYQGMWMATRAQLARFMAH +W K++A ATL A M MGYPER+TVMNLLINVPEGFRSNCMVPF+LSDQ DG+LKP LP VARVEHMRNGYS + PLGK H+ +AI G +LLPRE EEMKA+E
Sbjct: 1 MQSRKIALKVFASIFLVLFCMNALVLDMPISIFSETTQHTQLRATPCPASSLLEDILVVISYHWNVGKLVYLTSMLDLIQTYETKVDVLIVTNNDKALHKFLAARGYIEKSNPTIQLWQAPTSNDSNKYSLLWVHRQAIEKAVERHPNYTSIFYMEDDTHLSWPTVVSWALDTEVLEPLNFTRCNYRTEVDAETGDFNVLDYPYF-LSITSESVLDATRNTDFLRLQERLRKQPALDCGKHHDKTRWSVGVHDRFISPTYPYQGMWMATRAQLARFMAHPYWKKKIASTATLPAGMGMGYPERTTVMNLLINVPEGFRSNCMVPFILSDQGDGILKPTLPSVARVEHMRNGYSSE-PGPLGKIHVHLAITGDVLLPRESEEMKAQEAG 386
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|545362251|ref|XP_005646369.1| (hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169] >gi|384248341|gb|EIE21825.1| hypothetical protein COCSUDRAFT_66698 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 115.931 bits (289), Expect = 2.685e-25 Identity = 98/334 (29.34%), Postives = 150/334 (44.91%), Query Frame = 0
Query: 47 SLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWG-----YMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFW---IKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLK----PILPLVARVEHMRNGYSPDTTTPLGKTHLQVA 368
S + LLE + V +++HW+V L L + I Y T V + I+++ E L + + WG ++ +N TL D H L + HR ++ A ++ YT+ Y+E D ++ WP ++ WA DT +LEPL F R YR E TG + D I R N+ T + +R+ R RD+ H FV PY +W+ATR+QLA+F+ + W K A+ A A + ++VP+GF S +VP+ GV + P + + A +EHM N Y T G+ H VA
Sbjct: 90 SNSGPLLEHMFVCVTFHWDVSGLTLLRQAVMTISHYPTTVTMCIISNRPELLRQAIREWGSGADHWVCGTNQTL-------LDPLH---LAFVHRSYMDQAF-KNKDYTTFMYLEHDMNVPWPALLGWAADTPLLEPLGFQRGFYRVEPSQHTGLPTLTDQ------IGRINI---TAYEKKLRV-------------RFRDEVDLVKEKH--FVQLPNPYFAVWVATRSQLAKFLRSAQWDVRYKPWAVRAMAACGL------------QFVDVPKGFFSAAVVPY-----NPGVPQQRQPPRMNVHAAIEHMSNKYCSAITG--GQLHCTVA 369
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|545362249|ref|XP_005646368.1| (hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169] >gi|384248340|gb|EIE21824.1| hypothetical protein COCSUDRAFT_56274 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 86.2705 bits (212), Expect = 1.460e-15 Identity = 72/275 (26.18%), Postives = 109/275 (39.64%), Query Frame = 0
Query: 79 IQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLLWAHRQAIEDAVER-HPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIMGYPERSTVMNLLINVPEGFRSNCMVPFVLSDQYDGVLKPILPLVARVEHMRNGY 352
++ Y T+V + ++T+ + L L +W L +P H+Y L +AHR +E+A++ P YT+ Y+E D L+W ++ WA D +L L F R YR E + G + D ER++ R R R F+ PY GMW+A R +L F W KE+ T E + I P+GF S+ +VP+ D G L + VEH+ N Y
Sbjct: 7 LERYPTKVAIRVLTNQPQRLRLALQSWSSQA-------LVCSPEAALSHRYQLAFAHRTYMEEALKSTDPEYTAFIYLESDIRLSWRALLGWAADEPVLSRLGFQRAFYRVEPIEQNGLLGLTDQ------------------------MERVQLATYPRTVRTRAMLGEEIVQEKYFLQLPNPYMGMWIADRDRLVNFTTSLQWTKEIDPWDTR---------EMAACGLQFIGTPDGFVSSAVVPY---DPESGQLDAD----SAVEHLSNKY 234
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585099609|gb|EWM20191.1| (hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099610|gb|EWM20192.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana] >gi|585099611|gb|EWM20193.1| hypothetical protein Naga_101107g2 [Nannochloropsis gaditana]) HSP 1 Score: 77.7962 bits (190), Expect = 3.814e-12 Identity = 74/295 (25.08%), Postives = 127/295 (43.05%), Query Frame = 0
Query: 41 QLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPTTDDKHKYSLL----WAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIM---GYPERSTVMNLLINVPEGFRSNCMVPFVLS 328
+L ++ +LL I V IS+H+NV +L YL+ L+ + ++ DV I T+ K+LA Y+ N + T SL W R+A++ A + Y + ++EDD +TW ++ W D +IL+ NFTR R E+ G+ + +D+ + +R F + Q+ + ++ G Y GM++ATR Q+ F+ SFW + AD G E ++ +NVPEG+ ++PF ++
Sbjct: 58 KLGSQSRQTPTLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPS---KLLA---YLQNPVTGTAFSRKVTLCQIKNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDIQILKAHNFTRTFLRYEISPLNGEPHTLDFHDA----------GPSRLVSFPQ-QDGQDAKYFVQAGGFEGT-----------------YAGMFVATRQQMLDFINSSFW--------SFIADRFCCDEGGREDASWKIQSLNVPEGWDKTGLLPFNIT 310
BLAST of EWM22808.1 vs. NCBI_GenBank
Match: gi|585099629|gb|EWM20203.1| (hypothetical protein Naga_100947g2 [Nannochloropsis gaditana]) HSP 1 Score: 75.8702 bits (185), Expect = 1.488e-11 Identity = 75/295 (25.42%), Postives = 125/295 (42.37%), Query Frame = 0
Query: 41 QLAAKPSLASSLLEDILVVISYHWNVGKLVYLTAMLDLIQTYETRVDVLIVTDNDEALHKILAAWGYMGNSNPTLQLWQAPT----TDDKHKYSLLWAHRQAIEDAVERHPGYTSIFYMEDDTHLTWPTVVSWALDTEILEPLNFTRCIYRTEVDVKTGDFNMMDYTNTPLCITRKNVLDATRNDDFVRIQERLKKQPALRCGRHRDKTQWTCGVHDRFVSPTEPYQGMWMATRAQLARFMAHSFWIKEMALNATLAADMIM---GYPERSTVMNLLINVPEGFRSNCMVPFVLS 328
+L ++ +LL I V IS+H+NV +L YL+ L+ + ++ DV I T+ K+LA Y+ N + T + L W R+A++ A + Y + ++EDD +TW ++ W D+++L+ NFTR R E+ G+ + +D+ + RL P +D V T Y GM++ATR Q+ F+ SFW + AD G E ++ INVPEG+ ++PF ++
Sbjct: 58 KLGSQSRQTPTLLGRIHVSISFHFNVQRLTYLSRNLETMSLWDNVPDVCIGTNEPS---KLLA---YLQNPVTGTAFSRKVTLCQINNLSLPNLLNWRTREAMQLAFQSSVHYNTFVFVEDDVFITWDKMLKWEEDSQMLKAHNFTRTFLRYEISPLNGEPHTLDFHDAG--------------------PSRLVAFP------QQDGEDAKYFVQAGGFEGT--YAGMFVATRQQMLDFINSSFW--------SFIADRFCCDEGGREDASWKIQSINVPEGWDKTGLLPFNIT 310 The following BLAST results are available for this feature:
BLAST of EWM22808.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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