rna7887, rna7887 (mRNA) Nannochloropsis gaditana

Overview
Namerna7887
Unique Namerna7887
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1053
Alignment locationKK037247.1:24228..25681 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100178g11.3203.mrna
Orig protein idgnl|cribi|Naga_100178g11.3203
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:24228..25681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100178g11gene7640Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7887rna7887-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22798.1cds7865Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7887 ID=rna7887|Name=rna7887|organism=Nannochloropsis gaditana|type=mRNA|length=1053bp
GGAGGGAGTTCTGGAGGCCGTATGCGATGCAGTGGCGCAGAGCCTGGCCT
CCTATGCCTTTCCTCCTTCCTCCTCCTTTCTTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCCTTTCTATCTTCTCCCCGAGCGCA
GAGGACGTCGTTTTCCTGGCTGAGGGATTCGTGAGCTACCTAAAACAGCC
TTCTCTTTCTCCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTCCCT
CCTTCATCTCTTTCCCAGCTATTTCCCGCACTACCTCCTCCCCTTCTCCC
TCCATCCCCGCAGCCACCACGTCTCAAGGAAGGATTCCTACCTCCTCCCC
TCTCCTCCTACCCCCCTCCCTCCTTCGCGCCCACGGAGTCTTCTCCTCCC
TCCTTTCCTCCTCGCGTGCTTCGAGCTGGCAACCCTCCCACCGCCGCCGC
CTCCGTCGGCTTCTCTCCCAAATCAGAAGGGCGGGAGGGAGGGAAGGAAG
GAAGGAGAAGCCACTTCCGCGCTCTCCTACCCTGCATCACGCAGTGTTGC
GAGCAGGCAGCGTCGGGGAAATTCGAAACGTGATGCAGGCGCCTGAAGAG
GCGATGGGGAGGGAAGGAAGGGAAGAGGGGGGGAGGGAAGGGGCAAGGGA
GGAGGGACAGGAGGAAGCAATGGACGCTTTGACCTTAGCAACGGCTGCTC
AGAGACTGGGTCGTTTGTGCACGGGGTGTTTTGGCGCCCAAGTTAAGGTG
GCGACGTGGTTCTTCCCGATGGTGGAGAAGGCGCTAGCCGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGCAGGAGCTGGAGCAGAAGCAGGAGAAAGGGG
ATAGAGGGAGAAGGAGAAGGAGGAAATTGTGCTTTGACGCACGAGCTTTT
ACGTCTCTATGTGACGGGATCGCGATGCTAGGTGCTCCAGGTAGGAAGGG
GGGAAGGGAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGAAAAGAGAAAGG
GAGGGCTGATCGGAGGCAAGGTAGCAGCACCCGTTGACAAGGGGGCTCAC
TAG
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protein sequence of rna7887

>rna7887-protein ID=rna7887-protein|Name=rna7887|organism=Nannochloropsis gaditana|type=polypeptide|length=293bp
MHLLRDKRRGRFSRSVVSERHAERDKKKPSTATQGKSWKGCAVSSKSKKG
CFCPLASSSSTAQGPLSRRVLVPSLRPGYLITLLAVDFLLKGNLPCADAF
LPRVHSQARLWARCTRSVPCLTPLQPRSPSSPGAQIAPSTDGIDPTFPAP
PQVFSTPDACLSPSPVIPVRRAPVNLTTPCALTLAFPDVERRSTREGTPG
YPEASKRHQVPPAHISQANFLSRCLPPTPAPTLLPSFPPSLPCFLDLHLL
PPRHLGYVLKELSAPGRRRREGGGVDGKEGVLEAVCDAVAQSL
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mRNA from alignment at KK037247.1:24228..25681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7887 ID=rna7887|Name=rna7887|organism=Nannochloropsis gaditana|type=mRNA|length=1454bp|location=Sequence derived from alignment at KK037247.1:24228..25681- (Nannochloropsis gaditana)
TCGATGTGAAGCAGGAGCCGCGCTCTTGAAGCGTGTCCGGGATCATCGCC
GCGTGAAACACAGGTTTGGGCGGGCTGGAACACCCTTTGTGCCCCTCTTT
TCATTGTAAAGGCATTTATAAGACTACAAGACTTTTACTGTCAGTCCTCA
CCCTCCTAGCACTCGGGGCTGCGGGAAGCCAAGAGTCAACCGTGTTTGGA
CAAAGAGAGCCTTTGGTATCGCCGTCTCAGAGTATCCCTCATTATTTACG
CCACTTTACTCCATGCTCTTCACAGGCAGACAGTGCCTGCCTCGAACGTA
TGGCTTCATATAAGGCACACAAGGAGTTTAATGCTGTCAGAGATTGATTA
GCAGCCTTGTCGGTTTCGGCCCCATAGGCACATTAAAAGCTCATGCACTT
GCTTCGAGACAAGCGGAGAGGGAGGTTTTCTCGAAGCGTCGTCTCTGAGA
GACACGCGGAGCGAGATAAGAAAAAGCCGTCCACAGCAACGCAAGGAAAA
TCGTGGAAAGGATGTGCTGTTTCGAGTAAGAGTAAAAAAGGGTGTTTCTG
CCCCTTGGCAAGCTCATCGAGCACTGCACAGGGCCCCCTTTCCCGCCGAG
TCCTTGTGCCCTCCCTGCGCCCGGGCTACCTTATCACCTTACTTGCCGTC
GATTTTCTCCTGAAAGGCAATTTACCTTGCGCTGACGCCTTTCTGCCCCG
CGTCCACTCTCAAGCTCGTCTCTGGGCACGATGCACCCGCTCAGTCCCTT
GCCTGACTCCGCTTCAGCCGCGGTCCCCGTCCTCCCCCGGGGCTCAGATT
GCTCCCAGCACGGACGGCATCGACCCCACATTTCCCGCTCCACCTCAAGT
CTTTTCCACTCCGGACGCATGCCTGTCGCCCTCCCCGGTCATCCCGGTCC
GTCGCGCGCCTGTGAACCTGACCACACCCTGCGCACTCACCCTCGCCTTC
CCTGATGTGGAGAGGAGGAGCACCAGGGAGGGGACTCCGGGCTACCCGGA
GGCTTCCAAAAGACACCAAGTACCCCCAGCCCATATCTCGCAGGTGTGTT
CTACGCCCTCCAGCTCTTGTCTCCTCTTCAGCATTATGCATGCCCCTCCA
CCCTCCCTCCCTTCCTCCCATCCTCCCTCCCCTTCCTCCTTCCCTCTTTC
CGTCCAATGTCTCCCCGCTGCCTTCTACAGCGCTCATAATTGACCTTCTT
TCATACTCCGCTTCGATCCTGTCCAGGCAAACTTTCTCTCGCGCTGCCTC
CCTCCTACCCCTGCGCCCACCCTCCTTCCCTCCTTCCCTCCCTCCCTCCC
TTGCTTCCTCGACCTTCATCTCCTGCCCCCGCGGCACTTGGGATACGTAC
TCAAGGAGCTAAGCGCTCCGGGAAGAAGAAGGCGGGAAGGGGGGGGGGTT
GACGGGAAGGAGGGAGTTCTGGAGGCCGTATGCGATGCAGTGGCGCAGAG
CCTG
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Coding sequence (CDS) from alignment at KK037247.1:24228..25681-

>rna7887 ID=rna7887|Name=rna7887|organism=Nannochloropsis gaditana|type=CDS|length=1758bp|location=Sequence derived from alignment at KK037247.1:24228..25681- (Nannochloropsis gaditana)
GCAAACTTTCTCTCGCGCTGCCTCCCTCCTACCCCTGCGCCCACCCTCCT
TCCCTCCTTCCCTCCCTCCCTCCCTTGCTTCCTCGACCTTCATCTCCTGC
CCCCGCGGCACTTGGGATACGTACTCAAGGAGCTAAGCGCTCCGGGAAGA
AGAAGGCGGGAAGGGGGGGGGGTTGACGGGAAGGAGGGAGTTCTGGAGGC
CGTATGCGATGCAGTGGCGCAGAGCCTGATGCACTTGCTTCGAGACAAGC
GGAGAGGGAGGTTTTCTCGAAGCGTCGTCTCTGAGAGACACGCGGAGCGA
GATAAGAAAAAGCCGTCCACAGCAACGCAAGGAAAATCGTGGAAAGGATG
TGCTGTTTCGAGTAAGAGTAAAAAAGGGTGTTTCTGCCCCTTGGCAAGCT
CATCGAGCACTGCACAGGGCCCCCTTTCCCGCCGAGTCCTTGTGCCCTCC
CTGCGCCCGGGCTACCTTATCACCTTACTTGCCGTCGATTTTCTCCTGAA
AGGCAATTTACCTTGCGCTGACGCCTTTCTGCCCCGCGTCCACTCTCAAG
CTCGTCTCTGGGCACGATGCACCCGCTCAGTCCCTTGCCTGACTCCGCTT
CAGCCGCGGTCCCCGTCCTCCCCCGGGGCTCAGATTGCTCCCAGCACGGA
CGGCATCGACCCCACATTTCCCGCTCCACCTCAAGTCTTTTCCACTCCGG
ACGCATGCCTGTCGCCCTCCCCGGTCATCCCGGTCCGTCGCGCGCCTGTG
AACCTGACCACACCCTGCGCACTCACCCTCGCCTTCCCTGATGTGGAGAG
GAGGAGCACCAGGGAGGGGACTCCGGGCTACCCGGAGGCTTCCAAAAGAC
ACCAAGTACCCCCAGCCCATATCTCGCAGGCAAACTTTCTCTCGCGCTGC
CTCCCTCCTACCCCTGCGCCCACCCTCCTTCCCTCCTTCCCTCCCTCCCT
CCCTTGCTTCCTCGACCTTCATCTCCTGCCCCCGCGGCACTTGGGATACG
TACTCAAGGAGCTAAGCGCTCCGGGAAGAAGAAGGCGGGAAGGGGGGGGG
GTTGACGGGAAGGAGGGAGTTCTGGAGGCCGTATGCGATGCAGTGGCGCA
GAGCCTGATGCACTTGCTTCGAGACAAGCGGAGAGGGAGGTTTTCTCGAA
GCGTCGTCTCTGAGAGACACGCGGAGCGAGATAAGAAAAAGCCGTCCACA
GCAACGCAAGGAAAATCGTGGAAAGGATGTGCTGTTTCGAGTAAGAGTAA
AAAAGGGTGTTTCTGCCCCTTGGCAAGCTCATCGAGCACTGCACAGGGCC
CCCTTTCCCGCCGAGTCCTTGTGCCCTCCCTGCGCCCGGGCTACCTTATC
ACCTTACTTGCCGTCGATTTTCTCCTGAAAGGCAATTTACCTTGCGCTGA
CGCCTTTCTGCCCCGCGTCCACTCTCAAGCTCGTCTCTGGGCACGATGCA
CCCGCTCAGTCCCTTGCCTGACTCCGCTTCAGCCGCGGTCCCCGTCCTCC
CCCGGGGCTCAGATTGCTCCCAGCACGGACGGCATCGACCCCACATTTCC
CGCTCCACCTCAAGTCTTTTCCACTCCGGACGCATGCCTGTCGCCCTCCC
CGGTCATCCCGGTCCGTCGCGCGCCTGTGAACCTGACCACACCCTGCGCA
CTCACCCTCGCCTTCCCTGATGTGGAGAGGAGGAGCACCAGGGAGGGGAC
TCCGGGCTACCCGGAGGCTTCCAAAAGACACCAAGTACCCCCAGCCCATA
TCTCGCAG
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Synonyms
Publications