rna7880, rna7880 (mRNA) Nannochloropsis gaditana

Overview
Namerna7880
Unique Namerna7880
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2307
Alignment locationCM002475.1:62395..62862 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100437g3.4383.mrna
Orig protein idgnl|cribi|Naga_100437g3.4383
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:62395..62862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100437g3gene7633Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22816.1cds7858Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7880rna7880-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7880 ID=rna7880|Name=rna7880|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp
CTCAAATGTCCTGTCGAGCCATAAGTCTCAGGTAAAAGAGGTATGGTTGT
GAGCTCTACATGGGATGGGCGGTGCGAGCCCATGCACGTGCGCAAGCATG
ATGGAAGAGTCCTGAAGATGATCGATGCTTTATCTGGTCTCTTCAAACAC
ACCCAATAAAAATATGAGAGTGTCCACAGCGCTTCAAATGACACATTGGT
TACATTATGAGGTGGAGGATCTTAATGAAAAGCTTCGCGTTGGAATGCAC
GAGATCAAAATGGAACTTTAATGGAAGAGTGGGTCCTCGCATTGGTATCT
ACACTGACACCGGCCATGGATACGATCTTCCTTTAATGTTTCTCGTCATA
GTCTGCCACAATCAGCTTACTGAAGATCGTGCATCAATTGTTTATCATTA
CCTCTTGCAGGAGTCAAAGATGGAAGCTCCACTTTCCCTCGTTCACACGG
CCTTCGCGCTACTTCGCTTGTCCCGCGAGACTCTGCTTCAAAATCAGCCG
GACAATGCCCAGGAGGATGTGAAGGCTGCGTTGCGCTCTTATTTTACAAA
AAATGTCGCGCATCGCGAGATTGCAGACATAAGTTCGTACATTGATGTGG
TACAAAAAGCCCTTGCGGAGAGTGGAGACGGCATCATGGATAACAATGAG
GATCACGCAACCGTTACCGTTACAACCACGACATCCGCGAATTTACTGGT
TGATTTCTCAGATTCCAGTACATCAGCAACGCAGCAGAAATCTATCACTC
CTTTTTGTAAATCTCCTCCTCCGAAATTGAAGGACCATAGGGATGCGTAT
GGTGTACATGGTGCCGGCAAAATCCGTTCTACCCCTCTCCACTCCTTCCC
CACCGACCCGCTGGCAACACCGTCCTTGCTCACGGAGATCTTTTCCTTCC
TCGGGACAGTGGCCCCTTATGGTGCAGAGCCAGTATTGAATGGCTCAGGC
CACCCGTGCAGGATGTCCGCGGGGCCAGGGTCGGAGACCACGGCTCTTCA
GGCAGTACGCGTGAACCTGGCTCCTTTGCTTACTGTAGCCCGCCTATGGC
GAGCAACCGCCTCTCAAGACCGCTTTTGGCGTCCCATCGTCTCCTGGACA
TTGCCAACACTGACGATGGACGCCAAAGAGACCCGGACCACCAAACCCTT
TCCATACAGACAGGCTTTCCTCCGGTATGCTCGGTGCTTGGCCCTGCCCG
TCGTGGGCGACGGAGAGGAATGGCATGCACATGTCCTGCTTTCCTTTGAG
ATCTATGACGTTCAAGATTCCATGCGTTTATTCGTGGCCTCCGGCCCCCT
GGAAGTGATCCAATCCACAGAATCAGGCCTGACAGCCCTCCGTTTGACCG
GAACGAAACGCTCGGAGGTCTGTCGGCCTTTCTCCGCAAAATCCCGAGAT
CCGGTCAATAAACGCTTCGAGAATATTTCAGCGTACCTTTGCCACAGCTG
GCGACCAGACTTCCCCGTCGGCTTACGCGTGCGTGTCGTGGCTACGGACG
CCAGGACAGGCACTCAGGCCCTCATCTACAATTCCGAACCGAAAACGAAG
CGGTCCGTGAAGGATTCTACTCTTAACTTCTGGAGGCGTTTCCTCCCACG
GCACAGTCTTTTCGTATGGGAAGCCTGGTCACGCTGGGTCCTTCAAAATG
GGACGCAGGAAGCCGTGGAGATAAGCACTTCATTTTACGTCTCCCCCGTC
CAGAAAAGTCCCGTATCCAGCGCCTCCTCGACGGGATCAGCCGAAGAGAG
AGAAGACGGTTGGATGCACTTTCCAAGCGCGACTGGCACAAGCCGGCAGC
GGGCCCTCGACCAACCCCATGTGATCATGGGTGGGGATGAGACTGCCTAC
GCGAACCACAACTCATTTGTGGCCGTCCAATTCCGCACGTTGGACGCTTC
CGTCCCCGCACGCTACATCAAAGGGGCCTTGGAAAGGAGCAGGGCAACAG
GAGGTTGAAATTTCTACGAAGGGAAAATGGAAAGGGAAAAGCACGACCTA
CACCAAGAAAAAGTCGAGACGAAGCAGCGAGGATGAGATGGCGCGAGACA
GGAGGGATCGCAGGGATCTTGCCTGCATCTTATGAAATTTCGCTCTGAAA
AATTATTTGCCGTCAGGACCAAAAAGTCGTTTGTTTACACTAATTGTTTC
GTTGGTTCCTATTGTCGGTCATTTTCTATGCTAGGGTGCCCTTGTTTGTT
GAACAAAGGACTCTCGAGTCTTACGACGAAAGGCTGGAAGCCAAAGCACT
TGCATTTTATTCTAGATCCATCACCTTCGTCGAGCGACAGACAAAGCTAC
CTCTGTC
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protein sequence of rna7880

>rna7880-protein ID=rna7880-protein|Name=rna7880|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MDLGFFCSCILPSRHFSTVSPASITGHRPCCCRGSFHGHIRHQAEQKQCQ
ISALRRAKTGGEEKSELKYETSIRENPCFDDISVAAVLRGKQRKRKLDLK
GRRWKGGNQGIRRRRGEDILEDGEAFDCPPIAAKRNRKKMKARRAWPQGA
YDQKR
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mRNA from alignment at CM002475.1:62395..62862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7880 ID=rna7880|Name=rna7880|organism=Nannochloropsis gaditana|type=mRNA|length=468bp|location=Sequence derived from alignment at CM002475.1:62395..62862- (Nannochloropsis gaditana)
ATGGATCTCGGCTTCTTTTGCTCATGCATCCTCCCCTCTCGCCATTTTTC
CACCGTTTCTCCTGCGTCAATCACAGGCCACAGACCGTGCTGTTGCAGAG
GTAGCTTCCATGGCCATATCCGACATCAAGCAGAGCAAAAACAATGTCAA
ATCTCGGCGTTGAGGAGAGCAAAGACAGGTGGAGAAGAAAAGTCAGAGTT
AAAATATGAAACGAGCATCAGAGAGAATCCCTGCTTTGATGACATATCGG
TAGCTGCAGTGCTACGTGGGAAGCAGAGAAAGAGAAAGTTGGATTTGAAA
GGCAGGAGGTGGAAGGGAGGTAACCAAGGCATTCGGAGGAGAAGAGGAGA
AGACATACTTGAAGACGGGGAGGCGTTTGATTGCCCGCCGATCGCAGCCA
AAAGAAATCGGAAGAAGATGAAGGCCAGGCGCGCATGGCCTCAAGGAGCT
TATGACCAAAAGCGCTGA
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Coding sequence (CDS) from alignment at CM002475.1:62395..62862-

>rna7880 ID=rna7880|Name=rna7880|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002475.1:62395..62862- (Nannochloropsis gaditana)
ATGGATCTCGGCTTCTTTTGCTCATGCATCCTCCCCTCTCGCCATTTTTC
CACCGTTTCTCCTGCGTCAATCACAGGCCACAGACCGTGCTGTTGCAGAG
GTAGCTTCCATGGCCATATCCGACATCAAGCAGAGCAAAAACAATGTCAA
ATCTCGGCGTTGAGGAGAGCAAAGACAGGTGGAGAAGAAAAGTCAGAGTT
AAAATATGAAACGAGCATCAGAGAGAATCCCTGCTTTGATGACATATCGG
TAGCTGCAGTGCTACGTGGGAAGCAGAGAAAGAGAAAGTTGGATTTGAAA
GGCAGGAGGTGGAAGGGAGGTAACCAAGGCATTCGGAGGAGAAGAGGAGA
AGACATACTTGAAGACGGGGAGGCGTTTGATTGCCCGCCGATCGCAGCCA
AAAGAAATCGGAAGAAGATGAAGGCCAGGCGCGCATGGCCTCAAGGAGCT
TATGACCAAAAGCGCTGA
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Synonyms
Publications