rna788, rna788 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna788
Unique Name	rna788
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2489
Alignment location	CM002456.1:422616..423814 +

Link to JBrowse

Properties


Property Name	Value
Product	transducin wd-40 repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100035g50.3366.mrna
Orig protein id	gnl\|cribi\|Naga_100035g50.3366
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:422616..423814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g50	gene754	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna788	rna788-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29902.1	cds788	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:422616..423814+
coding sequence from alignment at CM002456.1:422616..423814+

mRNA sequence

>rna788 ID=rna788|Name=rna788|organism=Nannochloropsis gaditana|type=mRNA|length=2489bp
AGAAGAATTCTTCTAAAATATAACGAGACATCCGCTTGTCTACTGTTTCT
CCTTCCCCGCGAAACGCCATCCGACAATCGATCATATGGCTCAAGCGCCT
TCTATAGCTCTATCCCGGCTAAGCAGCGTCACAGATCTGGTGAACCTGCG
CACTATACCGACGCACAGTCTTCCTGACCACCGGCATAAGGAGCGTTTCC
GACACAAACGTATACTGGACGCATTGAGTACACAAACACGTCATGGCATC
CCTATTCAACGCTCACTTGCCAAGCTCGAAGCGGAGGCCAACAAAATCCT
TCATGATCGCATCCATCTCACAGATGACGAGACGCAGATCTTTCTGGCAT
TCTTTGTAGAGTGCCAGCTGCGTATCTGTCTCGAGAGTGAACTCGACTTG
TCGGGAACATTATACTGGGACTGCCTGTTCTGGCAGGATCGGATCTCAAG
GCCTCTAGAGGCTTGGCTCGAAGCGGGCCCCTTCAGCTGGTTTCAGGACC
CAGACGAGGTAATGACTCCCGAAGACAAACTCGAGTATCTGCAGCGTGTA
ATGGTCCAGATTAATGTGGGCGCTGGCCTGGTGCAGCAGCATTTAAGCCG
CAAACTTGTGAACACTGACGTCCAGTATTTGGGGGAGTGGACCGCGGAGG
CCCTGGCCCTAATAGATGACATTTTAAGCGACGACTTTGAAAGCCCAGGA
CGGCTAGAAATGAGGACATCTGCCCGCCAACTCTTGCCCGCGTCAGCTCA
ACCAGGCTTTGTCAGCTCCGTCGTGGCTCTGAAGGAGTGCATGGCACGTC
TCACTACCCTCAGGACGCGCATTTCGACGCGCGCAGCCTGCTTTCATAAA
GCCACTTCCCATTTGCGCGCCCCCTCCTTCTTGCGCCGTCGATGGCTGCA
TATTCTCGTTGCCGCTCCTTTCCTCTTCTTTAGTCTCCGGTGGGTATGGG
GAAAGCGCGGAGACATTCCCCGATGGGTGGCGCAAGCCGTCCGCAGCACA
CGCGAGTTTTTCCTCGAGCACGTCTCGGAGCCTTCCCGGGCGATCGCCAA
GGAACTCATTTGGAACGAGCACGAAAGCATTACGGACGTGGCGGCCTTGG
AGGACGCGAAGGAGAGCTTGGCCAGGATGTTGGCGGATTTCGTGCGGGAC
ACGAACCCGAAGCTCCCTGAGGAAGAGCGACGGGCCCTGGCAGCGAACAT
GGACATGTCCGTGGTTTCCTCCAGGTACGAGCAGTCGCTTCCCCAGGCGA
TGAGGCATATCATCAACGGGGAAATTGTCAGGATGCTCCTGATTCAGGTG
CAGTTCATCAAGAAGGAGCTGCTGGTCGCCATGCGGGGGATTGACGATGT
CATGAACAGCAACAACCTGAACTTCCGCCTGATGGCTATTTTTCCGGCCG
TCTTGGCCATGTACGGGACCTATCAAGGCACTAAGGCTGTGACGTATAAG
CTGACCAGAAGGAAGGGCCGCGGAGAAACCATCATGCTTCTGCGGTCTTT
CCTCCTTTCCATGGAGCGTATGCTCAACCTGCGCAATGTGGGGGCCTCCG
AGAATGAAATCAAGTACTTGAAACTCAATCGCCCCGCTGCGTTCCATGCA
AATTCTTTCAGCCTCGGTGGTAGTGTAGGTCAATCTGATGCACAGCACCA
GCAAGCCCCTTCCGTCTTCTCTCCTACACCCGTGGAAGGAGAAGAAGCGA
GAAAAGGTTCGAGGATGCCCTTGGAATCAATTCGACAGCGGTCAACCGAG
TCCATCGATGACGGAAATTCCTCCGACTATGACCACGTGGCCGAGGACGA
GACACCAGGAAAAGGGGAGGGGGAGGCAGGAGACAGCCACAGAGGGTCAT
TGCCCATGCTCGAGGAAAGGCGAGAAGAGGAAGTCCCTTTCGTGAGCAGG
GCAAGCACATTGGATGATTTGGAGCGCGGTACTTTCAATGCGGAGCCGCG
TGTCGTCTTTTTGAAGCCCGAAGACCTCGGAGTGCTGCTCTTGCTCATCC
ACCAATTCGCCCAGGTCGTGCAACGGACCAGCCGCCGGTTTCTGACGGAC
CTAGAGCTCCGAAATTTGCAGGAGGACTTGAATGAAATAATAGGAAATTG
TGGGCCGGTTACGGTGGCCCAGCAACTTTGTGTCGTCCAACGCATGCATC
GGAGCTACCGTTTCTTGCAGGCACCGGCTGGAAGCTTGTTCTCGAGCCTA
TAACAGCACCGGAGGTGATATAGGACGGAGGGGGTTGAACCAGCAAGCAG
TCAATCCTGTTTAGATTGTGTGTAATACACATGCAGAAAGCAGCGCAAGA
TAGACAGCAGCAAAAGGAGTAAACACAGAAAAAGAAACAATTCGAAAAGA
AAACAAGATCAGAAGAAGAGCAAGCCATCGAAATCACCTCTTCAAGCAGA
ATTTGCCGGACCTGAACAGCAACTTGGCCTTGCTCCCTGATGAAACTCTC
TAAGCTGTTGTCGTAAAAATCATTTTGTGAGCTCATTCT

protein sequence of rna788

>rna788-protein ID=rna788-protein|Name=rna788|organism=Nannochloropsis gaditana|type=polypeptide|length=310bp
MADDEDEILPQVLDVGGDSELFGLDLHPTQDMLALGLVDGRALLYSYLEK
GAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKD
WDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKH
EDFIADLLVHEGTLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVL
KHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLT
GSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCV
RFWDLSSGRQ

mRNA from alignment at CM002456.1:422616..423814+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna788 ID=rna788|Name=rna788|organism=Nannochloropsis gaditana|type=mRNA|length=1199bp|location=Sequence derived from alignment at CM002456.1:422616..423814+ (Nannochloropsis gaditana)
ATGGCggatgatgaagacgaaATCTTGCCCCAGGTATGATTTATGCAGAT
TTAAGCCACGAATCTGAACcgtttcctccacctcctccctccccagcctt
TCCCGGAATAAAATACATGCACTTTGAGGAATGCTCTTGTTTGTCCTGTT
TCATAAAGAAATATAATTGCGTGTCTTTTAATGCACATTAAAGGTCttgg
acgtgggaggggattCTGAACTTTTTGGACTGGACTTGCATCCTACGCAA
GACATGTTAGCGCTGGGCCTTGTGGATGGCAGGGCTTTGCTGTATTCTTA
TctggagaaaggggcagTTTGCGCTTTGCACGCCGAAACGGGCGCACACA
AAGAAGCTTGCCGTGCTGTCTTGTTTGAACCTTCTCTTGGTGTTCAAGTT
TTTACTGCCTCCTCGGACAAGAGCATACGTGCGCTAGACATTGAGACGGG
CAAGAAGGACTGGGACGTGGACGGTGCCCATCCTGACGCGGTCAACTGCC
TTACTTattggggagaagggagactCTTAGTATCCGGTGACGATGTAGGC
GGAGTGAAGCTGTGGGATTGCCGACAATCGAGGAAAGCCGTggtctcggt
ccacaagcacGAGGATTTCATTGCCGACCTCCTGGTCCACGAGGGCACCT
TGTTCGCGGCCAGCGGGGACAACACTCTATCAACATATGATCTGAGGCAG
CGAAAGCTGGCAGCCCGCACCATGGACCAGGAGGATGAGCTCTTGAGCCT
TTCTGTCCTGAAGCACGGCcggaaggtggtggcggggacCCAAAGCGGGG
TCTTGCTCATCTATTCCTGGGGCGAGTGGCTGAACAGCTCGGATCGTTTC
GTAGGCCACCCggagacggtggaggccttggtgaaggtggacgaggagac
ctTGCTGACGGGCTCGAGCGACGGCCTGATCCGCCTGTGCTCGGTGCTGC
CCAACAGGTTGCTGGGGGTGGTAGGCACCCACGATGCCTTCCCCGTGGAG
GGCATGCGGCTGTCGCGAGACGGCGAGGTGCTCGTCTCGGTGGCGCATGA
CAGTTGTGTCAGGTTTTGGGACCTGAGTGTGttgcaggaaggggaagagg
gggagggggaggaggaggaggaggaggaggaggggccccGAGCAAGGCAG
GAGAGTAATGGGaacggggcaggaggtgaggCAGTCGGGAAGACAGTGA

Coding sequence (CDS) from alignment at CM002456.1:422616..423814+

>rna788 ID=rna788|Name=rna788|organism=Nannochloropsis gaditana|type=CDS|length=2799bp|location=Sequence derived from alignment at CM002456.1:422616..423814+ (Nannochloropsis gaditana)
ATGGCggatgatgaagacgaaATCTTGCCCCAGGTCttggacgtgggagg
ggattCTGAACTTTTTGGACTGGACTTGCATCCTACGCAAGACATGTTAG
CGCTGGGCCTTGTGGATGGCAGGGCTTTGCTGTATTCTTATctggagaaa
ggggcagTTTGCGCTTTGCACGCCGAAACGGGCGCACACAAAGAAGCTTG
CCGTGCTGTCTTGTTTGAACCTTCTCTTGGTGTTCAAGTTTTTACTGCCT
CCTCGGACAAGAGCATACGTGCGCTAGACATTGAGACGGGCAAGAAGGAC
TGGGACGTGGACGGTGCCCATCCTGACGCGGTCAACTGCCTTACTTattg
gggagaagggagactCTTAGTATCCGGTGACGATGTAGGCGGAGTGAAGC
TGTGGGATTGCCGACAATCGAGGAAAGCCGTggtctcggtccacaagcac
GAGGATTTCATTGCCGACCTCCTGGTCCACGAGGGCACCTTGTTCGCGGC
CAGCGGGGACAACACTCTATCAACATATGATCTGAGGCAGCGAAAGCTGG
CAGCCCGCACCATGGACCAGGAGGATGAGCTCTTGAGCCTTTCTGTCCTG
AAGCACGGCcggaaggtggtggcggggacCCAAAGCGGGGTCTTGCTCAT
CTATTCCTGGGGCGAGTGGCTGAACAGCTCGGATCGTTTCGTAGGCCACC
CggagacggtggaggccttggtgaaggtggacgaggagacctTGCTGACG
GGCTCGAGCGACGGCCTGATCCGCCTGTGCTCGGTGCTGCCCAACAGGTT
GCTGGGGGTGGTAGGCACCCACGATGCCTTCCCCGTGGAGGGCATGCGGC
TGTCGCGAGACGGCGAGGTGCTCGTCTCGGTGGCGCATGACAGTTGTGTC
AGGTTTTGGGACCTGAGTTCGGGAAGACAGTGAATGGCggatgatgaaga
cgaaATCTTGCCCCAGGTCttggacgtgggaggggattCTGAACTTTTTG
GACTGGACTTGCATCCTACGCAAGACATGTTAGCGCTGGGCCTTGTGGAT
GGCAGGGCTTTGCTGTATTCTTATctggagaaaggggcagTTTGCGCTTT
GCACGCCGAAACGGGCGCACACAAAGAAGCTTGCCGTGCTGTCTTGTTTG
AACCTTCTCTTGGTGTTCAAGTTTTTACTGCCTCCTCGGACAAGAGCATA
CGTGCGCTAGACATTGAGACGGGCAAGAAGGACTGGGACGTGGACGGTGC
CCATCCTGACGCGGTCAACTGCCTTACTTattggggagaagggagactCT
TAGTATCCGGTGACGATGTAGGCGGAGTGAAGCTGTGGGATTGCCGACAA
TCGAGGAAAGCCGTggtctcggtccacaagcacGAGGATTTCATTGCCGA
CCTCCTGGTCCACGAGGGCACCTTGTTCGCGGCCAGCGGGGACAACACTC
TATCAACATATGATCTGAGGCAGCGAAAGCTGGCAGCCCGCACCATGGAC
CAGGAGGATGAGCTCTTGAGCCTTTCTGTCCTGAAGCACGGCcggaaggt
ggtggcggggacCCAAAGCGGGGTCTTGCTCATCTATTCCTGGGGCGAGT
GGCTGAACAGCTCGGATCGTTTCGTAGGCCACCCggagacggtggaggcc
ttggtgaaggtggacgaggagacctTGCTGACGGGCTCGAGCGACGGCCT
GATCCGCCTGTGCTCGGTGCTGCCCAACAGGTTGCTGGGGGTGGTAGGCA
CCCACGATGCCTTCCCCGTGGAGGGCATGCGGCTGTCGCGAGACGGCGAG
GTGCTCGTCTCGGTGGCGCATGACAGTTGTGTCAGGTTTTGGGACCTGAG
TTCGGGAAGACAGTGAATGGCggatgatgaagacgaaATCTTGCCCCAGG
TCttggacgtgggaggggattCTGAACTTTTTGGACTGGACTTGCATCCT
ACGCAAGACATGTTAGCGCTGGGCCTTGTGGATGGCAGGGCTTTGCTGTA
TTCTTATctggagaaaggggcagTTTGCGCTTTGCACGCCGAAACGGGCG
CACACAAAGAAGCTTGCCGTGCTGTCTTGTTTGAACCTTCTCTTGGTGTT
CAAGTTTTTACTGCCTCCTCGGACAAGAGCATACGTGCGCTAGACATTGA
GACGGGCAAGAAGGACTGGGACGTGGACGGTGCCCATCCTGACGCGGTCA
ACTGCCTTACTTattggggagaagggagactCTTAGTATCCGGTGACGAT
GTAGGCGGAGTGAAGCTGTGGGATTGCCGACAATCGAGGAAAGCCGTggt
ctcggtccacaagcacGAGGATTTCATTGCCGACCTCCTGGTCCACGAGG
GCACCTTGTTCGCGGCCAGCGGGGACAACACTCTATCAACATATGATCTG
AGGCAGCGAAAGCTGGCAGCCCGCACCATGGACCAGGAGGATGAGCTCTT
GAGCCTTTCTGTCCTGAAGCACGGCcggaaggtggtggcggggacCCAAA
GCGGGGTCTTGCTCATCTATTCCTGGGGCGAGTGGCTGAACAGCTCGGAT
CGTTTCGTAGGCCACCCggagacggtggaggccttggtgaaggtggacga
ggagacctTGCTGACGGGCTCGAGCGACGGCCTGATCCGCCTGTGCTCGG
TGCTGCCCAACAGGTTGCTGGGGGTGGTAGGCACCCACGATGCCTTCCCC
GTGGAGGGCATGCGGCTGTCGCGAGACGGCGAGGTGCTCGTCTCGGTGGC
GCATGACAGTTGTGTCAGGTTTTGGGACCTGAGTTCGGGAAGACAGTGA

Synonyms

Publications