EWM29902.1, cds788 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|585112485|gb|EWM29902.1| (transducin wd-40 repeat-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0 Query: 1 MADDEDEILPQVLDVGGDSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGTLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDLSSGRQ 310 MADDEDEILPQVLDVGGDSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGTLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDLSSGRQ Sbjct: 1 MADDEDEILPQVLDVGGDSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGTLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDLSSGRQ 310
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|1176070911|ref|XP_020605340.1| (WD repeat-containing protein 55-like [Orbicella faveolata]) HSP 1 Score: 256.529 bits (654), Expect = 1.478e-80 Identity = 135/296 (45.61%), Postives = 200/296 (67.57%), Query Frame = 0 Query: 14 DVGGDSELFGLDLHPTQDMLALGLVDGRALLYSY-LEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLL--VHEGTLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDLS 306 D+ ++++F L HP +D++A G +DGR ++SY + +G L + HK+ACRA+ F S G+ +FTAS DKS++A+D+ +G ++ AH V C+ + L+V+GDD G VK WD RQ+ V++V +EDFI+D+ + TL A SGD TLS +++R++K+ R+ + E ELLS++V+K GRKVV GT G+L ++SWGEW + SDRF GHP ++++ V V E + TGS DG+IR +LPNR +G VG HD FPVE MRLSRDG++L S +HD ++FWD+S Sbjct: 15 DISFNNQVFDLSFHPNRDVIAAGEIDGRVTVHSYSVAEGN--HLLLDLHHHKKACRALSFS-SDGLYLFTASKDKSVQAVDMNSGAVAHVINRAHSSPVYCIKVITDS-LIVTGDDNGCVKFWDTRQA-ACVLTVADNEDFISDMACDAEKRTLLATSGDGTLSIFNIRRQKIEQRSDNMESELLSVAVVKGGRKVVCGTGDGILNLFSWGEWGDISDRFPGHPLSIDSCVAVSENVVCTGSMDGIIRAVHILPNRFVGTVGEHDDFPVERMRLSRDGDILASCSHDQSIKFWDVS 305
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|675165717|ref|XP_008891743.1| (hypothetical protein PPTG_02421 [Phytophthora parasitica INRA-310] >gi|566027143|gb|ETI50054.1| hypothetical protein F443_06303 [Phytophthora parasitica P1569] >gi|567964469|gb|ETK89954.1| hypothetical protein L915_06177 [Phytophthora parasitica] >gi|567993169|gb|ETL43352.1| hypothetical protein L916_06115 [Phytophthora parasitica] >gi|568022467|gb|ETL96536.1| hypothetical protein L917_05993 [Phytophthora parasitica] >gi|568052828|gb|ETM49690.1| hypothetical protein L914_06113 [Phytophthora parasitica] >gi|568107872|gb|ETN22496.1| hypothetical protein PPTG_02421 [Phytophthora parasitica INRA-310] >gi|570330808|gb|ETO78756.1| hypothetical protein F444_06366 [Phytophthora parasitica P1976] >gi|570954568|gb|ETP19825.1| hypothetical protein F441_06310 [Phytophthora parasitica CJ01A1] >gi|570989534|gb|ETP47737.1| hypothetical protein F442_06346 [Phytophthora parasitica P10297] >gi|970636090|gb|KUF80824.1| WD repeat-containing protein 55 [Phytophthora nicotianae]) HSP 1 Score: 256.914 bits (655), Expect = 3.205e-80 Identity = 134/290 (46.21%), Postives = 194/290 (66.90%), Query Frame = 0 Query: 18 DSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGT--LFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 DS++F +D HP +++A+G +DG +Y Y E+ L E H+EA RA+LF P G ++TAS+DKSIRA D G W AH AVN L + + SGDD G +K+WD RQ R + +H+D+I+ + L A SGD LS YDLR+ LA ++ + +DELLS++V+K+GRK+V G+Q GVL+I+SWG W + SDRF GHP++VEAL+KVDE+T+LTGSSDG++R+ + PN+LLG++G H+ FPVE ++ S D +++ SV+H + V FWD+ Sbjct: 15 DSQVFDIDFHPQAEIVAVGSIDGIVQVYKYSEEANTKVL--ELKNHQEAVRALLFAPD-GQTLYTASADKSIRAFDT-LGNPTWAEMRAHDHAVNRL-HELSANVFASGDDQGCIKIWDTRQHR-CLAEFTEHKDYISGFATNPAQDHLLATSGDGRLSAYDLRKNVLAGKSDELDDELLSVAVIKNGRKIVCGSQDGVLVIFSWGTWGDMSDRFPGHPDSVEALLKVDEDTVLTGSSDGIVRVVQLHPNKLLGLIGDHEDFPVENLKFSHDKKIIGSVSHTNKVHFWDV 298
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|698779251|ref|XP_009822669.1| (hypothetical protein H257_01256 [Aphanomyces astaci] >gi|574122330|gb|ETV87806.1| hypothetical protein H257_01256 [Aphanomyces astaci]) HSP 1 Score: 255.373 bits (651), Expect = 8.992e-80 Identity = 132/296 (44.59%), Postives = 195/296 (65.88%), Query Frame = 0 Query: 12 VLDVGGDSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEG--TLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 + DV S++F LD HP+++++A G++DG+ Y+Y +G C L H++ACR V+F G ++T SSDKSIRA D+ G W AH + VN L + + SGDD G VK+WD RQ R +V ++H D+I+D+ +E TL GD LS YDL++ K ++ + +DELLS+ ++K+GRKVV G+Q GVL+I+SW W + SDRF GHP++VE ++KVDE+T+LTGSSDG+IR+ + PN+LLG++G H+ PVE ++ S D ++ SVAH + V FWD+ Sbjct: 10 IPDVVLPSDVFDLDFHPSRNVVAAGMIDGKVQAYTYTPEGNTCVL--SLNHHQDACRVVMFSED-GSALYTGSSDKSIRAYDVNGGVL-WAELNAHLNPVNQL-HSISNNVFTSGDDQGCVKMWDVRQHR-CIVEWNEHTDYISDMTTNESKSTLLVTGGDGRLSVYDLKKNKFVQKSDELDDELLSVQIIKNGRKVVCGSQDGVLVIFSWDTWGDMSDRFPGHPDSVETILKVDEDTVLTGSSDGIIRVVQLHPNKLLGLIGDHEDMPVEVLKFSHDRRIVGSVAHSNKVHFWDV 299
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|673015430|ref|XP_008861676.1| (hypothetical protein H310_00614 [Aphanomyces invadans] >gi|574483274|gb|ETW10265.1| hypothetical protein H310_00614 [Aphanomyces invadans]) HSP 1 Score: 255.373 bits (651), Expect = 9.643e-80 Identity = 133/296 (44.93%), Postives = 195/296 (65.88%), Query Frame = 0 Query: 12 VLDVGGDSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEG--TLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 + DV S++F LD HPT++++A G++DG+ Y+Y +G C L H++ACR V F G +FTASSDKSIRA D+ G W AH + VN L + + SGDD G VK+WD RQ R +V ++H D+I+D+ ++ TL GD LS YDL++ K ++ + +DELLS+ ++K+GRKVV G+Q GVL+I+SW W + SDRF GHP++VE ++KVDE+T+LTGSSDG+IR+ + PN+LLG++G H+ PVE ++ S D ++ SV+H + V FWD+ Sbjct: 9 IPDVLLPSDVFDLDFHPTRNVVAAGMIDGKVQAYTYTPEGNDCVL--SLNHHQDACRVVKFAED-GNALFTASSDKSIRAFDVHGGVL-WAELNAHLNPVNHL-HTISNNVFASGDDQGCVKMWDVRQHR-CIVQWNEHTDYISDMATNDSKSTLLVTGGDGRLSVYDLKKNKFVQKSDELDDELLSVRIIKNGRKVVCGSQDGVLVIFSWDTWGDMSDRFPGHPDSVETILKVDEDTILTGSSDGIIRVVQIHPNKLLGLIGDHEDMPVEVLKFSHDKRIVGSVSHSNKVHFWDV 298
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|116784785|gb|ABK23471.1| (unknown [Picea sitchensis]) HSP 1 Score: 254.603 bits (649), Expect = 1.678e-79 Identity = 131/295 (44.41%), Postives = 195/295 (66.10%), Query Frame = 0 Query: 13 LDVGGDSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGT--LFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 +D+ + + F LD HP+ ++A+GL+ GR L+ Y++ + AH E+CRAV F + G V TAS D SI A ++ET ++ +D AH AVN L E + SGD+ G +K+WD RQ+ + HED+I+D+ T L SGD TLS ++LR+ K+ AR+ EDELLS++++KHG+KVV G+Q GVLL+YSWG + + DRFVGHP +V+AL+K+DE+T+LTGSSDG+IR+ S+LPN+++GV+G H ++P+E + S D VL S +HD ++ WD+ Sbjct: 1 MDIELEDQPFDLDFHPSNSIVAVGLITGRLQLFRYVDISSESERLWTVTAHTESCRAVRF-INAGSSVLTASPDCSILATNVETAQRVARLDNAHEAAVNRLINLTET-TIASGDEDGTIKVWDTRQN-SCCSTFKAHEDYISDMEFVPDTMQLLGTSGDGTLSVFNLRKNKVHARSEFSEDELLSVTLMKHGKKVVCGSQEGVLLLYSWGYFKDCIDRFVGHPHSVDALLKLDEDTVLTGSSDGIIRVVSILPNKMIGVIGEHSSYPIERLAFSHDRNVLGSASHDQILKLWDV 292
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|953503777|emb|CEG35343.1| (transducin family protein wd-40 repeat family protein [Plasmopara halstedii]) HSP 1 Score: 254.218 bits (648), Expect = 2.804e-79 Identity = 135/290 (46.55%), Postives = 192/290 (66.21%), Query Frame = 0 Query: 18 DSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVH--EGTLFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 DS++F +D HP +++A+G +DG +Y Y E+ V L E H EA RA+LF P G ++TAS+DKSIRA D GK W AH VN L E + VSGDD G +K+WD RQ R + +H D+I+ + + L A SGD LS Y+LR+ L ++ + +DELLS++V+K+GRKVV G+Q GVL+I+SWG W + SDRF GHP++VE L+KVDE+T+LTGSSDG++R+ V PN+LLG++G H+ PVE ++ S D +++ SV+H + V FWD+ Sbjct: 15 DSQVFDIDFHPQTNIVAVGCIDGIVQVYKYSEEANVKIL--ELKNHMEAVRALLFAPD-GQTLYTASADKSIRAFD-ALGKPTWAEMRAHEHPVNRLHELSEN-VFVSGDDQGCIKIWDTRQHR-CLAEFKEHSDYISGFATNPSQDHLLATSGDGRLSAYNLRKNALVGKSDELDDELLSVTVIKNGRKVVCGSQDGVLVIFSWGTWGDMSDRFPGHPDSVETLLKVDEDTVLTGSSDGIVRVVQVHPNKLLGLIGDHEDLPVENLKFSHDRKMIGSVSHTNKVHFWDV 298
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|970646527|gb|KUF86652.1| (hypothetical protein AM588_10001215 [Phytophthora nicotianae]) HSP 1 Score: 253.832 bits (647), Expect = 4.096e-79 Identity = 135/290 (46.55%), Postives = 193/290 (66.55%), Query Frame = 0 Query: 18 DSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGT--LFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 DS++F +D HP +++A+G +DG +Y Y E+ L E H+EA RA+LF P G ++TAS+DKSIRA D G W AH AVN L + + SGDD G +K+WD RQ R + +H+D+I+ + L A SGD LS YDLR+ LA ++ + +DELLS++V+K+GRK+V G+Q GVL+I+SWG W + SDRF GHP++VEAL+KVDE+T+LTGSSDG++R S PN+LLG++G H+ FPVE ++ S D +++ SV+H + V FWD+ Sbjct: 15 DSQVFDIDFHPQAEIVAVGSIDGIVQVYKYSEEANTKVL--ELKNHQEAVRALLFAPD-GQTLYTASADKSIRAFDT-LGNPTWAEMRAHDHAVNRL-HELSANVFASGDDQGCIKIWDTRQHR-CLAEFTEHKDYISGFATNPAQDHLLATSGDGRLSAYDLRKNVLAGKSDELDDELLSVAVIKNGRKIVCGSQDGVLVIFSWGTWGDMSDRFPGHPDSVEALLKVDEDTVLTGSSDGIVRYVST-PNKLLGLIGDHEDFPVENLKFSHDKKIIGSVSHTNKVHFWDV 297
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|301105341|ref|XP_002901754.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099092|gb|EEY57144.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 253.447 bits (646), Expect = 6.034e-79 Identity = 132/290 (45.52%), Postives = 190/290 (65.52%), Query Frame = 0 Query: 18 DSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGT--LFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 DS++F +D HP D++A+G +DG +Y Y E+ L E H+EA RA+LF P G ++TAS+DKSIRA D G W AH VN L + + SGDD G +K+WD RQ R + +H D+I+ + L A SGD LS YDLR+ L ++ + +DELLS++V+K+GRK+V G+Q GVL+I+SWG W + SDRF GHP++VEAL+KVDE+T+LTGSSDG++R+ + PN+LLG++G H+ PVE ++ S D +++ SV+H + V FWD+ Sbjct: 15 DSQVFDIDFHPQADIVAVGCIDGIVQVYKYSEEANTKVL--ELKNHQEAVRALLFAPD-GQTLYTASADKSIRAFDT-LGNPTWAEMRAHDHPVNRL-HELSANIFASGDDQGMIKIWDTRQHR-CLAEFKEHNDYISGFATNPAQDHLLATSGDGRLSAYDLRKNVLVGKSDELDDELLSVAVIKNGRKIVCGSQDGVLVIFSWGTWGDMSDRFPGHPDSVEALLKVDEDTVLTGSSDGIVRVVQLHPNKLLGLIGDHEDLPVENLKFSHDKKIIGSVSHTNKVHFWDV 298
BLAST of EWM29902.1 vs. NCBI_GenBank
Match: gi|1214708924|gb|OWZ20154.1| (hypothetical protein PHMEG_0005474 [Phytophthora megakarya]) HSP 1 Score: 253.062 bits (645), Expect = 7.657e-79 Identity = 133/290 (45.86%), Postives = 192/290 (66.21%), Query Frame = 0 Query: 18 DSELFGLDLHPTQDMLALGLVDGRALLYSYLEKGAVCALHAETGAHKEACRAVLFEPSLGVQVFTASSDKSIRALDIETGKKDWDVDGAHPDAVNCLTYWGEGRLLVSGDDVGGVKLWDCRQSRKAVVSVHKHEDFIADLLVHEGT--LFAASGDNTLSTYDLRQRKLAARTMDQEDELLSLSVLKHGRKVVAGTQSGVLLIYSWGEWLNSSDRFVGHPETVEALVKVDEETLLTGSSDGLIRLCSVLPNRLLGVVGTHDAFPVEGMRLSRDGEVLVSVAHDSCVRFWDL 305 DS++F +D HP D++A+G + G +Y Y E+ L E H+EA RA+LF P G ++TAS+DKSIRA D G W AH + VN L + + SGDD G +K+WD RQ R + +H D+I+ + L A SGD LS YDLR+ LA ++ + +DELLS++V+K+GRK+V G+Q GVL+I+SWG W + SDRF GHP++VEAL+KVDE+T+LTGSSDG++R+ + PN+LLG++G H+ FPVE ++ S D +++ SV+H + V FWD+ Sbjct: 15 DSQVFDIDFHPLTDIVAVGSISGVVEVYKYSEETNTKVL--ELKNHQEAVRALLFAPD-GQTLYTASADKSIRAFDT-LGNPTWAEMRAHENPVNRL-HELSANVFASGDDQGCIKIWDTRQHR-CLSEFKEHTDYISGFATNPAHDHLLATSGDGRLSAYDLRKNVLAGKSDELDDELLSVAVIKNGRKIVCGSQDGVLVIFSWGTWGDMSDRFPGHPDSVEALLKVDEDTVLTGSSDGIVRVVQLHPNKLLGLIGDHEDFPVENLKFSHDKKIIGSVSHTNKVHFWDV 298 The following BLAST results are available for this feature:
BLAST of EWM29902.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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