rna7863, rna7863 (mRNA) Nannochloropsis gaditana

Overview
Namerna7863
Unique Namerna7863
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1720
Alignment locationCM002475.1:12420..14109 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100471g2.2041.mrna
Orig protein idgnl|cribi|Naga_100471g2.2041
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002475.1supercontigCM002475.1:12420..14109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100471g2gene7616Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22831.1cds7841Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7863rna7863-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7863 ID=rna7863|Name=rna7863|organism=Nannochloropsis gaditana|type=mRNA|length=1720bp
CCAAGTACACCAAGTTATCGGCGAGAAATGTGTCCTTCAGTCGTTCGCAA
GTACGGAGAGGCCTTCCCATCCATTCTCGTTCATCATGACGTACTGTTAG
ACGCTTAAACAACCCCTGACCCCCTTTTTCTACATTGAGAAAAGGTTCGG
TGCCTTCTGGACACCTCGCAGTGGAAGGTGCCTCAACCACGGCGTGAGCT
ATCGGATCTTATCGTGGCGACCCGGCGTTATCTGCGATTTTTCCTACGGT
GCCTTCTATTTCGTTTTAACAAATAGAAATGCAGGCGCTCCTTTTCTAAT
GAATCCATCCACCGCTTCAAGCATAACCTCCTCAGTATGGACACCTATTC
GGGTAGATCTCGTCCCGTTCCTGCCTAATTCCTCGCCCAGTGAGGGTGCG
AAGCTCGCAGCTGCGCAGGCCATTCGTCAGGCCTGCGAGACCGATGGTCT
CTTTCTCCTAGATTATAGAGGATGGGTTCGGACACGAGATGTTCTAAGAG
TCGCAGGACCCGCCCCTAGCTTTGATATAGGAACAACAAGTGGCGGTGCG
GGGAAATCGAGGTCATCCAACCGCTCAACGGAGAAACATGTGGCAGCGGA
GACGGACGACAGCAAAGAAGCAATTGATCACACGTGCATGAAGGCATGCG
GGCCTATTAACCGTCGAAGACTTTCATCGTATCCTCGCGTCTTGGATGCC
ATCGCTTCCTTCTTCGCTCTGCCCCTGCAAGAGAAAGAGGCCCTGCCCTC
CCTTCACTCGCAAGGCTTTTCACGCGGCTACATTCCTGTCTTGGGGGAAA
GCGGGTTAAAGGGACAATTTGTCGAGTGGAAGGAGGGCTTCAGCATGGGT
TACGAGTCTGCCGACGGAGGGGAAGAGGGGAGCAGCGAAGGGGCGAGGGA
CCCTTCGGCCGGTGCCGCCTGGGGTCAGAGGGAGAGAGCTGATGTCGCGA
CAAGGAGAGCCAGCTCGCTCTCGCCCTCCCCTCAAAACCCATTGGAAGGT
CCCAATGTCTGGCCTACATCCTCCACTGCCCTCGCTGCCCTCCGGGGGGG
CGGGACCGGGAAAGGAGGGACGGCCTGGAGAGAAGAGATGCAAGCTTTCT
TTGTGGACATGATCGCCCTCAGCCGGGCCCTTTCCCGGGCCCTCTCTCTC
GCCCTGGGCAGGGAGGAAGGCTGGCTAGAAGCAGTGTGCGGGGAGGGTGG
GGAACGCATCTCCCTCCTGCGTGCCTTCCACTACATGTCGTCCTCTTCCC
TCCCTCCGTCCATCCCCCCCTCTAGGGCACTGGGCTCGAGCCCTCACACG
GACTGGGGCCTGTTCACCATCATCCTCCAGCAGAGACAGGAGTCGATAGG
GGAAGAGGAGGGCGACGAGGAGGAGGGAGGCCTGCAATTTCGAGGGCGGC
CGCAGGGAGCGCGGGTGGAAGCAGGAGAGGAGGGAGAGGAGTTGGAGTGG
GTGAGAGTGCCGTGGGTGGCGGAAACTTTGATCGTGAACTGCGGGGATTT
CCTAGCCATGCTTTCGGAGAGATTAGTGGCTGAGGGCAAAGCCCGGGCAG
GAGGACGGAGGGAGGGAGGAAGGGAGGGAGCGAGCGAAAGAGGGAGACGG
CCCTTCCATTCACCTGTCCACAGGGTGACACTCTCCCCGAGCCGGGATCG
GACCTCTCTCGTATTCTTTTTCTACCCCTCCTACGATACACCCATGCCGG
CTGCGGGGCGGGAGGGGTTG
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protein sequence of rna7863

>rna7863-protein ID=rna7863-protein|Name=rna7863|organism=Nannochloropsis gaditana|type=polypeptide|length=455bp
MGPERENAARRLSSRAPPPLTFMLPSPPAFVWPPSQHFSLLKSPWRPPAS
LISLLPLILGTLIQCPLDVDLCFSSRANAVPVSTASTTETLLSGRLFHSG
TDEKGSGRTDFKTSLSIRDVAIGSAGSPGTPHFAASSSLSSLPSIVVKGT
SSPVTRPAQSGIPALQSLCGSTGASSATRSSLLYSSLRVIGQGASGITYV
LPADSYDSDITLPGLDMQELGNNKDVVLKIGTGDAAVKALRNEASLLQRL
ADRGVGKGVEQLVGFAECQISADGEPLHARYENDADKGSGESSILRPGRQ
ARSMPGKVEQRAVLAMQPYWPQAEQVDRIQGTEGVRELVRLLIRDVAVQG
GVVVSDVQVLESGVGEEPAADGNHGTFLLIDLTEGMVLVENIEESPAEKS
PVANAALRSFLGEVASLVAYTAEAHTAAVEESKTWGMPVLCELVREAFPM
AAEEL
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mRNA from alignment at CM002475.1:12420..14109-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7863 ID=rna7863|Name=rna7863|organism=Nannochloropsis gaditana|type=mRNA|length=1690bp|location=Sequence derived from alignment at CM002475.1:12420..14109- (Nannochloropsis gaditana)
TCGTGTCCCAAGGGCGTACACCACCACACCGCGCACCCGTGCATTTACAC
ATTTCTGACCACAAACAGCCAGCCGTGACAGAAGAGGACATGTAGCGGCG
TAGTGGACAACTCCGCAGTGCGAATGGGGCCAGAAAGAGAGAATGCTGCC
CGGAGACTCTCTTCACGCGCTCCGCCTCCTCTTACGTTCATGTTGCCGTC
ACCTCCCGCCTTCGTCTGGCCACCCTCGCAGCATTTTTCACTCCTGAAGT
CGCCCTGGCGTCCACCTGCCTCATTAATATCACTTTTGCCACTCATTCTC
GGCACGCTTATCCAGTGTCCATTGGACGTTGACTTGTGCTTCTCGTCCCG
AGCAAACGCCGTCCCCGTCAGCACTGCATCGACCACGGAAACACTTTTAT
CGGGTCGTCTCTTTCACAGCGGCACCGATGAGAAAGGGAGCGGTAGGACG
GATTTTAAGACATCTTTATCAATAAGAGATGTCGCAATCGGCAGTGCGGG
CTCACCTGGAACACCGCATTTTGCTGCTTCATCCTCACTCTCGTCCCTGC
CAAGCATCGTGGTTAAAGGAACCTCGTCACCTGTCACTCGCCCAGCACAG
TCTGGAATTCCAGCTCTACAGTCCCTTTGCGGCAGTACTGGCGCTTCTTC
GGCTACAAGGTCGTCGTTGCTATATTCCTCGTTGCGTGTCATAGGTCAGG
GAGCCTCGGGCATCACGTACGTCCTTCCTGCCGACAGCTACGACTCCGAT
ATCACGCTCCCGGGACTTGACATGCAAGAACTGGGTAATAATAAGGATGT
GGTGCTCAAAATAGGCACAGGAGATGCGGCTGTGAAGGCTCTGCGGAACG
AGGCCTCTCTGCTCCAACGGCTGGCAGACCGCGGCGTCGGGAAGGGGGTA
GAGCAGCTGGTAGGATTCGCTGAGTGCCAGATCTCTGCGGACGGGGAGCC
ATTGCATGCTCGCTATGAGAACGATGCAGACAAGGGTAGCGGCGAGAGCA
GCATCCTTCGCCCTGGCAGACAGGCGCGGAGCATGCCTGGGAAGGTCGAG
CAGAGGGCTGTGTTAGCAATGCAACCGTACTGGCCCCAGGCCGAGCAAGT
GGATCGGATTCAGGGTACGGAGGGTGTAAGGGAGCTTGTTCGCTTGCTGA
TCAGGGATGTCGCAGTGCAAGGTGGCGTCGTTGTGAGTGATGTACAGGTG
CTGGAGTCCGGGGTGGGGGAGGAACCGGCAGCAGATGGGAACCATGGCAC
TTTCTTATTGATAGATCTCACAGAGGGGATGGTGTTGGTGGAAAACATCG
AAGAGAGTCCAGCCGAAAAGAGCCCTGTTGCCAATGCAGCCCTCCGATCA
TTTCTTGGGGAGGTTGCTTCTTTGGTCGCATACACAGCCGAGGCTCACAC
AGCGGCTGTTGAGGAGTCGAAAACATGGGGTATGCCTGTCCTGTGCGAGC
TTGTCAGAGAGGCGTTTCCAATGGCAGCGGAAGAACTTTAAAGGGGTAGG
ACAGCAACGCACGAGGCTTGAATATGCCCTTTGCTAGGCCGTTCAGGTCC
ACAGAATGTGCTTCAAAGCCAAGATGGAGGTATAAAAATGCTCAACACAA
GGGTGTCTTATGGTGAGAACTCCGGCTCATGATCTCAGCATTCTTCAGGC
AAAGTAATGCACACGCTGACCGACATCTGTCACGAGAAGC
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Coding sequence (CDS) from alignment at CM002475.1:12420..14109-

>rna7863 ID=rna7863|Name=rna7863|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at CM002475.1:12420..14109- (Nannochloropsis gaditana)
ATGGGGCCAGAAAGAGAGAATGCTGCCCGGAGACTCTCTTCACGCGCTCC
GCCTCCTCTTACGTTCATGTTGCCGTCACCTCCCGCCTTCGTCTGGCCAC
CCTCGCAGCATTTTTCACTCCTGAAGTCGCCCTGGCGTCCACCTGCCTCA
TTAATATCACTTTTGCCACTCATTCTCGGCACGCTTATCCAGTGTCCATT
GGACGTTGACTTGTGCTTCTCGTCCCGAGCAAACGCCGTCCCCGTCAGCA
CTGCATCGACCACGGAAACACTTTTATCGGGTCGTCTCTTTCACAGCGGC
ACCGATGAGAAAGGGAGCGGTAGGACGGATTTTAAGACATCTTTATCAAT
AAGAGATGTCGCAATCGGCAGTGCGGGCTCACCTGGAACACCGCATTTTG
CTGCTTCATCCTCACTCTCGTCCCTGCCAAGCATCGTGGTTAAAGGAACC
TCGTCACCTGTCACTCGCCCAGCACAGTCTGGAATTCCAGCTCTACAGTC
CCTTTGCGGCAGTACTGGCGCTTCTTCGGCTACAAGGTCGTCGTTGCTAT
ATTCCTCGTTGCGTGTCATAGGTCAGGGAGCCTCGGGCATCACGTACGTC
CTTCCTGCCGACAGCTACGACTCCGATATCACGCTCCCGGGACTTGACAT
GCAAGAACTGGGTAATAATAAGGATGTGGTGCTCAAAATAGGCACAGGAG
ATGCGGCTGTGAAGGCTCTGCGGAACGAGGCCTCTCTGCTCCAACGGCTG
GCAGACCGCGGCGTCGGGAAGGGGGTAGAGCAGCTGGTAGGATTCGCTGA
GTGCCAGATCTCTGCGGACGGGGAGCCATTGCATGCTCGCTATGAGAACG
ATGCAGACAAGGGTAGCGGCGAGAGCAGCATCCTTCGCCCTGGCAGACAG
GCGCGGAGCATGCCTGGGAAGGTCGAGCAGAGGGCTGTGTTAGCAATGCA
ACCGTACTGGCCCCAGGCCGAGCAAGTGGATCGGATTCAGGGTACGGAGG
GTGTAAGGGAGCTTGTTCGCTTGCTGATCAGGGATGTCGCAGTGCAAGGT
GGCGTCGTTGTGAGTGATGTACAGGTGCTGGAGTCCGGGGTGGGGGAGGA
ACCGGCAGCAGATGGGAACCATGGCACTTTCTTATTGATAGATCTCACAG
AGGGGATGGTGTTGGTGGAAAACATCGAAGAGAGTCCAGCCGAAAAGAGC
CCTGTTGCCAATGCAGCCCTCCGATCATTTCTTGGGGAGGTTGCTTCTTT
GGTCGCATACACAGCCGAGGCTCACACAGCGGCTGTTGAGGAGTCGAAAA
CATGGGGTATGCCTGTCCTGTGCGAGCTTGTCAGAGAGGCGTTTCCAATG
GCAGCGGAAGAACTTTAA
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Synonyms
Publications