rna7857, rna7857 (mRNA) Nannochloropsis gaditana

Overview
Namerna7857
Unique Namerna7857
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1117
Alignment locationCM002474.1:136891..137432 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100295g5.2581.mrna
Orig protein idgnl|cribi|Naga_100295g5.2581
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:136891..137432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100295g5gene7610Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7857rna7857-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22839.1cds7835Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7857 ID=rna7857|Name=rna7857|organism=Nannochloropsis gaditana|type=mRNA|length=1117bp
GCCCAAGGCGGCTATAAACATGTAATTGACTAACGAGAGAGCCCTCAAAA
AACCACTTTAATTCGCAAAGACCTTCTGACAGGCACTCACGCGGGTATTA
CTGTGGCCACGCACCTCAACCACAGCCGTGGCAAACCAAAGGACGCATTG
TGGCATACTGCCAAGCTTACCGGGATAGCTGACGTAATTTTGCGTACATC
GTCAGAAACAGAAAAGGCCGTATCGCCGTGCCACAGGCATAGCTGCCTGA
TAAAGATTGTGCTCCGGAAGAAAGTAGATGCATCAGCCTTCACCAGACGG
TAGTAACCTGCTCCCTGTGCCTCTTCTTCTTCATAGTGCGGCGCAATGGG
GGCTTGAAAAGATAGTCCTATGTCTATTGGAATCCCATTCCGAGGCCATC
GATGTGACGGACGAGCACGGATGGACGCCCCTGATGCTGGCGGCCTCCCG
AGGACATAGCTCCGTGGTGGGGTGCCTGCTCGACCGCGGCGCCGACGTCC
ACCTGCGAGACCTGGACGGGATGACAGCCTTGACACATGCCGCTGCCGGG
CGACTGGGCAATGCCAAGGTGGTACAGCTATTGCTGGAAAAAGGCGGGGC
GGACCCTGGGGCGGCCTGTAAGTGGGGGTCGACCCCGCTCATGGAGGCGG
CGGCCTTGGGCTTCGAGGGGCGCATGCAGGCCCTCCTCACGCGCAGGAGG
GGAGCAAATCAAGGGCGTGGGGGGAAAAGCGAGACGAAGAAAACATGGAG
TGGCGGAAGTCGTGTGAGTATTGACCGCCAGGATGGGAAAGGCGCGACGG
CTTTGTTTAAGGTGAGGGCGAGGGGAGGGACGAGGCCCGAGAGAGAGATA
TGAAAAAGAAAGTGAAGCAATCCGTACAAACTCCTTGTAGCACAATGTTG
GGGTGTGATATCCAGGCACATGGACAATCATGTTGATAAAATGCAATGCC
CTCCAGGCCTGCCTGTACGGACGGGTGGGGGCCGTTAAGCTCCTCCTCGG
CGCAGGCGCGGACCCCAGGATCCCCACCCACGACGGCCTCTCGCCCATGC
TCGCCACCCTGTCCTGCCCACGCGGCAGGGGACTACAAATAGCGCGCTTG
CTCGAGGTGGGTCGGAC
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protein sequence of rna7857

>rna7857-protein ID=rna7857-protein|Name=rna7857|organism=Nannochloropsis gaditana|type=polypeptide|length=145bp
MTPRKMRGSPSMTELTIQCNIYPWILQHNWFEFKLTDCIILLTTPMDATN
EILRCVPNPVKENVYPSSQENTLMNDGRSSSAPSLVDVAVRLPPAFTFVP
NASTGGAPASGARVVRSATWQGGAPADIVIGVKTIRRRTRRSAAV
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mRNA from alignment at CM002474.1:136891..137432+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7857 ID=rna7857|Name=rna7857|organism=Nannochloropsis gaditana|type=mRNA|length=542bp|location=Sequence derived from alignment at CM002474.1:136891..137432+ (Nannochloropsis gaditana)
ATGACCCCGAGGAAAATGCGTGGCTCGCCTTCGATGACGGAGCTAACCAT
TCAATGCAATATTTATCCTTGGATTTTGCAACACAATTGGTTTGAGTTTA
AGCTCACTGACTGCATTATATTGTTGTTAGTCTAAATTTATGATATTTTG
GTGTCGTCAAGACCTATCATCGCCCTGAGAACTACTCCTATGGATGCTAC
CAACGAAATACTACGCTGTGTTCCCAATCCTGTAAAGGAAAACGTTTACC
CAAGTTCGCAGGAAAATACTTTAATGAATGATGGTCGCTCGTCAAGTGCA
CCCAGTCTTGTGGATGTGGCCGTACGCCTACCTCCAGCTTTCACATTTGT
CCCGAACGCTTCCACGGGTGGTGCTCCTGCTTCTGGAGCACGAGTCGTCC
GATCGGCTACCTGGCAAGGCGGGGCACCCGCAGTGAAAGGCCAGACCCCC
GAGCCGTGAGCTTGTCAACATCTGAGTAACAGGACATTGTGATTGGTGTG
AAAACTATTCGGAGGCGCACGAGAAGATCTGCTGCAGTTTGA
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Coding sequence (CDS) from alignment at CM002474.1:136891..137432+

>rna7857 ID=rna7857|Name=rna7857|organism=Nannochloropsis gaditana|type=CDS|length=1314bp|location=Sequence derived from alignment at CM002474.1:136891..137432+ (Nannochloropsis gaditana)
ATGACCCCGAGGAAAATGCGTGGCTCGCCTTCGATGACGGAGCTAACCAT
TCAATGCAATATTTATCCTTGGATTTTGCAACACAATTGGTTTGAGTTTA
AGCTCACTGACTGCATTATATTGTTAACTACTCCTATGGATGCTACCAAC
GAAATACTACGCTGTGTTCCCAATCCTGTAAAGGAAAACGTTTACCCAAG
TTCGCAGGAAAATACTTTAATGAATGATGGTCGCTCGTCAAGTGCACCCA
GTCTTGTGGATGTGGCCGTACGCCTACCTCCAGCTTTCACATTTGTCCCG
AACGCTTCCACGGGTGGTGCTCCTGCTTCTGGAGCACGAGTCGTCCGATC
GGCTACCTGGCAAGGCGGGGCACCCGCAGACATTGTGATTGGTGTGAAAA
CTATTCGGAGGCGCACGAGAAGATCTGCTGCAGTTTGAATGACCCCGAGG
AAAATGCGTGGCTCGCCTTCGATGACGGAGCTAACCATTCAATGCAATAT
TTATCCTTGGATTTTGCAACACAATTGGTTTGAGTTTAAGCTCACTGACT
GCATTATATTGTTAACTACTCCTATGGATGCTACCAACGAAATACTACGC
TGTGTTCCCAATCCTGTAAAGGAAAACGTTTACCCAAGTTCGCAGGAAAA
TACTTTAATGAATGATGGTCGCTCGTCAAGTGCACCCAGTCTTGTGGATG
TGGCCGTACGCCTACCTCCAGCTTTCACATTTGTCCCGAACGCTTCCACG
GGTGGTGCTCCTGCTTCTGGAGCACGAGTCGTCCGATCGGCTACCTGGCA
AGGCGGGGCACCCGCAGACATTGTGATTGGTGTGAAAACTATTCGGAGGC
GCACGAGAAGATCTGCTGCAGTTTGAATGACCCCGAGGAAAATGCGTGGC
TCGCCTTCGATGACGGAGCTAACCATTCAATGCAATATTTATCCTTGGAT
TTTGCAACACAATTGGTTTGAGTTTAAGCTCACTGACTGCATTATATTGT
TAACTACTCCTATGGATGCTACCAACGAAATACTACGCTGTGTTCCCAAT
CCTGTAAAGGAAAACGTTTACCCAAGTTCGCAGGAAAATACTTTAATGAA
TGATGGTCGCTCGTCAAGTGCACCCAGTCTTGTGGATGTGGCCGTACGCC
TACCTCCAGCTTTCACATTTGTCCCGAACGCTTCCACGGGTGGTGCTCCT
GCTTCTGGAGCACGAGTCGTCCGATCGGCTACCTGGCAAGGCGGGGCACC
CGCAGACATTGTGATTGGTGTGAAAACTATTCGGAGGCGCACGAGAAGAT
CTGCTGCAGTTTGA
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Synonyms
Publications