rna7852, rna7852 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7852
Unique Name	rna7852
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1674
Alignment location	CM002474.1:126608..128606 -

Link to JBrowse

Properties


Property Name	Value
Product	splicing arginine serine-rich 1 9
Orig transcript id	gnl\|cribi\|Naga_100293g3.8354.mrna
Orig protein id	gnl\|cribi\|Naga_100293g3.8354
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:126608..128606 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100293g3	gene7605	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7852	rna7852-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22848.1	cds7830	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:126608..128606-
coding sequence from alignment at CM002474.1:126608..128606-

mRNA sequence

>rna7852 ID=rna7852|Name=rna7852|organism=Nannochloropsis gaditana|type=mRNA|length=1674bp
AGGCCTGAAATTGTGCTGCAGTTTCAAACATAGCAGGGCTGGGGTCTTGA
ATCGATAAGTCTTCGCAGTGGTCATGTATGGGTGCGTACGGCCCCCTGGG
CCGCATTTATTATGTTTGCCGAACCCCCCCAAGTGCTCAACCCGAAGGAG
GAGAAATCCTTCTCCAGTGGAGAAACCCTCTGTCTGCTGCAAATGTGACG
CCCACTCGATCATCTCTGTCTTTTAGCCTCCAGAATGCCTCAAATACGGT
GATACTTGTAAAATTGTAGGTTCGAAGTCATGTAGGCCGCTTAAGTGTCA
TCATACTTCTGGTCTATCCCCTCCCCTTTCTCCTCAGCCATAGATACAGG
GTTCGCGGGACGAGATCAAAGTAATTGAGTTCACTGCACCCAAGCAATCA
TGGCCGCACGCGTATATGTGGGCAACTTGCCCATGGACATCCGAGAGCGC
GACGTGGAAGACCTTTTTACCAGATATGGCAACGTGACGAACGTGGACCT
GAAGACTCCCGCGCGGCCCCCCGCCTACGCCTTTGTCACTTTTGACGATC
GCCGTGACGCTGAGGATGCTGTGAGGGCACGAGACAACTACCAGCTCCAG
GAAGGGAACAGGCTCCGCGTGGAGATGGCGCGCGGGGGGGGCGGGGACGG
CGGGAGGGGAGGTGGTTGGGAGGGAGGGAGGGGGGGGTATGGCGGAGGAG
GAGGGTATGATGGAGGGAGAGGCGGAGGGTACGGTGATAGGTACGGAGGG
GACCGGCCTTACGGCGATCGTGGGATGGGCGGAGGACGAGGGGGAGGGGG
AGGGAAGCGCACGGAATATCAGCTGATCGTCACGGACTTGCCCCCGTCGG
CGTCGTGGCAAGACCTGAAGGACCACATGCGAGGGTCGGGGGGCGACGTG
TGCTACTCCGACGTGGACAGGAAGGGAGGAGGACTGGTGGAGTTCACGCG
GGAGGACGATATGCTGGAGGCTCTGGAGCGTTTGGATCGCAGCGAATTCC
GCAACCGCTTCGACACCTGCGAAATCCGCGTGCGTCTGCCCAAGGACTCC
CCCTTCGGCCGGCGGGGGGACGGGGGGGAGGGCGGAGTCGGAGCCGGAGT
CGCAGCCCCCGAGGCCGTCCTGGTTCCCGCTCTCGCTCCAGGTCCCCTGC
CTCCTCCTCCCCTCGACGACCTCGAGGCCGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAAGGACAGAAGCGAGTCCCGATCTCCGTCG
CGGTCCCCTCCTCGCAGGCGGGAGCGCTCATCTTCCCCTCCCGGCCGCTC
CCGCTCCCGCTCTGCGTCGAGGTGAATCCATGGAGGCTGGCAAAAGACGT
AAAGTAAGCTTGATTGAGGAGTGACTGATGGGGCCCGCACTGGGAGAGGA
GCGAGGCGGGCGCGACGGCGGGGGTGAGCATTGAAGAGGGGGGCGTTGAG
TTTGAGAGTAGGGTATAAGGAGAGAGGGCGAGAGCAAAGCGGGCGAGCCA
GGCGAGAAATCCAGTCACAGGAGCAAAGAAATCAGGCTAGATGGCCCCTT
ACCATCCATGTGGTCGGCGCAGGAACGTCTCCTCGCCTGGCCTTCCACGT
CTTCCTACGGAAATGGGAGCTTTTGGGGGTTTCCTCTCGTAGTATTTATG
TTTGGTACGTCCCCGCAGTTTCTT

protein sequence of rna7852

>rna7852-protein ID=rna7852-protein|Name=rna7852|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRG
MGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRK
GGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDG
GEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGR
TEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE

mRNA from alignment at CM002474.1:126608..128606-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7852 ID=rna7852|Name=rna7852|organism=Nannochloropsis gaditana|type=mRNA|length=1999bp|location=Sequence derived from alignment at CM002474.1:126608..128606- (Nannochloropsis gaditana)
AGGCCTGAAATTGTGCTGCAGTTTCAAACATAGCAGGGCTGGGGTCTTGA
ATCGATAAGTCTTCGCAGTGGTCATGTATGGGTGCGTACGGCCCCCTGGG
CCGCATTTATTATGTTTGCCGAACCCCCCCAAGTGCTCAACCCGAAGGAG
GAGAAATCCTTCTCCAGTGGAGAAACCCTCTGTCTGCTGCAAATGTGACG
CCCACTCGATCATCTCTGTCTTTTAGCCTCCAGAATGCCTCAAATACGGT
GATACTTGTAAAATTGTAGGTTCGAAGTCATGTAGGCCGCTTAAGTGTCA
TCATACTTCTGGTCTATCCCCTCCCCTTTCTCCTCAGCCATAGATACAGG
GTTCGCGGGACGAGATCAAAGTAATTGAGTTCACTGCACCCAAGCAATCA
TGGCCGCACGCGTATATGTGGGCAACTTGCCCATGGACATCCGAGAGCGC
GACGTGGAAGACCTTTTTACCAGATATGGCAACGTGACGAACGTGGACCT
GAAGACTCCCGCGCGGTGAGGAGGGAGGAGGGAAGAAATGGCAAGGAGAA
GAAGAAGAGGAAAGGGTGTGCGGGGACTGTCAGCGATCAACAGCGTGGAA
GGCATGGATAGGAAAAGCGTCAGGATAGAGTATGCCGTGTGGACTGCCCG
ATGAAGTGGAAGCCTGCGCCTTCAAATTCTATATCACGATGCGCGCCTCA
TAGCCCGCCACATCCTCTACGCCTCTGCCTTCTTCCGCAGGCCCCCCGCC
TACGCCTTTGTCACTTTTGACGATCGCCGTGACGCTGAGGATGCTGTGAG
GGCACGAGACAACTACCAGCTCCAGGAAGGGAACAGGCTCCGCGTGGAGA
TGGCGCGCGGGGGGGGCGGGGACGGCGGGAGGGGAGGTGGTTGGGAGGGA
GGGAGGGGGGGGTATGGCGGAGGAGGAGGGTATGATGGAGGGAGAGGCGG
AGGGTACGGTGATAGGTACGGAGGGGACCGGCCTTACGGCGATCGTGGGA
TGGGCGGAGGACGAGGGGGAGGGGGAGGGAAGCGCACGGAATATCAGCTG
ATCGTCACGGACTTGCCCCCGTCGGCGTCGTGGCAAGACCTGAAGGACCA
CATGCGAGGGTCGGGGGGCGACGTGTGCTACTCCGACGTGGACAGGAAGG
GAGGAGGACTGGTGGAGTTCACGCGGGAGGACGATATGCTGGAGGCTCTG
GAGCGTTTGGATCGCAGGTGAGGGGAGAGGTCGGGGGAACGCTTGGCAAG
GGGGGTAGTCTGCAGATCCCGACCATCTCATGCCATTTCCCCTTTCTGCC
CCTCCCCCCCTCTCCAGCGAATTCCGCAACCGCTTCGACACCTGCGAAAT
CCGCGTGCGTCTGCCCAAGGACTCCCCCTTCGGCCGGCGGGGGGACGGGG
GGGAGGGCGGAGTCGGAGCCGGAGTCGCAGCCCCCGAGGCCGTCCTGGTT
CCCGCTCTCGCTCCAGGTCCCCTGCCTCCTCCTCCCCTCGACGACCTCGA
GGCCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGA
CAGAAGCGAGTCCCGATCTCCGTCGCGGTCCCCTCCTCGCAGGCGGGAGC
GCTCATCTTCCCCTCCCGGCCGCTCCCGCTCCCGCTCTGCGTCGAGGTGA
ATCCATGGAGGCTGGCAAAAGACGTAAAGTAAGCTTGATTGAGGAGTGAC
TGATGGGGCCCGCACTGGGAGAGGAGCGAGGCGGGCGCGACGGCGGGGGT
GAGCATTGAAGAGGGGGGCGTTGAGTTTGAGAGTAGGGTATAAGGAGAGA
GGGCGAGAGCAAAGCGGGCGAGCCAGGCGAGAAATCCAGTCACAGGAGCA
AAGAAATCAGGCTAGATGGCCCCTTACCATCCATGTGGTCGGCGCAGGAA
CGTCTCCTCGCCTGGCCTTCCACGTCTTCCTACGGAAATGGGAGCTTTTG
GGGGTTTCCTCTCGTAGTATTTATGTTTGGTACGTCCCCGCAGTTTCTT

Coding sequence (CDS) from alignment at CM002474.1:126608..128606-

>rna7852 ID=rna7852|Name=rna7852|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002474.1:126608..128606- (Nannochloropsis gaditana)
CGAATTCCGCAACCGCTTCGACACCTGCGAAATCCGCGTGCGTCTGCCCA
AGGACTCCCCCTTCGGCCGGCGGGGGGACGGGGGGGAGGGCGGAGTCGGA
GCCGGAGTCGCAGCCCCCGAGGCCGTCCTGGTTCCCGCTCTCGCTCCAGG
TCCCCTGCCTCCTCCTCCCCTCGACGACCTCGAGGCCGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGACAGAAGCGAGTCCCGAT
CTCCGTCGCGGTCCCCTCCTCGCAGGCGGGAGCGCTCATCTTCCCCTCCC
GGCCGCTCCCGCTCCCGCTCTGCGTCGAGGTGAATCCATGGAGGCTGGCA
AAAGACGTAAAGTAAGCTTGATTGAGGAGTGAATGGCGCGCGGGGGGGGC
GGGGACGGCGGGAGGGGAGGTGGTTGGGAGGGAGGGAGGGGGGGGTATGG
CGGAGGAGGAGGGTATGATGGAGGGAGAGGCGGAGGGTACGGTGATAGGT
ACGGAGGGGACCGGCCTTACGGCGATCGTGGGATGGGCGGAGGACGAGGG
GGAGGGGGAGGGAAGCGCACGGAATATCAGCTGATCGTCACGGACTTGCC
CCCGTCGGCGTCGTGGCAAGACCTGAAGGACCACATGCGAGGGTCGGGGG
GCGACGTGTGCTACTCCGACGTGGACAGGAAGGGAGGAGGACTGGTGGAG
TTCACGCGGGAGGACGATATGCTGGAGGCTCTGGAGCGTTTGGATCGCAG
CGAATTCCGCAACCGCTTCGACACCTGCGAAATCCGCGTGCGTCTGCCCA
AGGACTCCCCCTTCGGCCGGCGGGGGGACGGGGGGGAGGGCGGAGTCGGA
GCCGGAGTCGCAGCCCCCGAGGCCGTCCTGGTTCCCGCTCTCGCTCCAGG
TCCCCTGCCTCCTCCTCCCCTCGACGACCTCGAGGCCGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGACAGAAGCGAGTCCCGAT
CTCCGTCGCGGTCCCCTCCTCGCAGGCGGGAGCGCTCATCTTCCCCTCCC
GGCCGCTCCCGCTCCCGCTCTGCGTCGAGGTGAATCCATGGAGGCTGGCA
AAAGACGTAAAGTAAGCTTGATTGAGGAGTGAATGGCGCGCGGGGGGGGC
GGGGACGGCGGGAGGGGAGGTGGTTGGGAGGGAGGGAGGGGGGGGTATGG
CGGAGGAGGAGGGTATGATGGAGGGAGAGGCGGAGGGTACGGTGATAGGT
ACGGAGGGGACCGGCCTTACGGCGATCGTGGGATGGGCGGAGGACGAGGG
GGAGGGGGAGGGAAGCGCACGGAATATCAGCTGATCGTCACGGACTTGCC
CCCGTCGGCGTCGTGGCAAGACCTGAAGGACCACATGCGAGGGTCGGGGG
GCGACGTGTGCTACTCCGACGTGGACAGGAAGGGAGGAGGACTGGTGGAG
TTCACGCGGGAGGACGATATGCTGGAGGCTCTGGAGCGTTTGGATCGCAG

Synonyms

Publications