EWM22848.1, cds7830 (CDS) Nannochloropsis gaditana

Overview
NameEWM22848.1
Unique Namecds7830
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:127390..127757 -
Alignment locationCM002474.1:126908..127289 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22848.1
Productsplicing arginine serine-rich 1 9
Orig transcript idgnl|cribi|Naga_100293g3.8354.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:127390..127757 -
CM002474.1supercontigCM002474.1:126908..127289 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|585103487|gb|EWM22848.1| (splicing arginine serine-rich 1 9 [Nannochloropsis gaditana])

HSP 1 Score: 464.537 bits (1194), Expect = 9.579e-165
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0 
Query:    1 MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 249
            MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE
Sbjct:    1 MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 249
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|585103486|gb|EWM22847.1| (splicing arginine serine-rich 1 9 [Nannochloropsis gaditana])

HSP 1 Score: 467.233 bits (1201), Expect = 1.108e-164
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0 
Query:    1 MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 249
            MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE
Sbjct:   76 MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 324
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|1188116718|ref|XP_020780788.1| (serine/arginine-rich splicing factor 9-like isoform X1 [Boleophthalmus pectinirostris] >gi|1188116720|ref|XP_020780789.1| serine/arginine-rich splicing factor 9-like isoform X1 [Boleophthalmus pectinirostris])

HSP 1 Score: 102.834 bits (255), Expect = 1.815e-22
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 0 
Query:   54 GRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRF-DTCEIRV 136
            GRGG   +R+E+++IVT LPP+ SWQDLKDHMR   GDVCY+DV R G G+VEF R DDM  A+ RLDR+EFR+   +T  IRV
Sbjct:  138 GRGGPPSRRSEFRVIVTGLPPTGSWQDLKDHMR-EAGDVCYTDVQRSGEGVVEFVRRDDMEYAVRRLDRTEFRSHLGETSFIRV 220
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|527273470|ref|XP_005155252.1| (PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing factor 1 [Melopsittacus undulatus])

HSP 1 Score: 93.9745 bits (232), Expect = 9.881e-20
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 0 
Query:   60 GKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRF-DTCEIRVRL--PKDSPFGR 146
             +R+EY++IV+ LPPS SWQDLKDHMR   GDVCY+DV R G G+VEF R++DM  A+ +LD ++FR+   +T  IRV++  P+   +GR
Sbjct:   87 SRRSEYRVIVSGLPPSGSWQDLKDHMR-EAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGR 175
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|213515460|ref|NP_001133886.1| (Splicing factor, arginine/serine-rich 9 [Salmo salar] >gi|929059103|ref|XP_013983998.1| PREDICTED: splicing factor, arginine/serine-rich 9 isoform X1 [Salmo salar] >gi|929059105|ref|XP_013984007.1| PREDICTED: splicing factor, arginine/serine-rich 9 isoform X1 [Salmo salar] >gi|929059107|ref|XP_013984017.1| PREDICTED: splicing factor, arginine/serine-rich 9 isoform X1 [Salmo salar] >gi|929059109|ref|XP_013984024.1| PREDICTED: splicing factor, arginine/serine-rich 9 isoform X1 [Salmo salar] >gi|929059111|ref|XP_013984033.1| PREDICTED: splicing factor, arginine/serine-rich 9 isoform X1 [Salmo salar] >gi|929059113|ref|XP_013984042.1| PREDICTED: splicing factor, arginine/serine-rich 9 isoform X1 [Salmo salar] >gi|929059115|ref|XP_013984050.1| PREDICTED: splicing factor, arginine/serine-rich 9 isoform X1 [Salmo salar] >gi|209155694|gb|ACI34079.1| Splicing factor, arginine/serine-rich 9 [Salmo salar] >gi|223649152|gb|ACN11334.1| Splicing factor, arginine/serine-rich 9 [Salmo salar])

HSP 1 Score: 93.5893 bits (231), Expect = 2.127e-19
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 0 
Query:   57 GGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRF-DTCEIRV 136
            G   +R+E+++IVT LPPS SWQDLKDHMR   GDVC++DV R G G+VEF R +DM  AL RLDR+EFR+   +   IRV
Sbjct:  104 GPPTRRSEFRVIVTGLPPSGSWQDLKDHMR-EAGDVCFADVQRDGEGVVEFVRREDMEYALRRLDRTEFRSHQGEMANIRV 183
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|1158929909|ref|XP_020313017.1| (serine/arginine-rich splicing factor 9-like [Oncorhynchus kisutch] >gi|1158929911|ref|XP_020313018.1| serine/arginine-rich splicing factor 9-like [Oncorhynchus kisutch] >gi|1158929913|ref|XP_020313019.1| serine/arginine-rich splicing factor 9-like [Oncorhynchus kisutch] >gi|1158929915|ref|XP_020313020.1| serine/arginine-rich splicing factor 9-like [Oncorhynchus kisutch] >gi|1158929917|ref|XP_020313021.1| serine/arginine-rich splicing factor 9-like [Oncorhynchus kisutch] >gi|1158929919|ref|XP_020313022.1| serine/arginine-rich splicing factor 9-like [Oncorhynchus kisutch])

HSP 1 Score: 93.5893 bits (231), Expect = 2.217e-19
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 0 
Query:   57 GGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRF-DTCEIRV 136
            G   +R+E+++IVT LPPS SWQDLKDHMR   GDVC++DV R G G+VEF R +DM  AL RLDR+EFR+   +   IRV
Sbjct:  104 GPPTRRSEFRVIVTGLPPSGSWQDLKDHMR-EAGDVCFADVQRDGEGVVEFVRREDMEYALRRLDRTEFRSHQGEMANIRV 183
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|768366207|ref|XP_011580392.1| (PREDICTED: serine/arginine-rich splicing factor 1 [Aquila chrysaetos canadensis])

HSP 1 Score: 92.4337 bits (228), Expect = 3.314e-19
Identity = 44/80 (55.00%), Postives = 61/80 (76.25%), Query Frame = 0 
Query:   60 GKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRF-DTCEIRVRL 138
             +R+EY++IV+ LPPS SWQDLKDHMR   GDVCY+DV R G G+VEF R++DM  A+ +LD ++FR+   +T  IRV++
Sbjct:   90 SRRSEYRVIVSGLPPSGSWQDLKDHMR-EAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 168
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|1169043442|ref|XP_020474262.1| (serine/arginine-rich splicing factor 9-like [Monopterus albus] >gi|1169043444|ref|XP_020474263.1| serine/arginine-rich splicing factor 9-like [Monopterus albus] >gi|1169043446|ref|XP_020474264.1| serine/arginine-rich splicing factor 9-like [Monopterus albus] >gi|1169043448|ref|XP_020474265.1| serine/arginine-rich splicing factor 9-like [Monopterus albus] >gi|1169043450|ref|XP_020474266.1| serine/arginine-rich splicing factor 9-like [Monopterus albus])

HSP 1 Score: 93.2041 bits (230), Expect = 4.125e-19
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 0 
Query:   61 KRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRF-DTCEIRV 136
            +R+E+++IVT LPPS SWQDLKDHMR   GDVC++DV R G G+VEF R +DM  AL RLDR+EFR+   +T  IRV
Sbjct:  115 RRSEFRVIVTGLPPSGSWQDLKDHMR-EAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDRTEFRSHQGETAYIRV 190
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|1024969426|ref|XP_016306060.1| (PREDICTED: serine/arginine-rich splicing factor 1A isoform X1 [Sinocyclocheilus anshuiensis])

HSP 1 Score: 92.4337 bits (228), Expect = 6.269e-19
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 0 
Query:   60 GKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRF-DTCEIRVRL 138
             +R+EY++IV+ LPPS SWQDLKDHMR   GDVCY+DV R G G+VEF R++DM  A+ +LD ++FR+   +T  IRVR+
Sbjct:  123 SRRSEYRVIVSGLPPSGSWQDLKDHMR-EAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVRV 201
[Close]
BLAST of EWM22848.1 vs. NCBI_GenBank
Match: gi|299469752|emb|CBN76606.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.5893 bits (231), Expect = 8.070e-19
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 0 
Query:   61 KRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRV 136
            ++TEY++IVT LPPSASWQDLKDHMR   G+  Y+DVD KGGG+V F   DDM  AL +LD S+FRN F+   I V
Sbjct:  113 QQTEYRVIVTGLPPSASWQDLKDHMR-KAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
The following BLAST results are available for this feature:
BLAST of EWM22848.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103487|gb|EWM22848.1|9.579e-165100.00splicing arginine serine-rich 1 9 [Nannochloropsis... [more]
gi|585103486|gb|EWM22847.1|1.108e-164100.00splicing arginine serine-rich 1 9 [Nannochloropsis... [more]
gi|1188116718|ref|XP_020780788.1|1.815e-2260.71serine/arginine-rich splicing factor 9-like isofor... [more]
gi|527273470|ref|XP_005155252.1|9.881e-2052.22PREDICTED: LOW QUALITY PROTEIN: serine/arginine-ri... [more]
gi|213515460|ref|NP_001133886.1|2.127e-1958.02Splicing factor, arginine/serine-rich 9 [Salmo sal... [more]
gi|1158929909|ref|XP_020313017.1|2.217e-1958.02serine/arginine-rich splicing factor 9-like [Oncor... [more]
gi|768366207|ref|XP_011580392.1|3.314e-1955.00PREDICTED: serine/arginine-rich splicing factor 1 ... [more]
gi|1169043442|ref|XP_020474262.1|4.125e-1961.04serine/arginine-rich splicing factor 9-like [Monop... [more]
gi|1024969426|ref|XP_016306060.1|6.269e-1956.25PREDICTED: serine/arginine-rich splicing factor 1A... [more]
gi|299469752|emb|CBN76606.1|8.070e-1960.53conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7852rna7852Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications