rna7851, rna7851 (mRNA) Nannochloropsis gaditana

Overview
Namerna7851
Unique Namerna7851
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002474.1:126608..128606 -

Link to JBrowse

Properties
Property NameValue
Productsplicing arginine serine-rich 1 9
Orig transcript idgnl|cribi|Naga_100293g3.8353.mrna
Orig protein idgnl|cribi|Naga_100293g3.8353
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:126608..128606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100293g3gene7605Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7851rna7851-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22847.1cds7829Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7851 ID=rna7851|Name=rna7851|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGTTTCCGCAAGATGCAGCCCAGGCTATTGCTACGGCATTCTGGCATAC
TTCCATTCGCAACGCTGCATTCATTCCCCTGCATCTTCCCCAAACGCCTC
CCTGTCCTACCCTCTTCCACAGCGTGGGCGTCGGGCGCGAGGGCCGGCCT
GTGCGAAGGAACAAGAACGTCTTTTTGGAATGGCTCAGAGATGTCTACCA
GCGCATCTTTTGGTTCGGTTTGGAAGGGCTTGACGACGACGATGATGACT
ACTACTTGGACGAGATAGACTGGCTGGGTATCGATACAGGGAGGTTGAGC
AAGGCTCGAGCACGCCTCCAAATGGTGGACCGGGAGCTGGAGCAGATCGA
CCGGGAGAGGCGAGCACTCAATGGTTTGCAAGCGAGGGAGAGAGGGAGGA
TGGAAGAGGGGTGGGGGGACGAGGAGGACGAGGAGGAGGTCGTGGCCGAG
GGAGGGAGGGAGGAACGGGGGCAGTCGAAAGCACTGTAG
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protein sequence of rna7851

>rna7851-protein ID=rna7851-protein|Name=rna7851|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MAARVYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDD
RRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGG
GGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPS
ASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEF
RNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPL
PPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAA
PAPALRRGESMEAGKRRKVSLIEE
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mRNA from alignment at CM002474.1:126608..128606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7851 ID=rna7851|Name=rna7851|organism=Nannochloropsis gaditana|type=mRNA|length=1999bp|location=Sequence derived from alignment at CM002474.1:126608..128606- (Nannochloropsis gaditana)
AGGCCTGAAATTGTGCTGCAGTTTCAAACATAGCAGGGCTGGGGTCTTGA
ATCGATAAGTCTTCGCAGTGGTCATGTATGGGTGCGTACGGCCCCCTGGG
CCGCATTTATTATGTTTGCCGAACCCCCCCAAGTGCTCAACCCGAAGGAG
GAGAAATCCTTCTCCAGTGGAGAAACCCTCTGTCTGCTGCAAATGTGACG
CCCACTCGATCATCTCTGTCTTTTAGCCTCCAGAATGCCTCAAATACGGT
GATACTTGTAAAATTGTAGGTTCGAAGTCATGTAGGCCGCTTAAGTGTCA
TCATACTTCTGGTCTATCCCCTCCCCTTTCTCCTCAGCCATAGATACAGG
GTTCGCGGGACGAGATCAAAGTAATTGAGTTCACTGCACCCAAGCAATCA
TGGCCGCACGCGTATATGTGGGCAACTTGCCCATGGACATCCGAGAGCGC
GACGTGGAAGACCTTTTTACCAGATATGGCAACGTGACGAACGTGGACCT
GAAGACTCCCGCGCGGTGAGGAGGGAGGAGGGAAGAAATGGCAAGGAGAA
GAAGAAGAGGAAAGGGTGTGCGGGGACTGTCAGCGATCAACAGCGTGGAA
GGCATGGATAGGAAAAGCGTCAGGATAGAGTATGCCGTGTGGACTGCCCG
ATGAAGTGGAAGCCTGCGCCTTCAAATTCTATATCACGATGCGCGCCTCA
TAGCCCGCCACATCCTCTACGCCTCTGCCTTCTTCCGCAGGCCCCCCGCC
TACGCCTTTGTCACTTTTGACGATCGCCGTGACGCTGAGGATGCTGTGAG
GGCACGAGACAACTACCAGCTCCAGGAAGGGAACAGGCTCCGCGTGGAGA
TGGCGCGCGGGGGGGGCGGGGACGGCGGGAGGGGAGGTGGTTGGGAGGGA
GGGAGGGGGGGGTATGGCGGAGGAGGAGGGTATGATGGAGGGAGAGGCGG
AGGGTACGGTGATAGGTACGGAGGGGACCGGCCTTACGGCGATCGTGGGA
TGGGCGGAGGACGAGGGGGAGGGGGAGGGAAGCGCACGGAATATCAGCTG
ATCGTCACGGACTTGCCCCCGTCGGCGTCGTGGCAAGACCTGAAGGACCA
CATGCGAGGGTCGGGGGGCGACGTGTGCTACTCCGACGTGGACAGGAAGG
GAGGAGGACTGGTGGAGTTCACGCGGGAGGACGATATGCTGGAGGCTCTG
GAGCGTTTGGATCGCAGGTGAGGGGAGAGGTCGGGGGAACGCTTGGCAAG
GGGGGTAGTCTGCAGATCCCGACCATCTCATGCCATTTCCCCTTTCTGCC
CCTCCCCCCCTCTCCAGCGAATTCCGCAACCGCTTCGACACCTGCGAAAT
CCGCGTGCGTCTGCCCAAGGACTCCCCCTTCGGCCGGCGGGGGGACGGGG
GGGAGGGCGGAGTCGGAGCCGGAGTCGCAGCCCCCGAGGCCGTCCTGGTT
CCCGCTCTCGCTCCAGGTCCCCTGCCTCCTCCTCCCCTCGACGACCTCGA
GGCCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGA
CAGAAGCGAGTCCCGATCTCCGTCGCGGTCCCCTCCTCGCAGGCGGGAGC
GCTCATCTTCCCCTCCCGGCCGCTCCCGCTCCCGCTCTGCGTCGAGGTGA
ATCCATGGAGGCTGGCAAAAGACGTAAAGTAAGCTTGATTGAGGAGTGAC
TGATGGGGCCCGCACTGGGAGAGGAGCGAGGCGGGCGCGACGGCGGGGGT
GAGCATTGAAGAGGGGGGCGTTGAGTTTGAGAGTAGGGTATAAGGAGAGA
GGGCGAGAGCAAAGCGGGCGAGCCAGGCGAGAAATCCAGTCACAGGAGCA
AAGAAATCAGGCTAGATGGCCCCTTACCATCCATGTGGTCGGCGCAGGAA
CGTCTCCTCGCCTGGCCTTCCACGTCTTCCTACGGAAATGGGAGCTTTTG
GGGGTTTCCTCTCGTAGTATTTATGTTTGGTACGTCCCCGCAGTTTCTT
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Coding sequence (CDS) from alignment at CM002474.1:126608..128606-

>rna7851 ID=rna7851|Name=rna7851|organism=Nannochloropsis gaditana|type=CDS|length=2925bp|location=Sequence derived from alignment at CM002474.1:126608..128606- (Nannochloropsis gaditana)
CGAATTCCGCAACCGCTTCGACACCTGCGAAATCCGCGTGCGTCTGCCCA
AGGACTCCCCCTTCGGCCGGCGGGGGGACGGGGGGGAGGGCGGAGTCGGA
GCCGGAGTCGCAGCCCCCGAGGCCGTCCTGGTTCCCGCTCTCGCTCCAGG
TCCCCTGCCTCCTCCTCCCCTCGACGACCTCGAGGCCGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGACAGAAGCGAGTCCCGAT
CTCCGTCGCGGTCCCCTCCTCGCAGGCGGGAGCGCTCATCTTCCCCTCCC
GGCCGCTCCCGCTCCCGCTCTGCGTCGAGGTGAATCCATGGAGGCTGGCA
AAAGACGTAAAGTAAGCTTGATTGAGGAGTGAGCCCCCCGCCTACGCCTT
TGTCACTTTTGACGATCGCCGTGACGCTGAGGATGCTGTGAGGGCACGAG
ACAACTACCAGCTCCAGGAAGGGAACAGGCTCCGCGTGGAGATGGCGCGC
GGGGGGGGCGGGGACGGCGGGAGGGGAGGTGGTTGGGAGGGAGGGAGGGG
GGGGTATGGCGGAGGAGGAGGGTATGATGGAGGGAGAGGCGGAGGGTACG
GTGATAGGTACGGAGGGGACCGGCCTTACGGCGATCGTGGGATGGGCGGA
GGACGAGGGGGAGGGGGAGGGAAGCGCACGGAATATCAGCTGATCGTCAC
GGACTTGCCCCCGTCGGCGTCGTGGCAAGACCTGAAGGACCACATGCGAG
GGTCGGGGGGCGACGTGTGCTACTCCGACGTGGACAGGAAGGGAGGAGGA
CTGGTGGAGTTCACGCGGGAGGACGATATGCTGGAGGCTCTGGAGCGTTT
GGATCGCAGATGGCCGCACGCGTATATGTGGGCAACTTGCCCATGGACAT
CCGAGAGCGCGACGTGGAAGACCTTTTTACCAGATATGGCAACGTGACGA
ACGTGGACCTGAAGACTCCCGCGCGCGAATTCCGCAACCGCTTCGACACC
TGCGAAATCCGCGTGCGTCTGCCCAAGGACTCCCCCTTCGGCCGGCGGGG
GGACGGGGGGGAGGGCGGAGTCGGAGCCGGAGTCGCAGCCCCCGAGGCCG
TCCTGGTTCCCGCTCTCGCTCCAGGTCCCCTGCCTCCTCCTCCCCTCGAC
GACCTCGAGGCCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAAGGACAGAAGCGAGTCCCGATCTCCGTCGCGGTCCCCTCCTCGCAG
GCGGGAGCGCTCATCTTCCCCTCCCGGCCGCTCCCGCTCCCGCTCTGCGT
CGAGGTGAATCCATGGAGGCTGGCAAAAGACGTAAAGTAAGCTTGATTGA
GGAGTGAGCCCCCCGCCTACGCCTTTGTCACTTTTGACGATCGCCGTGAC
GCTGAGGATGCTGTGAGGGCACGAGACAACTACCAGCTCCAGGAAGGGAA
CAGGCTCCGCGTGGAGATGGCGCGCGGGGGGGGCGGGGACGGCGGGAGGG
GAGGTGGTTGGGAGGGAGGGAGGGGGGGGTATGGCGGAGGAGGAGGGTAT
GATGGAGGGAGAGGCGGAGGGTACGGTGATAGGTACGGAGGGGACCGGCC
TTACGGCGATCGTGGGATGGGCGGAGGACGAGGGGGAGGGGGAGGGAAGC
GCACGGAATATCAGCTGATCGTCACGGACTTGCCCCCGTCGGCGTCGTGG
CAAGACCTGAAGGACCACATGCGAGGGTCGGGGGGCGACGTGTGCTACTC
CGACGTGGACAGGAAGGGAGGAGGACTGGTGGAGTTCACGCGGGAGGACG
ATATGCTGGAGGCTCTGGAGCGTTTGGATCGCAGATGGCCGCACGCGTAT
ATGTGGGCAACTTGCCCATGGACATCCGAGAGCGCGACGTGGAAGACCTT
TTTACCAGATATGGCAACGTGACGAACGTGGACCTGAAGACTCCCGCGCG
CGAATTCCGCAACCGCTTCGACACCTGCGAAATCCGCGTGCGTCTGCCCA
AGGACTCCCCCTTCGGCCGGCGGGGGGACGGGGGGGAGGGCGGAGTCGGA
GCCGGAGTCGCAGCCCCCGAGGCCGTCCTGGTTCCCGCTCTCGCTCCAGG
TCCCCTGCCTCCTCCTCCCCTCGACGACCTCGAGGCCGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGACAGAAGCGAGTCCCGAT
CTCCGTCGCGGTCCCCTCCTCGCAGGCGGGAGCGCTCATCTTCCCCTCCC
GGCCGCTCCCGCTCCCGCTCTGCGTCGAGGTGAATCCATGGAGGCTGGCA
AAAGACGTAAAGTAAGCTTGATTGAGGAGTGAGCCCCCCGCCTACGCCTT
TGTCACTTTTGACGATCGCCGTGACGCTGAGGATGCTGTGAGGGCACGAG
ACAACTACCAGCTCCAGGAAGGGAACAGGCTCCGCGTGGAGATGGCGCGC
GGGGGGGGCGGGGACGGCGGGAGGGGAGGTGGTTGGGAGGGAGGGAGGGG
GGGGTATGGCGGAGGAGGAGGGTATGATGGAGGGAGAGGCGGAGGGTACG
GTGATAGGTACGGAGGGGACCGGCCTTACGGCGATCGTGGGATGGGCGGA
GGACGAGGGGGAGGGGGAGGGAAGCGCACGGAATATCAGCTGATCGTCAC
GGACTTGCCCCCGTCGGCGTCGTGGCAAGACCTGAAGGACCACATGCGAG
GGTCGGGGGGCGACGTGTGCTACTCCGACGTGGACAGGAAGGGAGGAGGA
CTGGTGGAGTTCACGCGGGAGGACGATATGCTGGAGGCTCTGGAGCGTTT
GGATCGCAGATGGCCGCACGCGTATATGTGGGCAACTTGCCCATGGACAT
CCGAGAGCGCGACGTGGAAGACCTTTTTACCAGATATGGCAACGTGACGA
ACGTGGACCTGAAGACTCCCGCGCG
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Synonyms
Publications