EWM22847.1, cds7829 (CDS) Nannochloropsis gaditana

Overview
NameEWM22847.1
Unique Namecds7829
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:128092..128207 -
Alignment locationCM002474.1:127390..127866 -
Alignment locationCM002474.1:126908..127289 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22847.1
Productsplicing arginine serine-rich 1 9
Orig transcript idgnl|cribi|Naga_100293g3.8353.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:128092..128207 -
CM002474.1supercontigCM002474.1:127390..127866 -
CM002474.1supercontigCM002474.1:126908..127289 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|585103486|gb|EWM22847.1| (splicing arginine serine-rich 1 9 [Nannochloropsis gaditana])

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0 
Query:    1 MAARVYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 324
            MAARVYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE
Sbjct:    1 MAARVYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 324
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|585103487|gb|EWM22848.1| (splicing arginine serine-rich 1 9 [Nannochloropsis gaditana])

HSP 1 Score: 467.233 bits (1201), Expect = 1.442e-164
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0 
Query:   76 MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 324
            MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE
Sbjct:    1 MARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGGGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDSPFGRRGDGGEGGVGAGVAAPEAVLVPALAPGPLPPPPLDDLEAEGGREGGREGGREGRTEASPDLRRGPLLAGGSAHLPLPAAPAPALRRGESMEAGKRRKVSLIEE 249
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|567156215|ref|XP_006418298.1| (hypothetical protein EUTSA_v10008507mg [Eutrema salsugineum] >gi|557096069|gb|ESQ36651.1| hypothetical protein EUTSA_v10008507mg [Eutrema salsugineum])

HSP 1 Score: 169.474 bits (428), Expect = 2.661e-47
Identity = 108/211 (51.18%), Postives = 132/211 (62.56%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKG---GGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVR 212
            VYVGNLP DIRER+VEDLF++YG V  +DLK P RPP YAFV FDD RDAEDA+  RD Y   +G+RLRVE+A GG          +  R GY GGG   G  GGG      G  P               +R+E++++VT LP SASWQDLKDHMR  GGDVC+S V R G    G+V++T  +DM  A+++LD +EFRN F    IRVR
Sbjct:    9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDF-DGHRLRVELAHGG------RRSTDDARSGYNGGGRGGGRGGGGGDGGSRGRGP--------------SRRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDGRGTTGVVDYTCYEDMKYAVKKLDDTEFRNAFSHGHIRVR 197
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|727569488|ref|XP_010457275.1| (PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X1 [Camelina sativa])

HSP 1 Score: 168.703 bits (426), Expect = 2.231e-46
Identity = 103/211 (48.82%), Postives = 129/211 (61.14%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKG---GGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVR 212
            VYVGNLP DIRER+VEDLF++YG V  +DLK P RPP YAFV FDD RDAEDA+  RD Y   +G+RLRVE+A GG          +  RG +  GG   G   G      G   P               +R+E++++VT LP SASWQDLKDHMR  GGDVC+S V R G    G+V++T  +DM  A+++LD +EFRN F    +RVR
Sbjct:    9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDF-DGHRLRVELAHGG------RRSTDDSRGSFNDGGRGGGRGRGDGRGDGGSRGP--------------SRRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDGRGTTGVVDYTCYEDMKYAVKKLDDTEFRNAFSHGYVRVR 197
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|727569490|ref|XP_010457276.1| (PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X2 [Camelina sativa])

HSP 1 Score: 168.318 bits (425), Expect = 2.297e-46
Identity = 103/211 (48.82%), Postives = 129/211 (61.14%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKG---GGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVR 212
            VYVGNLP DIRER+VEDLF++YG V  +DLK P RPP YAFV FDD RDAEDA+  RD Y   +G+RLRVE+A GG          +  RG +  GG   G   G      G   P               +R+E++++VT LP SASWQDLKDHMR  GGDVC+S V R G    G+V++T  +DM  A+++LD +EFRN F    +RVR
Sbjct:    9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDF-DGHRLRVELAHGG------RRSTDDSRGSFNDGGRGGGRGRGDGRGDGGSRGP--------------SRRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDGRGTTGVVDYTCYEDMKYAVKKLDDTEFRNAFSHGYVRVR 197
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|1040887761|ref|XP_017252797.1| (PREDICTED: serine/arginine-rich-splicing factor SR34-like [Daucus carota subsp. sativus])

HSP 1 Score: 166.777 bits (421), Expect = 1.860e-45
Identity = 103/212 (48.58%), Postives = 134/212 (63.21%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGG---GLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRL 213
            +YVGNLP DIRER+VEDLF +YG + ++DLK P RPP +AFV F++ RDAEDA+R RD Y   +G+RLRVE+A      GGRG      R                Y +   G    G  G GGG  GG  +R++Y+++V+ LP SASWQDLKDHMR   GDVC+S V R+GG   G+V++T  DDM  A+ +LD SEF+N F    IRV++
Sbjct:    8 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGFAFVEFEEARDAEDAIRGRDGYDF-DGHRLRVELAH-----GGRGNSSATDR----------------YSNHGRGRGGGGGGGGGGGGRGGVSRRSDYRVMVSGLPSSASWQDLKDHMR-RAGDVCFSQVFREGGGTTGIVDYTNYDDMKYAIRKLDESEFKNAFSRGVIRVKV 196
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|1021037315|gb|KZM95098.1| (hypothetical protein DCAR_018340 [Daucus carota subsp. sativus])

HSP 1 Score: 164.466 bits (415), Expect = 4.984e-45
Identity = 104/216 (48.15%), Postives = 135/216 (62.50%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKGG---GLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVRLPKDS 217
            +YVGNLP DIRER+VEDLF +YG + ++DLK P RPP +AFV F++ RDAEDA+R RD Y   +G+RLRVE+A      GGRG      R                Y +   G    G  G GGG  GG  +R++Y+++V+ LP SASWQDLKDHMR   GDVC+S V R+GG   G+V++T  DDM  A+ +LD SEF+N F    IRV++   S
Sbjct:    8 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGFAFVEFEEARDAEDAIRGRDGYDF-DGHRLRVELAH-----GGRGNSSATDR----------------YSNHGRGRGGGGGGGGGGGGRGGVSRRSDYRVMVSGLPSSASWQDLKDHMR-RAGDVCFSQVFREGGGTTGIVDYTNYDDMKYAIRKLDESEFKNAFSRGVIRVKVYDSS 200
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|30678391|ref|NP_850933.1| (RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] >gi|3929368|sp|O22315.1|SR34_ARATH RecName: Full=Serine/arginine-rich-splicing factor SR34; Short=At-SR34; Short=At-SRp34; Short=AtSR34; AltName: Full=Pre-mRNA-splicing factor SF2; AltName: Full=SR1 protein >gi|6056417|gb|AAF02881.1|AC009525_15 alternative splicing factor SF2a [Arabidopsis thaliana] >gi|2443472|gb|AAB71385.1| ASF/SF2 homolog [Arabidopsis thaliana] >gi|21554051|gb|AAM63132.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis thaliana] >gi|26451794|dbj|BAC42991.1| putative ribonucleoprotein SF-2 [Arabidopsis thaliana] >gi|332189356|gb|AEE27477.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana])

HSP 1 Score: 162.925 bits (411), Expect = 2.604e-44
Identity = 104/211 (49.29%), Postives = 127/211 (60.19%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKG---GGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVR 212
            VYVGNLP DIRER+VEDLF++YG V  +DLK P RPP YAFV FDD RDAEDA+  RD Y   +G+RLRVE+A GG        G   G G  GG G                         G G   G  +R+E++++VT LP SASWQDLKDHMR  GGDVC+S V R      G+V++T  +DM  AL++LD +EFRN F    +RVR
Sbjct:    9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDF-DGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGR------------------------GDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVR 193
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|727603640|ref|XP_010474862.1| (PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X1 [Camelina sativa] >gi|727603642|ref|XP_010474863.1| PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X1 [Camelina sativa])

HSP 1 Score: 162.54 bits (410), Expect = 2.977e-44
Identity = 105/211 (49.76%), Postives = 129/211 (61.14%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKG---GGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVR 212
            VYVGNLP DIRER+VEDLF++YG V  +DLK P RPP YAFV FDD RDAEDA+  RD Y   +G+RLRVE+A GG        G   G G  GG G                       G G G   G  +R+E++++VT LP SASWQDLKDHMR  GGDVC+S V R G    G+V++T  +DM  A+++LD +EFRN F    +RVR
Sbjct:    9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDF-DGHRLRVELAHGGRRSTDDSRGSFNGGGRGGGRG--------------------RGDGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDGRGTTGVVDYTCYEDMKYAVKKLDDTEFRNAFSHGYVRVR 197
[Close]
BLAST of EWM22847.1 vs. NCBI_GenBank
Match: gi|565494130|ref|XP_006304704.1| (hypothetical protein CARUB_v10011968mg [Capsella rubella] >gi|482573415|gb|EOA37602.1| hypothetical protein CARUB_v10011968mg [Capsella rubella])

HSP 1 Score: 162.925 bits (411), Expect = 3.332e-44
Identity = 105/211 (49.76%), Postives = 129/211 (61.14%), Query Frame = 0 
Query:    5 VYVGNLPMDIRERDVEDLFTRYGNVTNVDLKTPARPPAYAFVTFDDRRDAEDAVRARDNYQLQEGNRLRVEMARGGGGDGGRGGGWEGGRGGYGGGGGYDGGRGGGYGDRYGGDRPYGDRGMGGGRGGGGGKRTEYQLIVTDLPPSASWQDLKDHMRGSGGDVCYSDVDRKG---GGLVEFTREDDMLEALERLDRSEFRNRFDTCEIRVR 212
            VYVGNLP DIRER+VEDLF++YG V  +DLK P RPP YAFV FDD RDAEDA+  RD Y   +G+RLRVE+A GG        G   G G  GG G                       G G G   G  +R+E++++VT LP SASWQDLKDHMR  GGDVC+S V R G    G+V++T  +DM  A+++LD +EFRN F    +RVR
Sbjct:    9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDF-DGHRLRVELAHGGRRSSDDSRGGFNGGGRGGGRG--------------------RGDGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMR-KGGDVCFSQVYRDGRGTTGVVDYTCYEDMKYAVKKLDDTEFRNAFSHGYVRVR 197
The following BLAST results are available for this feature:
BLAST of EWM22847.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103486|gb|EWM22847.1|0.000e+0100.00splicing arginine serine-rich 1 9 [Nannochloropsis... [more]
gi|585103487|gb|EWM22848.1|1.442e-164100.00splicing arginine serine-rich 1 9 [Nannochloropsis... [more]
gi|567156215|ref|XP_006418298.1|2.661e-4751.18hypothetical protein EUTSA_v10008507mg [Eutrema sa... [more]
gi|727569488|ref|XP_010457275.1|2.231e-4648.82PREDICTED: serine/arginine-rich-splicing factor SR... [more]
gi|727569490|ref|XP_010457276.1|2.297e-4648.82PREDICTED: serine/arginine-rich-splicing factor SR... [more]
gi|1040887761|ref|XP_017252797.1|1.860e-4548.58PREDICTED: serine/arginine-rich-splicing factor SR... [more]
gi|1021037315|gb|KZM95098.1|4.984e-4548.15hypothetical protein DCAR_018340 [Daucus carota su... [more]
gi|30678391|ref|NP_850933.1|2.604e-4449.29RNA-binding (RRM/RBD/RNP motifs) family protein [A... [more]
gi|727603640|ref|XP_010474862.1|2.977e-4449.76PREDICTED: serine/arginine-rich-splicing factor SR... [more]
gi|565494130|ref|XP_006304704.1|3.332e-4449.76hypothetical protein CARUB_v10011968mg [Capsella r... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7851rna7851Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications