rna7850, rna7850 (mRNA) Nannochloropsis gaditana

Overview
Namerna7850
Unique Namerna7850
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length495
Alignment locationCM002474.1:125292..126603 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100293g4.8349.mrna
Orig protein idgnl|cribi|Naga_100293g4.8349
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:125292..126603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100293g4gene7604Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7850rna7850-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22843.1cds7828Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7850 ID=rna7850|Name=rna7850|organism=Nannochloropsis gaditana|type=mRNA|length=495bp
ATGGCCTCGCCGTTTTCCTCAACTGGGGGTAAGCTGGGGCTGGCTTCGAA
GGTACAGACACAGGGTAGTTGTCACGACGCGGAAAATTCAGATGGTTGCT
GCCTTGCTGGCGTCGACGACAGACTCGAGGCTTTGGCACACTCAGTTTCA
CAAGACGTTATTCCCGGTTTAGAGCGTGAGCTGAATAAGGTGCGAGGTTG
GTTGGCAATGCTGGACGCTCGTCAACCTGTGGGGTGTATTTCCGCGCGCG
CTAATCCGTCGGGCTTGTCAAAGACACAATCGTTATCTGAGCGCAGCGGA
GAAAGCGAGGCGGTTCCGATTTCTCAGTCGGAATTGAATTTGAAGGTGCA
TCATAAACTTGAGACATTGAATACCGCGGTGCGGGTGTTCAAGGTAAGAA
ATCCGAACGGCACTGGGTACCAATTACAAGGCGCCGATGAAGACGACAAC
TTATTGACGTGCGATATGCAGAGAGAAATATGGATAATCGCTTGA
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protein sequence of rna7850

>rna7850-protein ID=rna7850-protein|Name=rna7850|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MFPQDAAQAIATAFWHTSIRNAAFIPLHLPQTPPCPTLFHSVGVGREGRP
VRRNKNVFLEWLRDVYQRIFWFGLEGLDDDDDDYYLDEIDWLGIDTGRLS
KARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEEVVAE
GGREERGQSKAL
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mRNA from alignment at CM002474.1:125292..126603+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7850 ID=rna7850|Name=rna7850|organism=Nannochloropsis gaditana|type=mRNA|length=1312bp|location=Sequence derived from alignment at CM002474.1:125292..126603+ (Nannochloropsis gaditana)
atgTTTCCGCAAGATGCAGCCCAGGCTATTGCTACGGCATTCTGGCATAC
TTCCATTCGCAACGCTGCATTCATTCCCCTGCATCTTCCCCAAACGCCTC
CCTGTCCTACCCTCTTCCACAGCGTGGGCGTCGGGCGCGAGGGCCGGCCT
GTGCGAAGGAACAAGAACGTCTTTTTGGAATGGCTCAGAGATGTCTACCA
GCGCATCTTTTGGTTCGGTTTGGAAGGGCttgacgacgacgatgatgacT
ACTACTTGGACGAGATAGACTGGCTGGGTgcgtgcttccctccttcctct
ttcccttcctcccctccttcccttcttcccttcccctttctcctctcctt
cccttcccccttccctcccacagcCTTTCAGCGTTTTTCttaccctcctc
tctctctttctcgctcCCTTCGGGCCCGGGAACAACCTTCAGGTGAATGG
AACCGCCCCCAGGACGTGGGCCAAGGGTGGCGGgcggctgcggaggagga
catcgagagagcgaggacggagggggggggaggggtatTCCGAggggcct
tccccttcgaccGACAGACTTACCCGCAGCAATTCGAcgcggagaggaga
gggaaacgagagggaggggggaagggagaaagagatgggcGCGAAGCCAT
TTTGCGCAAGActggtgagagggaggagcctgCCGTCTGGTCGAacgtgg
gaagagggaaaaaggggaggacgggaggtgggattggagggaggaaggga
aaagtggaggaggaaagggaaaaggagagttTTGCGTCGGACATGGcgcg
cttggaggagagagaggagtcTTTGATGGTCTCCAGGGAGGTCTGGAGAA
GGCGGATTGCGGACGTGCTGCGagcgggggaaggtgggttgggagagggg
aggaggcaccgAGCGAAGataaggaagggggggggcggggcctgtCTAAG
GGTGTCGTTCTTCGCGTGATGGAACAAGACAGCCGGCTCCACGGCGACAA
CCAATCCCATGGACCTCACGTCTggctcccctctcctcttctcctctgct
ccctccctctctctctttctctctgtGTCAACCCCCATCGGCCCCCACAG
GTATCGATACAGGGAGGTTGAGCAAGGCTCGAGCACGCCTCCAAATGGTG
GACCGGGAGCTGGAGCAGATCGACCGGGAGAGGCGAGCACTCAATGGTTT
gcaagcgagggagagagggaggatggaagaggggtggggggacgaggagg
acgaggaggaggtcgtggccgagggagggagggaggaacgggggcAGTCG
AAAGCACTGTAG
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Coding sequence (CDS) from alignment at CM002474.1:125292..126603+

>rna7850 ID=rna7850|Name=rna7850|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002474.1:125292..126603+ (Nannochloropsis gaditana)
atgTTTCCGCAAGATGCAGCCCAGGCTATTGCTACGGCATTCTGGCATAC
TTCCATTCGCAACGCTGCATTCATTCCCCTGCATCTTCCCCAAACGCCTC
CCTGTCCTACCCTCTTCCACAGCGTGGGCGTCGGGCGCGAGGGCCGGCCT
GTGCGAAGGAACAAGAACGTCTTTTTGGAATGGCTCAGAGATGTCTACCA
GCGCATCTTTTGGTTCGGTTTGGAAGGGCttgacgacgacgatgatgacT
ACTACTTGGACGAGATAGACTGGCTGGGTATCGATACAGGGAGGTTGAGC
AAGGCTCGAGCACGCCTCCAAATGGTGGACCGGGAGCTGGAGCAGATCGA
CCGGGAGAGGCGAGCACTCAATGGTTTgcaagcgagggagagagggagga
tggaagaggggtggggggacgaggaggacgaggaggaggtcgtggccgag
ggagggagggaggaacgggggcAGTCGAAAGCACTGTAGatgTTTCCGCA
AGATGCAGCCCAGGCTATTGCTACGGCATTCTGGCATACTTCCATTCGCA
ACGCTGCATTCATTCCCCTGCATCTTCCCCAAACGCCTCCCTGTCCTACC
CTCTTCCACAGCGTGGGCGTCGGGCGCGAGGGCCGGCCTGTGCGAAGGAA
CAAGAACGTCTTTTTGGAATGGCTCAGAGATGTCTACCAGCGCATCTTTT
GGTTCGGTTTGGAAGGGCttgacgacgacgatgatgacTACTACTTGGAC
GAGATAGACTGGCTGGGTATCGATACAGGGAGGTTGAGCAAGGCTCGAGC
ACGCCTCCAAATGGTGGACCGGGAGCTGGAGCAGATCGACCGGGAGAGGC
GAGCACTCAATGGTTTgcaagcgagggagagagggaggatggaagagggg
tggggggacgaggaggacgaggaggaggtcgtggccgagggagggaggga
ggaacgggggcAGTCGAAAGCACTGTAG
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Synonyms
Publications