EWM22843.1, cds7828 (CDS) Nannochloropsis gaditana

Overview
NameEWM22843.1
Unique Namecds7828
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:125292..125568 +
Alignment locationCM002474.1:126392..126603 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22843.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100293g4.8349.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:125292..125568 +
CM002474.1supercontigCM002474.1:126392..126603 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22843.1 vs. NCBI_GenBank
Match: gi|585103482|gb|EWM22843.1| (hypothetical protein Naga_100293g4 [Nannochloropsis gaditana])

HSP 1 Score: 329.331 bits (843), Expect = 2.975e-114
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 
Query:    1 MFPQDAAQAIATAFWHTSIRNAAFIPLHLPQTPPCPTLFHSVGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDDDDDYYLDEIDWLGIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEEVVAEGGREERGQSKAL 162
            MFPQDAAQAIATAFWHTSIRNAAFIPLHLPQTPPCPTLFHSVGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDDDDDYYLDEIDWLGIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEEVVAEGGREERGQSKAL
Sbjct:    1 MFPQDAAQAIATAFWHTSIRNAAFIPLHLPQTPPCPTLFHSVGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDDDDDYYLDEIDWLGIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEEVVAEGGREERGQSKAL 162
[Close]
BLAST of EWM22843.1 vs. NCBI_GenBank
Match: gi|553186721|ref|XP_005854477.1| (hypothetical protein NGA_0194900 [Nannochloropsis gaditana CCMP526] >gi|422294585|gb|EKU21885.1| hypothetical protein NGA_0194900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 130.954 bits (328), Expect = 1.244e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:   93 GIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEEVVAEGGREERGQSKAL 162
            GIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEEVVAEGGREERGQSKAL
Sbjct:  297 GIDTGRLSKARARLQMVDRELEQIDRERRALNGLQARERGRMEEGWGDEEDEEEVVAEGGREERGQSKAL 366

HSP 2 Score: 86.6557 bits (213), Expect = 4.314e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0 
Query:   42 VGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDDDDDYYLDEIDWLG 93
            VGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDDDDDYYLDEIDWLG
Sbjct:   99 VGVGREGRPVRRNKNVFLEWLRDVYQRIFWFGLEGLDDDDDDYYLDEIDWLG 150
The following BLAST results are available for this feature:
BLAST of EWM22843.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103482|gb|EWM22843.1|2.975e-114100.00hypothetical protein Naga_100293g4 [Nannochloropsi... [more]
gi|553186721|ref|XP_005854477.1|1.244e-33100.00hypothetical protein NGA_0194900 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7850rna7850Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications