rna7849, rna7849 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7849
Unique Name	rna7849
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002474.1:123788..124430 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100293g5.8352.mrna
Orig protein id	gnl\|cribi\|Naga_100293g5.8352
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:123788..124430 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100293g5	gene7603	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7849	rna7849-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22846.1	cds7827	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at CM002474.1:123788..124430-
coding sequence from alignment at CM002474.1:123788..124430-

protein sequence of rna7849

>rna7849-protein ID=rna7849-protein|Name=rna7849|organism=Nannochloropsis gaditana|type=polypeptide|length=164bp
MASPFSSTGGKLGLASKVQTQGSCHDAENSDGCCLAGVDDRLEALAHSVS
QDVIPGLERELNKVRGWLAMLDARQPVGCISARANPSGLSKTQSLSERSG
ESEAVPISQSELNLKVHHKLETLNTAVRVFKVRNPNGTGYQLQGADEDDN
LLTCDMQREIWIIA

mRNA from alignment at CM002474.1:123788..124430-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7849 ID=rna7849|Name=rna7849|organism=Nannochloropsis gaditana|type=mRNA|length=643bp|location=Sequence derived from alignment at CM002474.1:123788..124430- (Nannochloropsis gaditana)
ATGGCCTCGCCGTTTTCCTCAACTGGGGGTAAGCTGGGGCTGGCTTCGAA
GGTACAGACACAGGGTAGTTGTCACGACGCGGAAAATTCAGATGGTTGCT
GCCTTGCTGGCGTCGACGACAGACTCGAGGCTTTGGCACACTCAGTTTCA
CAAGACGTTATTCCCGGTTTAGAGCGTGAGCTGAATAAGGTAATCAATGG
AGCGAAACGGAACAGGGTCTTTGGGGAAGGAACCGGGAATCTCTCATCAT
TTTATCTACTTATGTAGGTGCGAGGTTGGTTGGCAATGCTGGACGCTCGT
CAACCTGTGGGGTGTATTTCCGCGCGCGCTAATCCGTCGGGCTTGTCAAA
GACACAATCGTTATCTGAGCGCAGCGGAGAAAGCGAGGCGGTTCCGATTT
CTCAGTCGGAATTGAATTTGAAGGTGCATCATAAACTTGAGACATTGAAT
ACCGCGGTGCGGGTGTTCAAGGTAAGAAATCCGAGTACATGCTTAAACCA
AGTCTCGTTGTGAAAGCTAATTGTATATAATAATATCGAGCATCCTACTG
ACAGACGGCACTGGGTACCAATTACAAGGCGCCGATGAAGACGACAACTT
ATTGACGTGCGATATGCAGAGAGAAATATGGATAATCGCTTGA

Coding sequence (CDS) from alignment at CM002474.1:123788..124430-

>rna7849 ID=rna7849|Name=rna7849|organism=Nannochloropsis gaditana|type=CDS|length=1485bp|location=Sequence derived from alignment at CM002474.1:123788..124430- (Nannochloropsis gaditana)
ACGGCACTGGGTACCAATTACAAGGCGCCGATGAAGACGACAACTTATTG
ACGTGCGATATGCAGAGAGAAATATGGATAATCGCTTGAGTGCGAGGTTG
GTTGGCAATGCTGGACGCTCGTCAACCTGTGGGGTGTATTTCCGCGCGCG
CTAATCCGTCGGGCTTGTCAAAGACACAATCGTTATCTGAGCGCAGCGGA
GAAAGCGAGGCGGTTCCGATTTCTCAGTCGGAATTGAATTTGAAGGTGCA
TCATAAACTTGAGACATTGAATACCGCGGTGCGGGTGTTCAAGGTAAGAA
ATCCGAATGGCCTCGCCGTTTTCCTCAACTGGGGGTAAGCTGGGGCTGGC
TTCGAAGGTACAGACACAGGGTAGTTGTCACGACGCGGAAAATTCAGATG
GTTGCTGCCTTGCTGGCGTCGACGACAGACTCGAGGCTTTGGCACACTCA
GTTTCACAAGACGTTATTCCCGGTTTAGAGCGTGAGCTGAATAAGACGGC
ACTGGGTACCAATTACAAGGCGCCGATGAAGACGACAACTTATTGACGTG
CGATATGCAGAGAGAAATATGGATAATCGCTTGAGTGCGAGGTTGGTTGG
CAATGCTGGACGCTCGTCAACCTGTGGGGTGTATTTCCGCGCGCGCTAAT
CCGTCGGGCTTGTCAAAGACACAATCGTTATCTGAGCGCAGCGGAGAAAG
CGAGGCGGTTCCGATTTCTCAGTCGGAATTGAATTTGAAGGTGCATCATA
AACTTGAGACATTGAATACCGCGGTGCGGGTGTTCAAGGTAAGAAATCCG
AATGGCCTCGCCGTTTTCCTCAACTGGGGGTAAGCTGGGGCTGGCTTCGA
AGGTACAGACACAGGGTAGTTGTCACGACGCGGAAAATTCAGATGGTTGC
TGCCTTGCTGGCGTCGACGACAGACTCGAGGCTTTGGCACACTCAGTTTC
ACAAGACGTTATTCCCGGTTTAGAGCGTGAGCTGAATAAGACGGCACTGG
GTACCAATTACAAGGCGCCGATGAAGACGACAACTTATTGACGTGCGATA
TGCAGAGAGAAATATGGATAATCGCTTGAGTGCGAGGTTGGTTGGCAATG
CTGGACGCTCGTCAACCTGTGGGGTGTATTTCCGCGCGCGCTAATCCGTC
GGGCTTGTCAAAGACACAATCGTTATCTGAGCGCAGCGGAGAAAGCGAGG
CGGTTCCGATTTCTCAGTCGGAATTGAATTTGAAGGTGCATCATAAACTT
GAGACATTGAATACCGCGGTGCGGGTGTTCAAGGTAAGAAATCCGAATGG
CCTCGCCGTTTTCCTCAACTGGGGGTAAGCTGGGGCTGGCTTCGAAGGTA
CAGACACAGGGTAGTTGTCACGACGCGGAAAATTCAGATGGTTGCTGCCT
TGCTGGCGTCGACGACAGACTCGAGGCTTTGGCACACTCAGTTTCACAAG
ACGTTATTCCCGGTTTAGAGCGTGAGCTGAATAAG

Synonyms

Publications