rna7835, rna7835 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7835
Unique Name	rna7835
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1155
Alignment location	CM002474.1:80951..82976 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100988g2.3593.mrna
Orig protein id	gnl\|cribi\|Naga_100988g2.3593
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:80951..82976 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100988g2	gene7591	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7835	rna7835-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22860.1	cds7814	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:80951..82976+
coding sequence from alignment at CM002474.1:80951..82976+

mRNA sequence

>rna7835 ID=rna7835|Name=rna7835|organism=Nannochloropsis gaditana|type=mRNA|length=1155bp
CATAACGTGTGGTTGCGGACAATCGGGTATTTTCTGATATATATACCGAC
CTGGCTTGCATGTACAGGGTGGACAAGAAGCACATGGAGGAGCGAGGAGG
TGGCCTTCAGGATGGAGACCGCCAGGATTTTGTGGCCAAGGAAAAGGCAT
TAAGAGCAGCGCTTCTGCTTCAGAAACAAAAGAAAGAGGAATGTGAAATG
TCAGCACAGCGAAGGGAAAAAGAGGGACCTGACATATCGGAGAGGTCACG
ACTGGAGCGTCACGCGTTGGAAAAGCACCCCACCCCAGTGGACGCAGAGG
CGATTGTAAGCCACGAAAAGGATGGGAAAGCTTTGCAATCGACACTGATG
CAAAAGAAAGACAGAAAGGAGACATATTCCACGGACTTGGGCGAACAGAG
AATGCAGGGAGAAGCCGATCAGGGGGAGGTGAAGGGAAACGTGCGGTTGC
GTCCAGGAGGTGGCAGGATGACGGAAAAAGAGGAGGAGAGCCAGTGGTCC
GAAGACGGCGAACACGAAAGGAGCGAGAAAAGGGCTGTCAGAGAAAGTGG
TGCGGAAGAAAGAGGACGCGGGCGATGGAGTGATGACGACGATGATGATG
AGGAGGAGGCAGATCGCAGCGTGAGGGGCGCACGAAGCCCGAGGGATGGA
ACAAACGGGACAGGAAGGAGCGAGATGGATGCGGAAGATGAGCAAGCACC
GGCAAGAGGGGCAGACGGCGGGTCTCGGCGTATGCCACAGACGTCCCCCC
CTCCCTCCCCCGCGTCCTCCCCCTCTCCTTCGACCTCGCCCGGCGCGCAG
ACCCGTCGATCCGGACAGCAGGCTTCTCCTAAGGTCTCACCGAAGCGAAA
GTGCGTAGAACCAAGTGAGGGCCAGGAAGAGAATGGAAAAGGGAAAACGC
CATTGGTGTCGGAGGGGGGCGGAAGGAAGAGAGGGCGATGGGATGACTCG
AGTGAGGAGGAAGAGGGAGGGGAGGAGGAAGGTGGGGAGGAGGGGAGTGA
GGACGTGGCGGCGGAAGGGAGGGAGGGGGAGGGAGTGCAAGCAAAACTGG
CGACGGGTAGGGAGGAATTGAAGCGAGTGCTCGCCGACAAGAAGGGGGAC
AAGGCCCGGGGGGGGGCGGAGGCAGGGGGGGAGGAAAGGGAGGAAGGATC
CGAGG

protein sequence of rna7835

>rna7835-protein ID=rna7835-protein|Name=rna7835|organism=Nannochloropsis gaditana|type=polypeptide|length=512bp
MVADPPAAPPPAPPSALPAHGAQKDEPRPPSKRRNASEPKQRPPPPTSLP
NNVIATLSSSLSSQQLTGGSLGSSGAGSGNTVRPAAFIRQGQGHHPHLNP
SHVPTPISQSLRTHDATTPYTSTIHPRPPPPPSVPSSYNTAPGPSTQFRF
YLPPSDEPGIGDPTGCVSLSSHRPSARVAGQRNAPMAVFADTKSPKRAAK
GKRPRSGAGQQDAGTYLPQPPSSDIQRGSMAGYRGGHPLRERNEALAVLP
VQPSTVNTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGI
DAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVR
VPHGPPTAQALMSTQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCN
ARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLD
KFNQGRSSFDRIVGVTTRDGRKGRAMATLGWHSSEDVVQTLILRLIPLGF
HDLPGSRRRWRT

mRNA from alignment at CM002474.1:80951..82976+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7835 ID=rna7835|Name=rna7835|organism=Nannochloropsis gaditana|type=mRNA|length=2026bp|location=Sequence derived from alignment at CM002474.1:80951..82976+ (Nannochloropsis gaditana)
ATGGTGGCAGACCCGCCggcagcaccaccaccggctCCACCTTCAGCGCT
TCCAGCACATGGCGCTCAGAAGGACGAACCGCGGCCGCCAAGCAAGCGGC
GGAATGCAAGCGAACCCAAGCAacgtccaccaccgccaACAAGCCTTCCA
AACAACGTCATTGCCACCCTTTCATCCTCGCTCTCGTCGCAGCAACTCAC
GGGCGGGTCTTTAGGCTCCAGTGGGGCAGGCTCGGGGAATACCGTGAGGC
CTGCGGCTTTTATCCGCCAAGGCCAGGGGCATCACCCTCATCTCAACCCC
TCCCATGTTCCGACGCCCATCTCCCAGTCATTGAGGACCCACGATGCCAC
AACCCCTTACACTTCCACAATtcatccacgtcctcctcctcctccttctg
tcccttcctcgtatAATACCGCGCCGGGCCCCTCAACCCAGTTTCGCTTC
TACCTGCCCCCGTCGGACGAGCCGGGCATCGGCGATCCCACCGGCTGCGT
ATCTCTATCAAGCCACCGACCATCTGCAAGGGTTGCGGGACAACGAAATG
CTCCCATGGCAGTATTTGCAGACACGAAATCGCCGAAGCGAGCCgcgaaa
gggaaaagacCGAGGTCTGGAGCTGGGCAACAAGATGCTGGCACATACCT
ACCACAACCACCCTCGTCGGACATTCAGAGGGGCAGCATGGCTGGTTATC
GGGGAGGGCATCCACTCAGGGAAAGAAACGAGGCACTCGCGGTGCTGCCT
GTGCAACCTTCCACAGTCAACACTTCCATTTACCCCTTGCGAGGTAAGTA
TTCGTCGATCCCTCAgggcatcttcctcccccccacgacATTGCCTAGCC
TCTGTATATAGCCATGCCTCTTAGACCCCGCTTGAGCTCGGCCACGAGAT
TCTGTGGGAGTGATAGCCCTGACGTGCGAAACACGGCTTGGTATGGCAGG
TTCTCCCATCTCTGCCActgaccccttccctcttccctccctcatttctc
ctcccacgccaccAGGTTTCTGCGACGGAATGCTCCGTCTCCGCGCCGAA
AACCGCTTCGACCTGAAGAAAGCCATCGACTTCTCCGCGCGCGTGGAGGT
CCTCTCCTACCCTTATGGCATTGACGCGGCCTACGGGATCAACCAAGCCC
TCCGCAGCATCCTGGTCAGCAACCCCGacatgtcctccctttccccctcc
ctcgtctcctccatcaaggcctccgtgaccgccgcctcctcctcctccct
cctctccgccgtcCACGTGCGGGTGCCCCACGgcccccccacggcccagG
CCCTCATGTCCACACAGTCCGACACCGCCTGCctacccctcttcctccgc
ctcgcccgggACACGACCGCCTGCCTCATGGTTTTTCGGGGCAACGACCA
TGTCAGCGACGTCACCTGTAATGCGAGGGTAGGTgcttccgcccgccctc
cctcccgcccgccctcccgcccgccctcccgccctctcacCCTAAAACTC
CGGATGACTTGCATGTCGTCCACTCCTATCACTGCACGCatttcaccctc
ctcttccctctcttccaccttcttctcccctttcccccctccccttcccc
ccctcctccaccacctgcccagatgtcctccctcttcatgtccACGGAGG
AAATTCGTGGCCTCATCGGACAGACCGGCTTCGCCTGCTGTGCGTTTTGG
AGCCATTTTTTGGACCcagtggacgtggaagccCTCTTGGCGGGGAGCGC
GGACCTGGTCCTGGACAAGTTCAACCAGGGCCGGAGCTCTTTCGACCGGA
TCGTGGGGGTGACTACCCGGGACGGACGGAAAGGCCGCGCCATGGCCACC
CTGGGTTGGCACAGCAGCGAGGATGTGGTGCAAACCCTCATCCTGCGCCT
GATCCCTCTCGGCTTCCACGACCTCCCAGTcggggcgcgggagggaggga
gggagggagggagggtcgggggGCGGGACGTCCAGGCGGGTTGTCgaagg
ggagcaggcggcggtggaggacgtga

Coding sequence (CDS) from alignment at CM002474.1:80951..82976+

>rna7835 ID=rna7835|Name=rna7835|organism=Nannochloropsis gaditana|type=CDS|length=6156bp|location=Sequence derived from alignment at CM002474.1:80951..82976+ (Nannochloropsis gaditana)
ATGGTGGCAGACCCGCCggcagcaccaccaccggctCCACCTTCAGCGCT
TCCAGCACATGGCGCTCAGAAGGACGAACCGCGGCCGCCAAGCAAGCGGC
GGAATGCAAGCGAACCCAAGCAacgtccaccaccgccaACAAGCCTTCCA
AACAACGTCATTGCCACCCTTTCATCCTCGCTCTCGTCGCAGCAACTCAC
GGGCGGGTCTTTAGGCTCCAGTGGGGCAGGCTCGGGGAATACCGTGAGGC
CTGCGGCTTTTATCCGCCAAGGCCAGGGGCATCACCCTCATCTCAACCCC
TCCCATGTTCCGACGCCCATCTCCCAGTCATTGAGGACCCACGATGCCAC
AACCCCTTACACTTCCACAATtcatccacgtcctcctcctcctccttctg
tcccttcctcgtatAATACCGCGCCGGGCCCCTCAACCCAGTTTCGCTTC
TACCTGCCCCCGTCGGACGAGCCGGGCATCGGCGATCCCACCGGCTGCGT
ATCTCTATCAAGCCACCGACCATCTGCAAGGGTTGCGGGACAACGAAATG
CTCCCATGGCAGTATTTGCAGACACGAAATCGCCGAAGCGAGCCgcgaaa
gggaaaagacCGAGGTCTGGAGCTGGGCAACAAGATGCTGGCACATACCT
ACCACAACCACCCTCGTCGGACATTCAGAGGGGCAGCATGGCTGGTTATC
GGGGAGGGCATCCACTCAGGGAAAGAAACGAGGCACTCGCGGTGCTGCCT
GTGCAACCTTCCACAGTCAACACTTCCATTTACCCCTTGCGAGGTTTCTG
CGACGGAATGCTCCGTCTCCGCGCCGAAAACCGCTTCGACCTGAAGAAAG
CCATCGACTTCTCCGCGCGCGTGGAGGTCCTCTCCTACCCTTATGGCATT
GACGCGGCCTACGGGATCAACCAAGCCCTCCGCAGCATCCTGGTCAGCAA
CCCCGacatgtcctccctttccccctccctcgtctcctccatcaaggcct
ccgtgaccgccgcctcctcctcctccctcctctccgccgtcCACGTGCGG
GTGCCCCACGgcccccccacggcccagGCCCTCATGTCCACACAGTCCGA
CACCGCCTGCctacccctcttcctccgcctcgcccgggACACGACCGCCT
GCCTCATGGTTTTTCGGGGCAACGACCATGTCAGCGACGTCACCTGTAAT
GCGAGGatgtcctccctcttcatgtccACGGAGGAAATTCGTGGCCTCAT
CGGACAGACCGGCTTCGCCTGCTGTGCGTTTTGGAGCCATTTTTTGGACC
cagtggacgtggaagccCTCTTGGCGGGGAGCGCGGACCTGGTCCTGGAC
AAGTTCAACCAGGGCCGGAGCTCTTTCGACCGGATCGTGGGGGTGACTAC
CCGGGACGGACGGAAAGGCCGCGCCATGGCCACCCTGGGTTGGCACAGCA
GCGAGGATGTGGTGCAAACCCTCATCCTGCGCCTGATCCCTCTCGGCTTC
CACGACCTCCCAgggagcaggcggcggtggaggacgtgaATGGTGGCAGA
CCCGCCggcagcaccaccaccggctCCACCTTCAGCGCTTCCAGCACATG
GCGCTCAGAAGGACGAACCGCGGCCGCCAAGCAAGCGGCGGAATGCAAGC
GAACCCAAGCAacgtccaccaccgccaACAAGCCTTCCAAACAACGTCAT
TGCCACCCTTTCATCCTCGCTCTCGTCGCAGCAACTCACGGGCGGGTCTT
TAGGCTCCAGTGGGGCAGGCTCGGGGAATACCGTGAGGCCTGCGGCTTTT
ATCCGCCAAGGCCAGGGGCATCACCCTCATCTCAACCCCTCCCATGTTCC
GACGCCCATCTCCCAGTCATTGAGGACCCACGATGCCACAACCCCTTACA
CTTCCACAATtcatccacgtcctcctcctcctccttctgtcccttcctcg
tatAATACCGCGCCGGGCCCCTCAACCCAGTTTCGCTTCTACCTGCCCCC
GTCGGACGAGCCGGGCATCGGCGATCCCACCGGCTGCGTATCTCTATCAA
GCCACCGACCATCTGCAAGGGTTGCGGGACAACGAAATGCTCCCATGGCA
GTATTTGCAGACACGAAATCGCCGAAGCGAGCCgcgaaagggaaaagacC
GAGGTCTGGAGCTGGGCAACAAGATGCTGGCACATACCTACCACAACCAC
CCTCGTCGGACATTCAGAGGGGCAGCATGGCTGGTTATCGGGGAGGGCAT
CCACTCAGGGAAAGAAACGAGGCACTCGCGGTGCTGCCTGTGCAACCTTC
CACAGTCAACACTTCCATTTACCCCTTGCGAGGTTTCTGCGACGGAATGC
TCCGTCTCCGCGCCGAAAACCGCTTCGACCTGAAGAAAGCCATCGACTTC
TCCGCGCGCGTGGAGGTCCTCTCCTACCCTTATGGCATTGACGCGGCCTA
CGGGATCAACCAAGCCCTCCGCAGCATCCTGGTCAGCAACCCCGacatgt
cctccctttccccctccctcgtctcctccatcaaggcctccgtgaccgcc
gcctcctcctcctccctcctctccgccgtcCACGTGCGGGTGCCCCACGg
cccccccacggcccagGCCCTCATGTCCACACAGTCCGACACCGCCTGCc
tacccctcttcctccgcctcgcccgggACACGACCGCCTGCCTCATGGTT
TTTCGGGGCAACGACCATGTCAGCGACGTCACCTGTAATGCGAGGatgtc
ctccctcttcatgtccACGGAGGAAATTCGTGGCCTCATCGGACAGACCG
GCTTCGCCTGCTGTGCGTTTTGGAGCCATTTTTTGGACCcagtggacgtg
gaagccCTCTTGGCGGGGAGCGCGGACCTGGTCCTGGACAAGTTCAACCA
GGGCCGGAGCTCTTTCGACCGGATCGTGGGGGTGACTACCCGGGACGGAC
GGAAAGGCCGCGCCATGGCCACCCTGGGTTGGCACAGCAGCGAGGATGTG
GTGCAAACCCTCATCCTGCGCCTGATCCCTCTCGGCTTCCACGACCTCCC
AgggagcaggcggcggtggaggacgtgaATGGTGGCAGACCCGCCggcag
caccaccaccggctCCACCTTCAGCGCTTCCAGCACATGGCGCTCAGAAG
GACGAACCGCGGCCGCCAAGCAAGCGGCGGAATGCAAGCGAACCCAAGCA
acgtccaccaccgccaACAAGCCTTCCAAACAACGTCATTGCCACCCTTT
CATCCTCGCTCTCGTCGCAGCAACTCACGGGCGGGTCTTTAGGCTCCAGT
GGGGCAGGCTCGGGGAATACCGTGAGGCCTGCGGCTTTTATCCGCCAAGG
CCAGGGGCATCACCCTCATCTCAACCCCTCCCATGTTCCGACGCCCATCT
CCCAGTCATTGAGGACCCACGATGCCACAACCCCTTACACTTCCACAATt
catccacgtcctcctcctcctccttctgtcccttcctcgtatAATACCGC
GCCGGGCCCCTCAACCCAGTTTCGCTTCTACCTGCCCCCGTCGGACGAGC
CGGGCATCGGCGATCCCACCGGCTGCGTATCTCTATCAAGCCACCGACCA
TCTGCAAGGGTTGCGGGACAACGAAATGCTCCCATGGCAGTATTTGCAGA
CACGAAATCGCCGAAGCGAGCCgcgaaagggaaaagacCGAGGTCTGGAG
CTGGGCAACAAGATGCTGGCACATACCTACCACAACCACCCTCGTCGGAC
ATTCAGAGGGGCAGCATGGCTGGTTATCGGGGAGGGCATCCACTCAGGGA
AAGAAACGAGGCACTCGCGGTGCTGCCTGTGCAACCTTCCACAGTCAACA
CTTCCATTTACCCCTTGCGAGGTTTCTGCGACGGAATGCTCCGTCTCCGC
GCCGAAAACCGCTTCGACCTGAAGAAAGCCATCGACTTCTCCGCGCGCGT
GGAGGTCCTCTCCTACCCTTATGGCATTGACGCGGCCTACGGGATCAACC
AAGCCCTCCGCAGCATCCTGGTCAGCAACCCCGacatgtcctccctttcc
ccctccctcgtctcctccatcaaggcctccgtgaccgccgcctcctcctc
ctccctcctctccgccgtcCACGTGCGGGTGCCCCACGgcccccccacgg
cccagGCCCTCATGTCCACACAGTCCGACACCGCCTGCctacccctcttc
ctccgcctcgcccgggACACGACCGCCTGCCTCATGGTTTTTCGGGGCAA
CGACCATGTCAGCGACGTCACCTGTAATGCGAGGatgtcctccctcttca
tgtccACGGAGGAAATTCGTGGCCTCATCGGACAGACCGGCTTCGCCTGC
TGTGCGTTTTGGAGCCATTTTTTGGACCcagtggacgtggaagccCTCTT
GGCGGGGAGCGCGGACCTGGTCCTGGACAAGTTCAACCAGGGCCGGAGCT
CTTTCGACCGGATCGTGGGGGTGACTACCCGGGACGGACGGAAAGGCCGC
GCCATGGCCACCCTGGGTTGGCACAGCAGCGAGGATGTGGTGCAAACCCT
CATCCTGCGCCTGATCCCTCTCGGCTTCCACGACCTCCCAgggagcaggc
ggcggtggaggacgtgaATGGTGGCAGACCCGCCggcagcaccaccaccg
gctCCACCTTCAGCGCTTCCAGCACATGGCGCTCAGAAGGACGAACCGCG
GCCGCCAAGCAAGCGGCGGAATGCAAGCGAACCCAAGCAacgtccaccac
cgccaACAAGCCTTCCAAACAACGTCATTGCCACCCTTTCATCCTCGCTC
TCGTCGCAGCAACTCACGGGCGGGTCTTTAGGCTCCAGTGGGGCAGGCTC
GGGGAATACCGTGAGGCCTGCGGCTTTTATCCGCCAAGGCCAGGGGCATC
ACCCTCATCTCAACCCCTCCCATGTTCCGACGCCCATCTCCCAGTCATTG
AGGACCCACGATGCCACAACCCCTTACACTTCCACAATtcatccacgtcc
tcctcctcctccttctgtcccttcctcgtatAATACCGCGCCGGGCCCCT
CAACCCAGTTTCGCTTCTACCTGCCCCCGTCGGACGAGCCGGGCATCGGC
GATCCCACCGGCTGCGTATCTCTATCAAGCCACCGACCATCTGCAAGGGT
TGCGGGACAACGAAATGCTCCCATGGCAGTATTTGCAGACACGAAATCGC
CGAAGCGAGCCgcgaaagggaaaagacCGAGGTCTGGAGCTGGGCAACAA
GATGCTGGCACATACCTACCACAACCACCCTCGTCGGACATTCAGAGGGG
CAGCATGGCTGGTTATCGGGGAGGGCATCCACTCAGGGAAAGAAACGAGG
CACTCGCGGTGCTGCCTGTGCAACCTTCCACAGTCAACACTTCCATTTAC
CCCTTGCGAGGTTTCTGCGACGGAATGCTCCGTCTCCGCGCCGAAAACCG
CTTCGACCTGAAGAAAGCCATCGACTTCTCCGCGCGCGTGGAGGTCCTCT
CCTACCCTTATGGCATTGACGCGGCCTACGGGATCAACCAAGCCCTCCGC
AGCATCCTGGTCAGCAACCCCGacatgtcctccctttccccctccctcgt
ctcctccatcaaggcctccgtgaccgccgcctcctcctcctccctcctct
ccgccgtcCACGTGCGGGTGCCCCACGgcccccccacggcccagGCCCTC
ATGTCCACACAGTCCGACACCGCCTGCctacccctcttcctccgcctcgc
ccgggACACGACCGCCTGCCTCATGGTTTTTCGGGGCAACGACCATGTCA
GCGACGTCACCTGTAATGCGAGGatgtcctccctcttcatgtccACGGAG
GAAATTCGTGGCCTCATCGGACAGACCGGCTTCGCCTGCTGTGCGTTTTG
GAGCCATTTTTTGGACCcagtggacgtggaagccCTCTTGGCGGGGAGCG
CGGACCTGGTCCTGGACAAGTTCAACCAGGGCCGGAGCTCTTTCGACCGG
ATCGTGGGGGTGACTACCCGGGACGGACGGAAAGGCCGCGCCATGGCCAC
CCTGGGTTGGCACAGCAGCGAGGATGTGGTGCAAACCCTCATCCTGCGCC
TGATCCCTCTCGGCTTCCACGACCTCCCAgggagcaggcggcggtggagg
acgtga

Synonyms

Publications