EWM22860.1, cds7814 (CDS) Nannochloropsis gaditana

Overview
NameEWM22860.1
Unique Namecds7814
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:80951..81743 +
Alignment locationCM002474.1:81966..82378 +
Alignment locationCM002474.1:82573..82878 +
Alignment locationCM002474.1:82950..82976 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22860.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100988g2.3593.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:80951..81743 +
CM002474.1supercontigCM002474.1:81966..82378 +
CM002474.1supercontigCM002474.1:82573..82878 +
CM002474.1supercontigCM002474.1:82950..82976 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22860.1 vs. NCBI_GenBank
Match: gi|585103505|gb|EWM22860.1| (hypothetical protein Naga_100988g2 [Nannochloropsis gaditana])

HSP 1 Score: 1033.86 bits (2672), Expect = 0.000e+0
Identity = 512/512 (100.00%), Postives = 512/512 (100.00%), Query Frame = 0
Query:    1 MVADPPAAPPPAPPSALPAHGAQKDEPRPPSKRRNASEPKQRPPPPTSLPNNVIATLSSSLSSQQLTGGSLGSSGAGSGNTVRPAAFIRQGQGHHPHLNPSHVPTPISQSLRTHDATTPYTSTIHPRPPPPPSVPSSYNTAPGPSTQFRFYLPPSDEPGIGDPTGCVSLSSHRPSARVAGQRNAPMAVFADTKSPKRAAKGKRPRSGAGQQDAGTYLPQPPSSDIQRGSMAGYRGGHPLRERNEALAVLPVQPSTVNTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALMSTQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGRSSFDRIVGVTTRDGRKGRAMATLGWHSSEDVVQTLILRLIPLGFHDLPGSRRRWRT 512
            MVADPPAAPPPAPPSALPAHGAQKDEPRPPSKRRNASEPKQRPPPPTSLPNNVIATLSSSLSSQQLTGGSLGSSGAGSGNTVRPAAFIRQGQGHHPHLNPSHVPTPISQSLRTHDATTPYTSTIHPRPPPPPSVPSSYNTAPGPSTQFRFYLPPSDEPGIGDPTGCVSLSSHRPSARVAGQRNAPMAVFADTKSPKRAAKGKRPRSGAGQQDAGTYLPQPPSSDIQRGSMAGYRGGHPLRERNEALAVLPVQPSTVNTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALMSTQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGRSSFDRIVGVTTRDGRKGRAMATLGWHSSEDVVQTLILRLIPLGFHDLPGSRRRWRT
Sbjct:    1 MVADPPAAPPPAPPSALPAHGAQKDEPRPPSKRRNASEPKQRPPPPTSLPNNVIATLSSSLSSQQLTGGSLGSSGAGSGNTVRPAAFIRQGQGHHPHLNPSHVPTPISQSLRTHDATTPYTSTIHPRPPPPPSVPSSYNTAPGPSTQFRFYLPPSDEPGIGDPTGCVSLSSHRPSARVAGQRNAPMAVFADTKSPKRAAKGKRPRSGAGQQDAGTYLPQPPSSDIQRGSMAGYRGGHPLRERNEALAVLPVQPSTVNTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALMSTQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGRSSFDRIVGVTTRDGRKGRAMATLGWHSSEDVVQTLILRLIPLGFHDLPGSRRRWRT 512          
BLAST of EWM22860.1 vs. NCBI_GenBank
Match: gi|553178413|ref|XP_005852550.1| (hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526] >gi|422295983|gb|EKU23282.1| hypothetical protein NGA_0687300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 989.564 bits (2557), Expect = 0.000e+0
Identity = 498/534 (93.26%), Postives = 505/534 (94.57%), Query Frame = 0
Query:    1 MVADPPAAPPPAPPSALPAHGAQKDEPRPPSKRRNASEPKQRPPPPTSLPNNVIATLSSSLSSQQLTGGSLGSSGAGSGNTVRPAAFIRQGQGHHPHLNPSHVPTPISQSLRTHDATTPYTSTIHPRPPPPPSVPSSYNTAPGPSTQFRFYLPPSDEPGIGDPTGCVSLSSHRPSARVAGQRNAPMAVFADTKSPKRAAKGKRPRSGAGQQDAGTYLPQPPSSDIQRGSMAGYRGGHPLRERNEALAVLPVQPSTVNTSIYPLR----------------------GFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALMSTQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGRSSFDRIVGVTTRDGRKGRAMATLGWHSSEDVVQTLILRLIPLGFHDLP-GSRRRWR 511
            MVA+PP+APPPAPPSALPAHGAQKDEPRPPSKRRNASEPK+RPPPPTSLPNNVIATLSSSLSSQQL+GGSLGSSGAGSGNTVRPAAFIRQGQGHHPHLNPSHVPTPISQSLRTHDATTP+TSTIHPRPPPPPSVPSSYNTAPGPSTQFRFYLPPSDEPGIGDPTGCVSLSSHRPSARVAGQRNAPMAVFADTKSPKRAAKG+RPRSGAGQQDAGTYLPQPPSSDIQRGSMAGYRGGHPLRERNEALAVLPVQPSTVNTSIYPLR                      GFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALMSTQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGRSS DRIVGVTTRDGR GRAMATLGWHSSEDVVQTLILRLIPLGFHD+P G R   R
Sbjct:    1 MVAEPPSAPPPAPPSALPAHGAQKDEPRPPSKRRNASEPKRRPPPPTSLPNNVIATLSSSLSSQQLSGGSLGSSGAGSGNTVRPAAFIRQGQGHHPHLNPSHVPTPISQSLRTHDATTPHTSTIHPRPPPPPSVPSSYNTAPGPSTQFRFYLPPSDEPGIGDPTGCVSLSSHRPSARVAGQRNAPMAVFADTKSPKRAAKGRRPRSGAGQQDAGTYLPQPPSSDIQRGSMAGYRGGHPLRERNEALAVLPVQPSTVNTSIYPLRGSPISATDPFPPPSLISPLTPPGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGIDAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQALMSTQSDTACLPLFLRLARDTTACLMVFRGNDHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQGRSSIDRIVGVTTRDGRWGRAMATLGWHSSEDVVQTLILRLIPLGFHDVPVGVREEGR 534          
BLAST of EWM22860.1 vs. NCBI_GenBank
Match: gi|585109633|gb|EWM27402.1| (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])

HSP 1 Score: 77.7962 bits (190), Expect = 1.339e-11
Identity = 79/273 (28.94%), Postives = 113/273 (41.39%), Query Frame = 0
Query:  249 LPVQPSTVNTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGI-DAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQAL-MSTQSDTACLPLFLRLARDTTACLMVFRGN-DHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLD-PVDVEALLAGSADLVLDKFNQGRSSFDRIVGVTTRDGRKG-------RAMATLGWHSSE-DVVQTLILRLIPLGFHDLPGSRRR 509
            LP+  ST  + ++   G    + RL A+   D +K  +  A +   S   G+ D   G+   L  +L + P   + +P    +    V                  GPP   A   S   D +   L  +LA D  AC +V   N   +  V CN RMS LF+S+EE+ GL  QT  A  +FW  FL  P   E + A SA +V         S D I+    +   KG       + +AT+G   +       LILRL+P G  DL   RR+
Sbjct:  289 LPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQ--AFAPKRRKAKSGGVGE---------------RGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHT---PSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQ 541          
BLAST of EWM22860.1 vs. NCBI_GenBank
Match: gi|553186625|ref|XP_005854455.1| (hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526] >gi|553187875|ref|XP_005854696.1| hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >gi|422294361|gb|EKU21661.1| hypothetical protein NGA_0244302 [Nannochloropsis gaditana CCMP526] >gi|422294601|gb|EKU21901.1| hypothetical protein NGA_0244301 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.411 bits (189), Expect = 1.940e-11
Identity = 79/273 (28.94%), Postives = 113/273 (41.39%), Query Frame = 0
Query:  249 LPVQPSTVNTSIYPLRGFCDGMLRLRAENRFDLKKAIDFSARVEVLSYPYGI-DAAYGINQALRSILVSNPDMSSLSPSLVSSIKASVTAASSSSLLSAVHVRVPHGPPTAQAL-MSTQSDTACLPLFLRLARDTTACLMVFRGN-DHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLD-PVDVEALLAGSADLVLDKFNQGRSSFDRIVGVTTRDGRKG-------RAMATLGWHSSE-DVVQTLILRLIPLGFHDLPGSRRR 509
            LP+  ST  + ++   G    + RL A+   D +K  +  A +   S   G+ D   G+   L  +L + P   + +P    +    V                  GPP   A   S   D +   L  +LA D  AC +V   N   +  V CN RMS LF+S+EE+ GL  QT  A  +FW  FL  P   E + A SA +V         S D I+    +   KG       + +AT+G   +       LILRL+P G  DL   RR+
Sbjct:  289 LPLLDSTSASILHARNGVSGAIARLAAQGMLDWEKVFNARALIRACSQARGVADMTAGVLPLLDHLLDTQPQ--AFAPKRRKAKSGGVGE---------------RGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPGLYELMGAFSAIMVQSTHT---PSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQ 541          
BLAST of EWM22860.1 vs. NCBI_GenBank
Match: gi|585100580|gb|EWM20727.1| (hypothetical protein Naga_102498g1 [Nannochloropsis gaditana])

HSP 1 Score: 62.3882 bits (150), Expect = 5.193e-8
Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 0
Query:  376 RLARDTTACLMVFRGN-DHVSDVTCNARMSSLFMSTEEIRGLIGQTGFACCAFWSHFLDPVDVEALLAGSADLVLDKFNQG-RSSFDRIVGV 465
            RL +D TAC +V RG   H   V CN RM++LF+   EI+GL+ QTG    AFW  F   V  E+LL+  A LV      G ++  D ++ V
Sbjct:   30 RLTKDETACYLVSRGGFGHHHVVECNQRMATLFLPNPEIQGLVHQTGLGSSAFWGRF---VCNESLLSLYAALVTLMLGYGSKTQIDVVLKV 118          
The following BLAST results are available for this feature:
BLAST of EWM22860.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585103505|gb|EWM22860.1|0.000e+0100.00hypothetical protein Naga_100988g2 [Nannochloropsi... [more]
gi|553178413|ref|XP_005852550.1|0.000e+093.26hypothetical protein NGA_0687300 [Nannochloropsis ... [more]
gi|585109633|gb|EWM27402.1|1.339e-1128.94hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
gi|553186625|ref|XP_005854455.1|1.940e-1128.94hypothetical protein NGA_0244301 [Nannochloropsis ... [more]
gi|585100580|gb|EWM20727.1|5.193e-841.30hypothetical protein Naga_102498g1 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7835rna7835Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications