rna7831, rna7831 (mRNA) Nannochloropsis gaditana

Overview
Namerna7831
Unique Namerna7831
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1349
Alignment locationCM002474.1:71560..73133 +

Link to JBrowse

Properties
Property NameValue
Productintraflagellar transport particle protein ift140
Orig transcript idgnl|cribi|Naga_100341g5.8453.mrna
Orig protein idgnl|cribi|Naga_100341g5.8453
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:71560..73133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100341g5gene7587Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7831rna7831-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22867.1cds7810Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7831 ID=rna7831|Name=rna7831|organism=Nannochloropsis gaditana|type=mRNA|length=1349bp
ATGTGCGTGGACCTTACACTCTTTAAATCACTTCCATTGGCTATCCAGAC
ACAATGCCCTCGTCGACTGCAAGCCAAGACTTTTCGGCCTCACCCACGGC
AGAAGAATGGTTTGCGTCGGCCACCCGGGTGCCCCTCGTCATGCCTGGTG
CTGAGAAGCAGATAATAAACATTTCCGCACATTTTTTCGCGCGTGGGAAT
CCTGCAGCTACGTCCCTCTCTTTCTCTTCACTGCCCTCGCGTTCTCCGTC
CTCTCCTGTCATCACCTTTATCCACGGATTTCCCACTTCCAGTCACGATT
TCGCCTCCCTGCTCCCCGCCTTGGCCCCCATGGCGACCCTACTTTTGTGG
GACATGTGGGGCTACGGTGATTCCGACAAGGAGCCGCTGGGCAAAGACCA
GAGAGATGATGGAGGAGGAGGACAAAACATCGCAAGAGAAGATTTTAGCG
TTTTCAGCCAGGCAGATCTACTTGAGGCACTGTGGAGTCACTTCGGCATC
GGCGAAACGCACATCGTTTGCCACGATCTCGGCGACACTGTATTACAAGA
ACTCGCAGCACGTGGTCGGGCGAGGCAACTGGGGAGCGAGCAAGGGACGG
AGACAAAAAGGACCGTGATACGTGACGTGTTCATGTTCAACGGGGGAATC
TTCCCCCGCCTGCACAGACCCGTGCTCCTTCAAAACCTTCTCCTCGTCCC
GGCCCTCGCGCCTTTTTTTTGCCGGTACTTGATGAACGAGTGGACCTTCA
ACAAAGGTATCTGCGGGGTCTTCTCCCCGGCCCACCCTCCTTCTGCCGTC
CTCCTCCATGACATGTGGACCGGGGTGCTTCGGAGGGAGGGTTATCGGCA
CTACCATTTGCTGATCCGGTACCTGGTGGAGCGACAAAGGCACCAAACGC
GGTGGGAGGAGGGCTTGGACTGGTTGGTGCGGGGCGGAGGTGGCAAGGGC
CGCGTGCATTTTGAGTGGGGAAGTCGAGACCCCGTGTCCGGTGCCCACCT
TGCCGTCGAGTTGCGGCGCCGGTACCAAGACCTGGGGCTAAGGCTGCTGG
AGGGGGAGGAAGAAGGGGAAAGAGAAGGAAAAGGGAGGGCAATGGCGAGG
GTAACATTGCGGGAGAAGGAGTTGGGGCACTGGCCGTTCCTGGAAGACGT
GCCTGGGGCCCGGGGGGCCTTGCGTGCGTTTTTCCAGGGGGAAGGATGAA
AGGGAGAGAGGTGGCGAGGATTATGGATTCGGGTGGCAAAGGAAGCGGTG
CATGAAACAGCGCGGAAGCTTGCTCGGTGGGTAAAACGCGTGCGCGAGTT
TGAAGACTTGTATATTAATAATAAAGTAAAAACCTTTGACACTTTCTCT
back to top

protein sequence of rna7831

>rna7831-protein ID=rna7831-protein|Name=rna7831|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MPSFAGLSYENFSLHAKSCLKAFHFQLFSQDWHAAHQSLRIIFPQRQPDS
KAGKKCQNEEPNDHNQQLRKEGNCKQQLLCIWRNMAHLSLRNRRVEVAEH
CLSYMGHIRGVHAVREAVSSPSLYPSLPSLTSSTCSTDIPLGMVAIQLGL
LQEAAALYIRAKRFDLLNRMYQAAGKWEKALQVAEKDDRLHLRTTHFQYA
RRLERMSEWDKAIFHYEKAGAQAREVPRMLHKAGKIEDLEKYLSRQKSTV
ADRESGDAKMLWRWWGRYCESKRDVKAAKEAYRKAADLVALVRLACVAQD
VGAAEALLDDKDAGALHQGEISWRQASNHAMKAAASYHLARHYEGALYDV
LPALTHYARAGCFKHCIRLAKAHELDNDVMQYALQSGQADLMQDSAQYFL
KLDQSERAQELIGKARKMRES
back to top

mRNA from alignment at CM002474.1:71560..73133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7831 ID=rna7831|Name=rna7831|organism=Nannochloropsis gaditana|type=mRNA|length=1574bp|location=Sequence derived from alignment at CM002474.1:71560..73133+ (Nannochloropsis gaditana)
TCCCCAGTCCCCCCACTCCGTCCACCCCCCCTTCGTCGCTTATTGTTGCG
CAAATAATGCCAAGTTTTGCCGGCTTGAGTTACGAAAATTTCTCTCTCCA
CGCCAAATCGTGCCTCAAGGCCTTTCACTTCCAATTGTTTTCGCAAGACT
GGCACGCGGCTCACCAATCTTTGAGAATCATCTTTCCTCAGCGGCAACCC
GATAGcaaggcgggaaaaaaatgccAGAACGAGGAGCCCAACGACCACAA
CCAACAACtgcggaaagaggggaatTGTAAGCAACAGCTACTCTGCATCT
GGCGCAACATGGCTCATCTCTCTTTACGGAATCGTCGCGTTGAAGTCGCC
GAGCACTGTTTAAGCTACATGGGCCACATCCGAGGTGTGCATGCCGTTCG
AGAAGCTGTGTCTAGCCCCTCTCtttacccctcccttccttccttgacct
cctccacgtgctcTACGGACATTCCCCTTGGGATGGTTGCCATCCAGCTT
GGCCTGCTTCAGGAAGCAGCTGCTCTTTACATCCGTGCAAAACGTTTCGA
TCTCCTCAATCGCATGTACCAGGCGGCAGGAAAATGGGAGAAGGCTTTAC
AGGTAGCTGAGAAAGATGATAGGTTACATCTTCGCACAACCCACTTTCAG
TACGCCCGGCGCTTGGAAAGGATGAGTGAATGGGATAAGGCGATCTTTCA
CTATGAGAAGGCAGGAGCACAGGCGCGGGAGGTGCCAAGGATGTTGCACA
AAGCAGGAAAAATCGAAGATTTGGAAAAATACCTGTCGAGACAGAAGTCG
ACAGTAGCAGACCGAGAATCTGGAGACGCAAAGATGCTTTGGCGTTGGTG
GGGAAGGTATTGTGAGTCAAAGAGAGACGTAAAAGCTGCAAAGGAGGCGT
ACCGGAAGGCGGCAGACCTGGTGGCTCTGGTGAGACTCGCCTGCGTTGCC
CAAGATGTGGGTGCTGCAGAAGCGTTGTTGGATGACAAAGATGCCGGGGC
ATTACATCAAGGTGAAATATCCTGGAGACAGGCCTCCAACCACGCAATGA
AAGCCGCGGCTTCCTATCACCTCGCCCGTCACTATGAGGGAGCCCTCTAC
GATGTTCTTCCCGCTCTCACCCACTACGCGCGTGCAGGATGTTTCAAGCA
CTGTATACGTTTAGCCAAGGCGCATGAGCTCGACAATGACGTCATGCAAT
ATGCCTTACAAAGCGGGCAGGCCGACCTAATGCAAGATAGCGCCCAATAT
TTCCTGAAACTGGACCAGAGTGAAAGAGCACAGGAGTTGATAGGCAAGGC
CAGAAAAATGCGAGAATCTTGACCCAGGGAGATGTTGTGAATTTaattaa
aaaaggaaagtagTTCAAAACAAAGAAGGAAACGATAAATGCCGGATTAA
GGGAAGTTGACCCAATCGTCATGACACTCCGCGGCATACTATGTTCTGCC
AGTCTTAGTGTTATTAAGCCTACTTTTATTGCTCATCGCATTCCTTACCA
AGAAAAGAATTTACGCATGTTTATAGTCGCCCAGAGAGCCATACAGACAA
AGTACAAACGTCAAAAATCAAACT
back to top

Coding sequence (CDS) from alignment at CM002474.1:71560..73133+

>rna7831 ID=rna7831|Name=rna7831|organism=Nannochloropsis gaditana|type=CDS|length=1266bp|location=Sequence derived from alignment at CM002474.1:71560..73133+ (Nannochloropsis gaditana)
ATGCCAAGTTTTGCCGGCTTGAGTTACGAAAATTTCTCTCTCCACGCCAA
ATCGTGCCTCAAGGCCTTTCACTTCCAATTGTTTTCGCAAGACTGGCACG
CGGCTCACCAATCTTTGAGAATCATCTTTCCTCAGCGGCAACCCGATAGc
aaggcgggaaaaaaatgccAGAACGAGGAGCCCAACGACCACAACCAACA
ACtgcggaaagaggggaatTGTAAGCAACAGCTACTCTGCATCTGGCGCA
ACATGGCTCATCTCTCTTTACGGAATCGTCGCGTTGAAGTCGCCGAGCAC
TGTTTAAGCTACATGGGCCACATCCGAGGTGTGCATGCCGTTCGAGAAGC
TGTGTCTAGCCCCTCTCtttacccctcccttccttccttgacctcctcca
cgtgctcTACGGACATTCCCCTTGGGATGGTTGCCATCCAGCTTGGCCTG
CTTCAGGAAGCAGCTGCTCTTTACATCCGTGCAAAACGTTTCGATCTCCT
CAATCGCATGTACCAGGCGGCAGGAAAATGGGAGAAGGCTTTACAGGTAG
CTGAGAAAGATGATAGGTTACATCTTCGCACAACCCACTTTCAGTACGCC
CGGCGCTTGGAAAGGATGAGTGAATGGGATAAGGCGATCTTTCACTATGA
GAAGGCAGGAGCACAGGCGCGGGAGGTGCCAAGGATGTTGCACAAAGCAG
GAAAAATCGAAGATTTGGAAAAATACCTGTCGAGACAGAAGTCGACAGTA
GCAGACCGAGAATCTGGAGACGCAAAGATGCTTTGGCGTTGGTGGGGAAG
GTATTGTGAGTCAAAGAGAGACGTAAAAGCTGCAAAGGAGGCGTACCGGA
AGGCGGCAGACCTGGTGGCTCTGGTGAGACTCGCCTGCGTTGCCCAAGAT
GTGGGTGCTGCAGAAGCGTTGTTGGATGACAAAGATGCCGGGGCATTACA
TCAAGGTGAAATATCCTGGAGACAGGCCTCCAACCACGCAATGAAAGCCG
CGGCTTCCTATCACCTCGCCCGTCACTATGAGGGAGCCCTCTACGATGTT
CTTCCCGCTCTCACCCACTACGCGCGTGCAGGATGTTTCAAGCACTGTAT
ACGTTTAGCCAAGGCGCATGAGCTCGACAATGACGTCATGCAATATGCCT
TACAAAGCGGGCAGGCCGACCTAATGCAAGATAGCGCCCAATATTTCCTG
AAACTGGACCAGAGTGAAAGAGCACAGGAGTTGATAGGCAAGGCCAGAAA
AATGCGAGAATCTTGA
back to top
Synonyms
Publications