rna7825, rna7825 (mRNA) Nannochloropsis gaditana

Overview
Namerna7825
Unique Namerna7825
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length363
Alignment locationCM002474.1:59556..60682 -

Link to JBrowse

Properties
Property NameValue
Productphosphatidate cytidylyltransferase
Orig transcript idgnl|cribi|Naga_100819g2.1350.mrna
Orig protein idgnl|cribi|Naga_100819g2.1350
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:59556..60682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100819g2gene7581Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22868.1cds7804Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7825rna7825-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7825 ID=rna7825|Name=rna7825|organism=Nannochloropsis gaditana|type=mRNA|length=363bp
ATGGCTGAAATAGGTGCGGCCACTGCTCGTGGCGCCGAGGGGCCAAATGC
TCCCAGACACGGAGGGCCTCAAATTGACTGGCAAGGTCTTATACAGCAAG
TCCTAAAAACCATGACAATGGTCTGGGTCATGAATTCCGTCATGCGACAA
TTCACGGGCCCTCCAAGTCCCCCCTCCTCGCCCTCCGCGGTGGACGTGAC
CGGCGCTGGAGACGCGCGAAGTGGAACGAATGAGATACTGCCCTGGCGCG
GCCCCCTGCGCATGATGTGGCCAGAGGGCACCCCTATGTTCCTCCGGGTA
TACTTGACCGAGCACCGGGACTTCGACCGTCGCCGCGACCACCCCAAGTT
CCTAAAGAGATGA
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protein sequence of rna7825

>rna7825-protein ID=rna7825-protein|Name=rna7825|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
MSPPALSSSSLDSNFPTVSSFLTAKVLPGSSHDARALLLTSLAMVSYAEG
VKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLA
LTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFW
RRLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLG
RGRIPWCPSKSWIGTVGFIVASSFTSACFVLYSSRQGWTIDDGGRHGRKG
MERVWRRVWGSTLLSAAAETLPVPEGWDNLMVFGAALLADWLVMRGARTS
V
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mRNA from alignment at CM002474.1:59556..60682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7825 ID=rna7825|Name=rna7825|organism=Nannochloropsis gaditana|type=mRNA|length=1127bp|location=Sequence derived from alignment at CM002474.1:59556..60682- (Nannochloropsis gaditana)
CTCTCACGCTATTCCCACAAACAGACGCTGACAGGCGTTTGCTATGTCAC
CACCGGCCCTGTCATCGTCATCCTTGGACAGCAATTTCCCCACCGTATCA
TCGTTTTTAACTGCTAAAGTGCTTCCCGGGTCATCGCACGATGCTCGTGC
CCTCCTCCTCACGTCTCTGGCCATGGTGTCTTATGCGGAAGGAGTCAAAC
TCCTTGCCACTCGTAATATTTGTGCTTCTACGACCGCACGAAAGCTGATG
CACATCGGCTGCGGCCCTATCTTCTTGCTTTGTTGGCCGCTGTTTTCTTC
TTTGCCTTCTGCCTCGTACTTTGCGGCTGGAGCACCCCTTGCCCTGACAT
CATTCTTCACTATCGTGGGCCTGGGTATCATAGTCAATCCAGCGACCGTC
AAAAGTATGAGCAGGACAGGTGCGAGGCAAGAGCTTTTGCGCGGGCCTTT
ATTTTATGGTAGCGTTATGATAATTGCAACCCTTCTGTTCTGGCGACGAC
TCACGGCAGCCTTGTGTATATCCTGTCTGTGTGCTGGTGATGGTTTCGCT
GACGTGGTTGGCCGAAAGTTTGCGCCCGCTGTCCCGTCCTATGGCTTTGA
GAAGAAGCAAGACGACCTCTTGCGCCGTCAGAAAACCCTCGGGCGCGGAC
GGATCCCCTGGTGCCCCAGCAAGTCGTGGATTGGGACCGTGGGATTTATC
GTAGCCAGCTCGTTCACCTCCGCCTGCTTCGTCCTGTACAGTTCTCGGCA
AGGCTGGACCATCGATGACGGAGGACGGCACGGGCGGAAGGGAATGGAAC
GGGTATGGAGGAGGGTGTGGGGATCCACCTTGTTGAGCGCGGCGGCAGAG
ACCTTGCCGGTGCCGGAGGGGTGGGACAATTTGATGGTGTTTGGGGCGGC
CTTGTTGGCTGACTGGCTAGTCATGAGAGGTGCGAGGACGTCGGTGTAGC
AGTGAACAGGGGTCATGCGCGGAATGGGAGAAGGGTAGGGGGCCGGTCGC
AAAAGACAGGGCCCGGGGCATGCTGGCAGGGAACGAACTGAACGTATAGA
GTCAGAGAATGACCGAGTACAGCGACATCTATGGCTAGAGTGGGGGAAAT
TTTATGTACACTTATTATTGGTTATTG
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Coding sequence (CDS) from alignment at CM002474.1:59556..60682-

>rna7825 ID=rna7825|Name=rna7825|organism=Nannochloropsis gaditana|type=CDS|length=906bp|location=Sequence derived from alignment at CM002474.1:59556..60682- (Nannochloropsis gaditana)
ATGTCACCACCGGCCCTGTCATCGTCATCCTTGGACAGCAATTTCCCCAC
CGTATCATCGTTTTTAACTGCTAAAGTGCTTCCCGGGTCATCGCACGATG
CTCGTGCCCTCCTCCTCACGTCTCTGGCCATGGTGTCTTATGCGGAAGGA
GTCAAACTCCTTGCCACTCGTAATATTTGTGCTTCTACGACCGCACGAAA
GCTGATGCACATCGGCTGCGGCCCTATCTTCTTGCTTTGTTGGCCGCTGT
TTTCTTCTTTGCCTTCTGCCTCGTACTTTGCGGCTGGAGCACCCCTTGCC
CTGACATCATTCTTCACTATCGTGGGCCTGGGTATCATAGTCAATCCAGC
GACCGTCAAAAGTATGAGCAGGACAGGTGCGAGGCAAGAGCTTTTGCGCG
GGCCTTTATTTTATGGTAGCGTTATGATAATTGCAACCCTTCTGTTCTGG
CGACGACTCACGGCAGCCTTGTGTATATCCTGTCTGTGTGCTGGTGATGG
TTTCGCTGACGTGGTTGGCCGAAAGTTTGCGCCCGCTGTCCCGTCCTATG
GCTTTGAGAAGAAGCAAGACGACCTCTTGCGCCGTCAGAAAACCCTCGGG
CGCGGACGGATCCCCTGGTGCCCCAGCAAGTCGTGGATTGGGACCGTGGG
ATTTATCGTAGCCAGCTCGTTCACCTCCGCCTGCTTCGTCCTGTACAGTT
CTCGGCAAGGCTGGACCATCGATGACGGAGGACGGCACGGGCGGAAGGGA
ATGGAACGGGTATGGAGGAGGGTGTGGGGATCCACCTTGTTGAGCGCGGC
GGCAGAGACCTTGCCGGTGCCGGAGGGGTGGGACAATTTGATGGTGTTTG
GGGCGGCCTTGTTGGCTGACTGGCTAGTCATGAGAGGTGCGAGGACGTCG
GTGTAG
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Synonyms
Publications