EWM22868.1, cds7804 (CDS) Nannochloropsis gaditana

Overview
NameEWM22868.1
Unique Namecds7804
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:59734..60639 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22868.1
Productphosphatidate cytidylyltransferase
Orig transcript idgnl|cribi|Naga_100819g2.1350.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:59734..60639 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|585103517|gb|EWM22868.1| (phosphatidate cytidylyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 604.364 bits (1557), Expect = 0.000e+0
Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 0
Query:    1 MSPPALSSSSLDSNFPTVSSFLTAKVLPGSSHDARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVASSFTSACFVLYSSRQGWTIDDGGRHGRKGMERVWRRVWGSTLLSAAAETLPVPEGWDNLMVFGAALLADWLVMRGARTSV 301
            MSPPALSSSSLDSNFPTVSSFLTAKVLPGSSHDARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVASSFTSACFVLYSSRQGWTIDDGGRHGRKGMERVWRRVWGSTLLSAAAETLPVPEGWDNLMVFGAALLADWLVMRGARTSV
Sbjct:    1 MSPPALSSSSLDSNFPTVSSFLTAKVLPGSSHDARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVASSFTSACFVLYSSRQGWTIDDGGRHGRKGMERVWRRVWGSTLLSAAAETLPVPEGWDNLMVFGAALLADWLVMRGARTSV 301          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|1172434829|ref|WP_080810670.1| (phosphatidate cytidylyltransferase [Halomicronema hongdechloris] >gi|1209462912|gb|ASC71251.1| Phytol kinase [Halomicronema hongdechloris C2206])

HSP 1 Score: 148.673 bits (374), Expect = 8.503e-40
Identity = 80/192 (41.67%), Postives = 112/192 (58.33%), Query Frame = 0
Query:   32 HDARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRL-TAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVAS 222
             D  A L+T +  +S+ + +  LA R +   T +RKL+HIG GP+F+LCWPLFS    A Y+AA  PL  T+ F  +GLG +V+ A V+SM+R    QE+LRGPL+YG VM+I T+LFWR+     L +  +C GDG AD+VGR++                       GR ++P+ P KSW G+    VAS
Sbjct:    7 QDGLATLVTFVLALSWLKLMDGLAYRGLLQQTLSRKLIHIGTGPLFILCWPLFSDQGGARYWAALVPLTFTAKFLAIGLGWLVDAAAVQSMTRNNQPQEILRGPLYYGVVMVICTVLFWRQSPLGILALMMMCGGDGLADIVGRRW-----------------------GRHKLPFSPEKSWAGSTAMFVAS 175          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|551575073|ref|XP_005773265.1| (hypothetical protein EMIHUDRAFT_369009 [Emiliania huxleyi CCMP1516] >gi|485624863|gb|EOD20836.1| hypothetical protein EMIHUDRAFT_369009 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 144.821 bits (364), Expect = 2.094e-38
Identity = 80/182 (43.96%), Postives = 103/182 (56.59%), Query Frame = 0
Query:   33 DARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIG 214
            D  A L  S  M    EG+K+LA   +  +T  RKL+H+  GP+F+L WP F   PS++ +AA  P  +T+ F +VG G+I   A VK MSRTG R+ELLRGPL YG+V   AT+L +R  TA   +  LCAGDG ADV+GR+F                 RR K      +PW P KSW G
Sbjct:    9 DGVAFLAASATMAVLVEGLKVLAKAGVYPTTFTRKLLHMAAGPVFILTWPWFGKQPSSAVWAAAVPACMTAKFALVGAGLIQQDADVKLMSRTGDRRELLRGPLLYGAVFCAATVLGFRSATAGGALMALCAGDGMADVIGRRFG----------------RRHK------LPWSPQKSWAG 168          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|551568685|ref|XP_005770298.1| (hypothetical protein EMIHUDRAFT_436338 [Emiliania huxleyi CCMP1516] >gi|485621425|gb|EOD17869.1| hypothetical protein EMIHUDRAFT_436338 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 144.821 bits (364), Expect = 2.419e-38
Identity = 80/182 (43.96%), Postives = 103/182 (56.59%), Query Frame = 0
Query:   33 DARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIG 214
            D  A L  S  M    EG+K+LA   +  +T  RKL+H+  GP+F+L WP F   PS++ +AA  P  +T+ F +VG G+I   A VK MSRTG R+ELLRGPL YG+V   AT+L +R  TA   +  LCAGDG ADV+GR+F                 RR K      +PW P KSW G
Sbjct:   10 DGVAFLAASATMAVLVEGLKVLAKAGVYPTTFTRKLLHMAAGPVFILTWPWFGKQPSSAVWAAAVPACMTAKFALVGAGLIQQDADVKLMSRTGDRRELLRGPLLYGAVFCAATVLGFRSATAGGALMALCAGDGMADVIGRRFG----------------RRHK------LPWSPQKSWAG 169          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|470484807|ref|XP_004344106.1| (phytol kinase 2, putative [Acanthamoeba castellanii str. Neff] >gi|440799659|gb|ELR20703.1| phytol kinase 2, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 142.895 bits (359), Expect = 1.160e-37
Identity = 87/248 (35.08%), Postives = 129/248 (52.02%), Query Frame = 0
Query:   40 TSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRLTAALCI-SCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVASSFTSACFVLYSSRQGWTIDDGGRHGRKGMERVWRRVWGSTLLSAAAETLPVPEGWDNLMVFGAA 286
            T++  + + + ++ L  R + ++   RK +H+G GP+F+LCW  F     A Y+AA  P  +T  F ++GLG++ +  TV+S+SRTG R ELL+GPL YG + ++ T ++WR  +  + I   LCAGDGFAD+ GRK+                       G  R+P   SKSW G+  F VAS      +      QGW         R G+ +    +   TL+S   E+LPV + WDNL V  AA
Sbjct:   12 TTVVALLWLKAMETLRDRGVLSANACRKWIHVGTGPLFILCWLAFPQDAQARYWAAVVPGLITLRFALLGLGVLKDEKTVRSLSRTGDRTELLKGPLIYGIIFVVCTCVYWRDSSVGISILLILCAGDGFADLAGRKYG----------------------GAARLPHNRSKSWAGSCAFFVASLAFQCAYAHLFHAQGWL--------RVGLAQSLPTIVAVTLVSTVVESLPVSD-WDNLTVSLAA 228          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|1084513919|gb|OGN76041.1| (phosphatidate cytidylyltransferase [Chloroflexi bacterium GWB2_54_36])

HSP 1 Score: 142.51 bits (358), Expect = 1.396e-37
Identity = 92/251 (36.65%), Postives = 133/251 (52.99%), Query Frame = 0
Query:   33 DARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFW-RRLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVASSFTSACFVLYSSRQGWTIDDGGRHGRKGMERVWRRVWGSTLLSAAAETLPVPEGWDNLMV 282
            D  AL++T +A + +      LA R I +S  +RK++HIG GPIF+LCW LF+S PSA + AA  PL +T  F +VG+GII + A V +M+RTG R+ELLRGPL+YG V ++ T+ FW       + +  LC GDGF DV+G++ A                          +PW P K+W G++  +V   F  +  VL    Q    D            +  R+   +++ AA E+LPV +  DNL V
Sbjct:    5 DLLALVITLVAALVWLRLNDFLAHRGIISSALSRKIIHIGTGPIFVLCWLLFTSAPSARFVAAIVPLGITLQFFMVGVGIIKDKAAVDAMARTGDRRELLRGPLYYGIVFVVLTVTFWLDSPVGIIALMVLCGGDGFGDVIGKRIASRA-----------------------LPWSPRKTWAGSLAVLVG-GFVFSLLVLTVFIQFGVFD-------LTQGELVPRLLLISVVCAAVESLPVRD-LDNLTV 223          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|1084576068|gb|OGO32294.1| (phosphatidate cytidylyltransferase [Chloroflexi bacterium RBG_16_54_18])

HSP 1 Score: 140.198 bits (352), Expect = 9.939e-37
Identity = 73/186 (39.25%), Postives = 109/186 (58.60%), Query Frame = 0
Query:   36 ALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRL-TAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIV 220
            ALL+T    +++       A R   +S  +RKL+HIG GP+F+LCW LF+S P + + AA  PL  T  F ++GLGII + A+V++MSRTG R+E+L+GP++YG V ++ TLL+W       + +  +C GDG AD+ GR+F                       GR ++PW P KSW G++G +V
Sbjct:    8 ALLITFAVALTWLRINDFAAQRGWISSRLSRKLIHIGTGPLFVLCWLLFTSAPLSRFLAALVPLLFTLQFVLIGLGIIKDEASVQAMSRTGDRREILKGPVYYGLVFVVMTLLYWLESPIGMVALMLMCGGDGLADITGRRF-----------------------GRRKLPWNPDKSWAGSLGMLV 170          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|1084582003|gb|OGO37812.1| (phosphatidate cytidylyltransferase [Chloroflexi bacterium RBG_16_57_11])

HSP 1 Score: 139.043 bits (349), Expect = 3.160e-36
Identity = 75/207 (36.23%), Postives = 119/207 (57.49%), Query Frame = 0
Query:   36 ALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRL-TAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVA----SSFTSACFVLYSSRQG 237
            AL++T  A + +   +   A R    S  +RK++HIG GP+F++CW LF+ +P++ Y AA  PL++T+ F +VGLG+I + + V++MSRTG R+E+LRGPL+YG + ++ T+L+W    T  + +  +C GDG AD++GR+       YG  K                +PW   KSW+G++ F +     +    A FVL    QG
Sbjct:    8 ALIITFSAALIWLRLMDFAAHRGWVDSQLSRKIIHIGTGPLFVVCWLLFTDVPTSRYLAALVPLSITAQFALVGLGVIKDQSAVEAMSRTGDRREILRGPLYYGIIFVVVTVLYWLETPTGIVALMLVCGGDGMADIIGRR-------YGIRK----------------LPWNRKKSWMGSLWFFIGGWLLTMLILAVFVLAGVFQG 191          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|971517804|dbj|GAQ80394.1| (phosphatidate cytidyltransferase [Klebsormidium nitens])

HSP 1 Score: 140.198 bits (352), Expect = 5.381e-36
Identity = 82/227 (36.12%), Postives = 120/227 (52.86%), Query Frame = 0
Query:    7 SSSSLDSNFPTVSSFLTAKVLPGSSHDARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWRRL-TAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVGFIVASSFTSACFVLY 232
            S+S+ +     V S L+      +  D  A  +     V++ + V      N+     +RK++HIG GPIFLL W LFS  P A YFAA  PL +T+ F ++G+G+I +P  V SMSR G   ELLRGPL+YG V +++T++FWR      L +S LC GDG A+V+GRK+                       GR ++PW  SKS++GT    + S      +++Y
Sbjct:   34 SASACEQRADVVDSPLSPYFTSSTGVDITAASIALFICVAWLKSVDAAVYFNLLDMRLSRKMIHIGTGPIFLLTWNLFSDAPEARYFAAVVPLLVTAQFFLIGVGVINDPQAVASMSRRGDPSELLRGPLYYGIVFVVSTVVFWRSSPLGVLALSVLCGGDGLAEVLGRKY-----------------------GRVKLPWSRSKSYVGTAAMFLGSFLFGFGYLVY 237          
BLAST of EWM22868.1 vs. NCBI_GenBank
Match: gi|501115251|ref|WP_012164598.1| (phosphatidate cytidylyltransferase [Acaryochloris marina] >gi|158307653|gb|ABW29270.1| phosphatidate cytidylyltransferase [Acaryochloris marina MBIC11017])

HSP 1 Score: 137.117 bits (344), Expect = 2.310e-35
Identity = 75/201 (37.31%), Postives = 112/201 (55.72%), Query Frame = 0
Query:   32 HDARALLLTSLAMVSYAEGVKLLATRNICASTTARKLMHIGCGPIFLLCWPLFSSLPSASYFAAGAPLALTSFFTIVGLGIIVNPATVKSMSRTGARQELLRGPLFYGSVMIIATLLFWR-RLTAALCISCLCAGDGFADVVGRKFAPAVPSYGFEKKQDDLLRRQKTLGRGRIPWCPSKSWIGTVG-----FIVASSFTS 226
             D+  +++T +  +S+   +  LA   I     +RK++H+G GP+F+LCWP FS  P+A YFAA  PLA+T  F  +G+G I +P  V++M+RTG  +E+L+GPLFYG V ++ T+ FWR      L +  +C GDG AD+VGR+                       LG  ++P+ P KSW G+       F+ A SF S
Sbjct:   13 QDSVVMVITLMLALSWLRIMDALAANGILEQKLSRKIIHMGTGPLFVLCWPFFSPQPTACYFAALVPLAITLQFIGIGVGWIQDPDAVQAMTRTGNPKEILKGPLFYGLVFVVCTIGFWRTSPVGMLALMMMCGGDGLADIVGRR-----------------------LGVHKLPFSPEKSWAGSAAMFAGSFLFAFSFLS 190          
The following BLAST results are available for this feature:
BLAST of EWM22868.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103517|gb|EWM22868.1|0.000e+0100.00phosphatidate cytidylyltransferase [Nannochloropsi... [more]
gi|1172434829|ref|WP_080810670.1|8.503e-4041.67phosphatidate cytidylyltransferase [Halomicronema ... [more]
gi|551575073|ref|XP_005773265.1|2.094e-3843.96hypothetical protein EMIHUDRAFT_369009 [Emiliania ... [more]
gi|551568685|ref|XP_005770298.1|2.419e-3843.96hypothetical protein EMIHUDRAFT_436338 [Emiliania ... [more]
gi|470484807|ref|XP_004344106.1|1.160e-3735.08phytol kinase 2, putative [Acanthamoeba castellani... [more]
gi|1084513919|gb|OGN76041.1|1.396e-3736.65phosphatidate cytidylyltransferase [Chloroflexi ba... [more]
gi|1084576068|gb|OGO32294.1|9.939e-3739.25phosphatidate cytidylyltransferase [Chloroflexi ba... [more]
gi|1084582003|gb|OGO37812.1|3.160e-3636.23phosphatidate cytidylyltransferase [Chloroflexi ba... [more]
gi|971517804|dbj|GAQ80394.1|5.381e-3636.12phosphatidate cytidyltransferase [Klebsormidium ni... [more]
gi|501115251|ref|WP_012164598.1|2.310e-3537.31phosphatidate cytidylyltransferase [Acaryochloris ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7825rna7825Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications