rna7824, rna7824 (mRNA) Nannochloropsis gaditana

Overview
Namerna7824
Unique Namerna7824
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002474.1:55609..56292 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100931g1.4616.mrna
Orig protein idgnl|cribi|Naga_100931g1.4616
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:55609..56292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100931g1gene7579Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7824rna7824-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22870.1cds7803Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7824 ID=rna7824|Name=rna7824|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGCTGTTACGCGTCCTGGCGGCCAAAAGCGTGGACTTTTGGACAGTGAT
AGCCGAGTCAAGAGGCGGTCTGCTTGCTTCAAGCCCCGCTCCTCTTCGAC
CTCCCCGGCCTGGGAGCTGCGTCATTCGGAGCTGCGATCTCGATATACCA
CACGCATATAATCGGAAGATGACCATCGTCACGACCGCGGCGGCTGCGGT
ACTTCGTCTGAGCCGCAGAAGATGTACAGCTTCCTTGCACCAGACCATGC
GCCATGTGCGCCCGTCACCCTTCTCGACAAATGCGAGCGGACGAGCGCAT
ACACCGCCCCATCATCTGGAAGTGACACCGGAAGTCCGGCGGCGCAATCG
GTTCGTCGCATTGGCATGCGTGGTCTTTGCGGGGTCTGTCTACACGTACT
CGATCCGGAAATTGAAAGAGGAGGACCTGTCGGACCTGGAAGAGGAAGTG
ACGGTGGTGAACTTGCACGAAAGCGGGTTGAAGGCCACCAAGTTCAAGAG
CCTCCTAGAGGAGAGCCGGGGGGACGCGGCGGCGGAGGCGGCGGAGGAGG
CGGTGGAGGAGGAGATGGAGCGGCAGCTAGAGCAAGGGGTGGTGGAGGGG
GTGGCCATGATCGCGGAGGAGGAAGGGAGGGGGGAGGAGGGAGGGAAGGG
GGGTTGGAAACGCTGGGTTTTCTTCTGGCGGCGATGA
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protein sequence of rna7824

>rna7824-protein ID=rna7824-protein|Name=rna7824|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MAEIGAATARGAEGPNAPRHGGPQIDWQGLIQQVLKTMTMVWVMNSVMRQ
FTGPPSPPSSPSAVDVTGAGDARSGTNEILPWRGPLRMMWPEGTPMFLRV
YLTEHRDFDRRRDHPKFLKR
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mRNA from alignment at CM002474.1:55609..56292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7824 ID=rna7824|Name=rna7824|organism=Nannochloropsis gaditana|type=mRNA|length=684bp|location=Sequence derived from alignment at CM002474.1:55609..56292+ (Nannochloropsis gaditana)
ATGGCTGAAATAGGTGCGGCCACTGCTCGTGGCGCCGAGGGGCCAAATGC
TCCCAGACACGGAGGGCCTCAAATTGACTGGCAAGGTCTTATACAGCAAG
TCCTAAAAACCATGACAATGGTCTGGGTCATGAATTCCGTCATGCGACAA
TTCACGGGCCCTCCaagtcccccctcctcgccctccgcggTGGACGTGAC
CGGCGCTGGAGACGCGCGAAGTGGAACGAATGAGATACTGCCCTGGCGCG
GCCCCCTGCGCATGATGTGGCCAGAGGGCACCCCTATGGTGCGTAAATGA
AGGCGTCTCGGTGCAGCATTGGCAGGTGGAAGCACGTCTCCCATCATACA
cgtgaagaaggggggagggttagGGTGAGGGTCGGAGGGAGTCTTTCCTT
TGACAGCGCACGTGATAACTAAACACGGAGCATGCCTCTcagggaaaggc
aggggggcggagatagataagaagaagatgggggGTAGATTTAGGCAGCT
CTTGCAACCCtcatctctcctcctcccacggccctccctccccctctccc
tcagtTCCTCCGGGTATACTTGACCGAGCACCGGGACTTCGACCGTCGCC
GCGACCACCCCAAGTTCCTGTTGTGGGAAGAGCGGGGCTTGGCCTTCGAT
TGGGCGGAGGGCAACGCGCgaaagaaagagatga
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Coding sequence (CDS) from alignment at CM002474.1:55609..56292+

>rna7824 ID=rna7824|Name=rna7824|organism=Nannochloropsis gaditana|type=CDS|length=1089bp|location=Sequence derived from alignment at CM002474.1:55609..56292+ (Nannochloropsis gaditana)
ATGGCTGAAATAGGTGCGGCCACTGCTCGTGGCGCCGAGGGGCCAAATGC
TCCCAGACACGGAGGGCCTCAAATTGACTGGCAAGGTCTTATACAGCAAG
TCCTAAAAACCATGACAATGGTCTGGGTCATGAATTCCGTCATGCGACAA
TTCACGGGCCCTCCaagtcccccctcctcgccctccgcggTGGACGTGAC
CGGCGCTGGAGACGCGCGAAGTGGAACGAATGAGATACTGCCCTGGCGCG
GCCCCCTGCGCATGATGTGGCCAGAGGGCACCCCTATGtTCCTCCGGGTA
TACTTGACCGAGCACCGGGACTTCGACCGTCGCCGCGACCACCCCAAGTT
CCTaaagagatgaATGGCTGAAATAGGTGCGGCCACTGCTCGTGGCGCCG
AGGGGCCAAATGCTCCCAGACACGGAGGGCCTCAAATTGACTGGCAAGGT
CTTATACAGCAAGTCCTAAAAACCATGACAATGGTCTGGGTCATGAATTC
CGTCATGCGACAATTCACGGGCCCTCCaagtcccccctcctcgccctccg
cggTGGACGTGACCGGCGCTGGAGACGCGCGAAGTGGAACGAATGAGATA
CTGCCCTGGCGCGGCCCCCTGCGCATGATGTGGCCAGAGGGCACCCCTAT
GtTCCTCCGGGTATACTTGACCGAGCACCGGGACTTCGACCGTCGCCGCG
ACCACCCCAAGTTCCTaaagagatgaATGGCTGAAATAGGTGCGGCCACT
GCTCGTGGCGCCGAGGGGCCAAATGCTCCCAGACACGGAGGGCCTCAAAT
TGACTGGCAAGGTCTTATACAGCAAGTCCTAAAAACCATGACAATGGTCT
GGGTCATGAATTCCGTCATGCGACAATTCACGGGCCCTCCaagtcccccc
tcctcgccctccgcggTGGACGTGACCGGCGCTGGAGACGCGCGAAGTGG
AACGAATGAGATACTGCCCTGGCGCGGCCCCCTGCGCATGATGTGGCCAG
AGGGCACCCCTATGtTCCTCCGGGTATACTTGACCGAGCACCGGGACTTC
GACCGTCGCCGCGACCACCCCAAGTTCCTaaagagatga
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Synonyms
Publications