rna7822, rna7822 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7822
Unique Name	rna7822
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1036
Alignment location	CM002474.1:52120..54227 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100931g3.4617.mrna
Orig protein id	gnl\|cribi\|Naga_100931g3.4617
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:52120..54227 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100931g3	gene7577	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7822	rna7822-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22871.1	cds7801	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:52120..54227+
coding sequence from alignment at CM002474.1:52120..54227+

mRNA sequence

>rna7822 ID=rna7822|Name=rna7822|organism=Nannochloropsis gaditana|type=mRNA|length=1036bp
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCCTTGGTCAGGAT
GCCTCCTGAAGCCCACTCGGTCGTGCCCTGGTCGCATGAGTGCGTCTGGT
GTGATCCAAGAACGGCGACCCTCACCGGCAGCTTTCCCTCCTCCTCCTCC
GTCTCGAGCCTCCTCCACGGCTGTGTTTCCCTCGGTGCGTCCCTTCTCAC
CCGCCTACTCACCATCTTTTTCCCTTCTTTAGGTTAGCTCGGCCGTTGAT
ATGGTCCTCCTCCCCTACCTCCCCTCCTCCCCCTCCTCCATTGAAGACGC
GCTCACCCTCTGCCGCCGGATCCCTGATGCCTTGCCGCGCCTCTTCGTCG
AGGTGCGCTTCCAAGTCGGGGAGGAGGGGGAGGAGGGCGGGGGGGAGGTA
GCGGCGGAGGCGGGGTGTCATGTCGAGAGTATTCGGGTGGCGGTGGAGGA
CGGAGGAAATCCATGGGCGTCGTGGGTGCCCCTCTCTCCCTTTCTCCCTC
GCTCTGTCGAGGCCTTCCAAAGGCAGTTGGAGGCGATTGGGCGAAAGCTG
CTCGCGGAAAGTCGAGGGAAAGGTGGGAGAAAGACAAAGTGGAGGGTCGG
GAGGGAGCTGAGGAGGAGGGAGGACGAAGAGAACGTGTGGACGGTAGGAA
TGCAGGTAGGGGTGCTGATAGGGATGACCTTGATGGTGGGTGTCTTCTTT
GCGGTAAGGCGGAGAGAGTGGGAGCGGCACTTGTGGCAAAAGCGGTGACG
AGGAAGCAGGGGGGAAAGGAAAGAAGGGGCGGGGGGAGGGAGGGTAGGAG
GGGAGGATGCTCGGATCTGCCGTTCCATTTTGCGGGGAAGAGTGCTCCTT
GGAACTCAGATGCACATATACGTGATACATAGCTATATAACAAAGTGAGG
AAAGACAAAAGGAAGCCGTGAACGCGGACGATTTCCCATGCTGTGCGAGT
TATACGAGGTCGGCACCCAGGGGAGAAGAGCCACAAGGATGTACTCGCCT
GGATGCGCCCTCTTTCTCGTCCCTCCCAGAAAGACA

protein sequence of rna7822

>rna7822-protein ID=rna7822-protein|Name=rna7822|organism=Nannochloropsis gaditana|type=polypeptide|length=338bp
MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIAR
GRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPG
PGPSVWGTVQEAGQAAVPRLPSSSPCFHLRDPTVPSPAALTASPALAQGH
ASRQDAPARRVLVTFSSGRCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQ
VRQWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVTAGEGRKGGGR
EGERKTPTSMCWRTCRCSVSPLPRFPPFPPPRPPPHLPPCLPPPSHPPPP
SRESKATTSLVDAAYLLSSDYDAPFFSLFFRFHLHLDR

mRNA from alignment at CM002474.1:52120..54227+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7822 ID=rna7822|Name=rna7822|organism=Nannochloropsis gaditana|type=mRNA|length=2108bp|location=Sequence derived from alignment at CM002474.1:52120..54227+ (Nannochloropsis gaditana)
CCTATCATTCTACCCGGGGCTTcccggcgtcctccttcccccctttcctc
ccgtacCGACTGACCTTCTCCGGAAAGCATTGCGAGACGAAGgtggaaat
gagggaggactttcctgcccctcggtctccaaggaggagaatgcgCACGG
TGTCTTTCATGCCCCCCTGGTGATGTAGGTAGAGCACACGGGGAGAAGCA
ATTAAGACCGGTCTCCACCCTGGCATCATGTTGTAAGCCGCCTCCGTCGA
AAAAACATACTCCTTTGGCGCATAATTACAATCACATCACACATTCCCTG
GGATTGTGACGGCCAAATGCTGAAAATGTCGTTGCTTCCACCAGGATCGA
GATCGCGGCGGGAATAGCTAGAAGCCCCGAGCCTGCTTCCTTGCCTCTTT
GAACACATCACCGAATGAGTACGCACCGGTCCATAACGCAAAGCACGCGG
GCTCCACGACGCAAAGTACGTGGGGGTTGACCTGTTCGTGCGCGTTTCCT
CAACATGTTGCCGCACCGTGTTCAAGAGAAGGACTCCGTGCATCTACAGG
GCTCGCCACCCCGCTTCAAGAAGCAGTACTAGCAGGAGCGAGCGCTCGAC
TCGATCGATACTCTCAGGTTTCGGTCACACAAATCGACGTGCCTTCACCC
ACAGCCACGTACTATCTCAGCCACATGGCCAGGTAGGACAATGTCTTTCT
TGCGGATACTGGACCATGACCTGGACGACCCGCTGTTCCTTCGTCTCTTC
GACTCTCTTGGCCTGAACTCCCATCAAGAGTAAGTGGAACCAGGGGCTTA
GACGTTCATGGGGGATGGGCCACTTGATTGGAACAAAATTGGAGTACCGA
GGTATAGCGGGCCAAGGTGGTGTTTTGTTGGGGTGTAAGGTAGCTCTGTG
CCTCATTTTTAGCCTTTTAACCTCCTACCACCGTAGCTGGCCCTATTTCC
TATGCCTGTCCTGGGGGAAGCTCAACGTCATCTTTATCTCACTTCATTGC
TTTGTCGTCCCGGCATTCTTTTCCATCTTTTTCATAGAGTCGAGCTCATC
CATGTCCTGAAACGGATCACCACGCCGATGGAGACCTTGATAGCCCGAGG
CCGGAGCAGAGAGGCACTTGCCTTCTTGGAGAAACGACAGCAACAACGAC
AACAATTGCAACGACAACAAAGACAACCGCCACAACCATTagtagaagaa
gaagcacgACTATCGCCACAGACCTGTGTAGCGGCACCCTTTCCCGGGCC
GGGACCGAGTGTGTGGGGCACCGTGCAGGAAGCGGGGCAGGCCGCCGttc
cacgccttccctcctcctcgccctgcttCCACCTCAGAGACCCCACAGTG
CCTTCCCCGGCGGCCCTTACTGCGAGCCCAGCCTTGGCCCAGGGGCATGC
GTCGCGCCAAGACGCACCGGCACGCCGGGTGCTCGTTACTTTTTCCAGTG
GCAGGTGCCAGGCCGCAGGGGCGAAGAGGTTCCTCTATTCTTCGCACAGG
GCGAGCcgggccggggaggacgccTTCGTGGAGGAGATCCAGGAGCAGGT
GCGGCAATGGCGGGActccggggggggaagaggagggagcgagggggaag
agacgtACAGTGTCAGCGTCAATTTCTCCCCGTCGGGCGCACTGAAGAAG
ACGGTGTGGAAAgtgacggcgggggagggaaggaagggaggggggaggga
gggggagaggaagacaccGACTTCGATGTGTTGGCGAACGTGTCGCTGCT
CCGTGTCTCCACTCCCgcgcttcccgccctttcccccccctcgccctcct
ccgcaccttcccccttgtctccctcctccctcccacccgccccctccctc
acgtgAGTCCAAAGCAACAACAAGCTTGGTTGATGCCGCGTACTTGCTTT
CGTCGGATTATGACgccccttttttttctctttttttccggTTCCATCTC
CATCTTGATCGTTGAAGTCCCCCCCTGGAACGGgcgctccttccccttga
TCCCCTCACCAGTCGAGCCTCTGCaccaccctttcttcccttccgtccct
gcctCGTCAGAAACCTACACTAGTACGCTTGCACACAcgatcctcccctc
tcccctcc

Coding sequence (CDS) from alignment at CM002474.1:52120..54227+

>rna7822 ID=rna7822|Name=rna7822|organism=Nannochloropsis gaditana|type=CDS|length=2034bp|location=Sequence derived from alignment at CM002474.1:52120..54227+ (Nannochloropsis gaditana)
ATGTCTTTCTTGCGGATACTGGACCATGACCTGGACGACCCGCTGTTCCT
TCGTCTCTTCGACTCTCTTGGCCTGAACTCCCATCAAGAAGTCGAGCTCA
TCCATGTCCTGAAACGGATCACCACGCCGATGGAGACCTTGATAGCCCGA
GGCCGGAGCAGAGAGGCACTTGCCTTCTTGGAGAAACGACAGCAACAACG
ACAACAATTGCAACGACAACAAAGACAACCGCCACAACCATTagtagaag
aagaagcacgACTATCGCCACAGACCTGTGTAGCGGCACCCTTTCCCGGG
CCGGGACCGAGTGTGTGGGGCACCGTGCAGGAAGCGGGGCAGGCCGCCGt
tccacgccttccctcctcctcgccctgcttCCACCTCAGAGACCCCACAG
TGCCTTCCCCGGCGGCCCTTACTGCGAGCCCAGCCTTGGCCCAGGGGCAT
GCGTCGCGCCAAGACGCACCGGCACGCCGGGTGCTCGTTACTTTTTCCAG
TGGCAGGTGCCAGGCCGCAGGGGCGAAGAGGTTCCTCTATTCTTCGCACA
GGGCGAGCcgggccggggaggacgccTTCGTGGAGGAGATCCAGGAGCAG
GTGCGGCAATGGCGGGActccggggggggaagaggagggagcgaggggga
agagacgtACAGTGTCAGCGTCAATTTCTCCCCGTCGGGCGCACTGAAGA
AGACGGTGTGGAAAgtgacggcgggggagggaaggaagggaggggggagg
gagggggagaggaagacaccGACTTCGATGTGTTGGCGAACGTGTCGCTG
CTCCGTGTCTCCACTCCCgcgcttcccgccctttcccccccctcgccctc
ctccgcaccttcccccttgtctccctcctccctcccacccgccccctccc
tcacgtgAGTCCAAAGCAACAACAAGCTTGGTTGATGCCGCGTACTTGCT
TTCGTCGGATTATGACgccccttttttttctctttttttccggTTCCATC
TCCATCTTGATCGTTGAATGTCTTTCTTGCGGATACTGGACCATGACCTG
GACGACCCGCTGTTCCTTCGTCTCTTCGACTCTCTTGGCCTGAACTCCCA
TCAAGAAGTCGAGCTCATCCATGTCCTGAAACGGATCACCACGCCGATGG
AGACCTTGATAGCCCGAGGCCGGAGCAGAGAGGCACTTGCCTTCTTGGAG
AAACGACAGCAACAACGACAACAATTGCAACGACAACAAAGACAACCGCC
ACAACCATTagtagaagaagaagcacgACTATCGCCACAGACCTGTGTAG
CGGCACCCTTTCCCGGGCCGGGACCGAGTGTGTGGGGCACCGTGCAGGAA
GCGGGGCAGGCCGCCGttccacgccttccctcctcctcgccctgcttCCA
CCTCAGAGACCCCACAGTGCCTTCCCCGGCGGCCCTTACTGCGAGCCCAG
CCTTGGCCCAGGGGCATGCGTCGCGCCAAGACGCACCGGCACGCCGGGTG
CTCGTTACTTTTTCCAGTGGCAGGTGCCAGGCCGCAGGGGCGAAGAGGTT
CCTCTATTCTTCGCACAGGGCGAGCcgggccggggaggacgccTTCGTGG
AGGAGATCCAGGAGCAGGTGCGGCAATGGCGGGActccggggggggaaga
ggagggagcgagggggaagagacgtACAGTGTCAGCGTCAATTTCTCCCC
GTCGGGCGCACTGAAGAAGACGGTGTGGAAAgtgacggcgggggagggaa
ggaagggaggggggagggagggggagaggaagacaccGACTTCGATGTGT
TGGCGAACGTGTCGCTGCTCCGTGTCTCCACTCCCgcgcttcccgccctt
tcccccccctcgccctcctccgcaccttcccccttgtctccctcctccct
cccacccgccccctccctcacgtgAGTCCAAAGCAACAACAAGCTTGGTT
GATGCCGCGTACTTGCTTTCGTCGGATTATGACgccccttttttttctct
ttttttccggTTCCATCTCCATCTTGATCGTTGA

Synonyms

Publications