EWM22871.1, cds7801 (CDS) Nannochloropsis gaditana

Overview
NameEWM22871.1
Unique Namecds7801
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002474.1:52810..52898 +
Alignment locationCM002474.1:53157..54084 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22871.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100931g3.4617.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:52810..52898 +
CM002474.1supercontigCM002474.1:53157..54084 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM22871.1 vs. NCBI_GenBank
Match: gi|585103522|gb|EWM22871.1| (hypothetical protein Naga_100931g3 [Nannochloropsis gaditana])

HSP 1 Score: 679.863 bits (1753), Expect = 0.000e+0
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0 
Query:    1 MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLPSSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSGRCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVRQWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVTAGEGRKGGGREGERKTPTSMCWRTCRCSVSPLPRFPPFPPPRPPPHLPPCLPPPSHPPPPSRESKATTSLVDAAYLLSSDYDAPFFSLFFRFHLHLDR 338
            MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLPSSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSGRCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVRQWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVTAGEGRKGGGREGERKTPTSMCWRTCRCSVSPLPRFPPFPPPRPPPHLPPCLPPPSHPPPPSRESKATTSLVDAAYLLSSDYDAPFFSLFFRFHLHLDR
Sbjct:    1 MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLPSSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSGRCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVRQWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVTAGEGRKGGGREGERKTPTSMCWRTCRCSVSPLPRFPPFPPPRPPPHLPPCLPPPSHPPPPSRESKATTSLVDAAYLLSSDYDAPFFSLFFRFHLHLDR 338
[Close]
BLAST of EWM22871.1 vs. NCBI_GenBank
Match: gi|553187674|ref|XP_005854655.1| (hypothetical protein NGA_0243500, partial [Nannochloropsis gaditana CCMP526] >gi|422294400|gb|EKU21700.1| hypothetical protein NGA_0243500, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 487.649 bits (1254), Expect = 1.578e-172
Identity = 243/245 (99.18%), Postives = 244/245 (99.59%), Query Frame = 0 
Query:    1 MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLPSSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSGRCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVRQWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVTAGEGR 245
            MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLPSSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSGRCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVRQWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVTAG G+
Sbjct:    1 MSFLRILDHDLDDPLFLRLFDSLGLNSHQEVELIHVLKRITTPMETLIARGRSREALAFLEKRQQQRQQLQRQQRQPPQPLVEEEARLSPQTCVAAPFPGPGPSVWGTVQEAGQAAVPRLPSSSPCFHLRDPTVPSPAALTASPALAQGHASRQDAPARRVLVTFSSGRCQAAGAKRFLYSSHRASRAGEDAFVEEIQEQVRQWRDSGGGRGGSEGEETYSVSVNFSPSGALKKTVWKVTAGGGK 245
The following BLAST results are available for this feature:
BLAST of EWM22871.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103522|gb|EWM22871.1|0.000e+0100.00hypothetical protein Naga_100931g3 [Nannochloropsi... [more]
gi|553187674|ref|XP_005854655.1|1.578e-17299.18hypothetical protein NGA_0243500, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7822rna7822Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications