rna7819, rna7819 (mRNA) Nannochloropsis gaditana

Overview
Namerna7819
Unique Namerna7819
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2001
Alignment locationCM002474.1:47370..47819 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103517g1.9486.mrna
Orig protein idgnl|cribi|Naga_103517g1.9486
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:47370..47819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103517g1gene7574Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7819rna7819-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22875.1cds7798Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7819 ID=rna7819|Name=rna7819|organism=Nannochloropsis gaditana|type=mRNA|length=2001bp
AAAACAGTCGACAAAGCAGCTCTTTATTTGCTGCTATGGTGCGTCAAGGT
TGATGTTGAGCTCCGGCCCTGCATGGTCGTCGATCCTATATTTCAAAACC
CATTACAAGGGAAAAAGAAGCCAGACTGTGAACCCCAAATATTTCCACAC
AGGCGATCCTTGGCATCTTAAAGGACCGCGGTCTGTGACGATCGTTCGCC
TTGGCCTCTTTGGTTCGACTTTTCCGTCCTCTTTCTCTTCCTCCTGCTTC
TTGACCCTCTTCATAGAAACCTCTACCTCCCTCCTTCGCCTATAAGGCCA
TTGGAGCAGCCATAACCACGATGCAACAAAGAGAAGAAGCCTCATCTCTG
CCACGAGCTGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGC
CGGTCATAATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTC
AACAGGAAGAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGA
CCGCTTGAACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGA
GAAAGGCTTTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAA
TGCGGCGCATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTC
GCGTATCTGGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGG
AGAAGAAAAAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGA
AAGAATGGGAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTA
CTGACTGTTGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTT
CGTGGAGGAGTTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAAT
CAACTTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGT
CGCCTCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGC
CTTCTTGGATGCCAGCTACCGAGACATGGACGACTTCTGCGTCCGGGAAG
TGGAGCCGACGGGCAAGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTC
CGGGCCTTGGGCGTGTGCGTCCGCATCGAATATCTGGACGGGAGAGCGTT
GCCGCCAGGGGGGCAATTGCCCTGCCACGTTTTGCCTGACGAATGGGACG
GTGGAAAGGAGGAGGGGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCAC
TACGATCTGCTGGTCAAGTGAGCTGGGGGGGTCGCTGTGGAGGCGCAGAA
GGGTGTGTTTGGAAAAGAAGTGGTGAAAGGGGGCGAGCAAATATGCAGGC
AGTCACAGGTAGCGAAAGAACAACGACGCCTGTTGGTCGGGAGTATCGAT
GCAAGGTTTTGTGACAGCAGCTCCATGTACAGGTCAGACGCGGAGGGCAG
ACAGTGCATGGTTTGGCGGGATTGGGACTTCCATCTATCCGGGAAAGTCC
CCGAAGCCATGCCATCCGAGGGATGGTGCGCTAGTCTCTTGGCAGATAGT
GTGCCCCAGGGGAATGAAAATAGTAGAATGTCATTGTGGTGGCGGGCCCC
ATTTCCTTTTCCTGTTTAGCCAAGTACCCTTTCAATCTCGTATCCGACTT
TGTTCATATTGCTCCAGCGATTGCGGATTTCAATGAAGACAAAGTTCCGA
TGAATGTTATTTTATATTGTTGTGAAGGTGATCTCAGACTTTGCTTATAA
AATGTATACAAGTGCACCTGGTAATCAAGCATCCAGCTAACTCGGATCGT
TGTGCGTGTAAGTTGGCTGCTACTACGAGTACAAGAGAGCCGCGCGGTCA
TTGACGCGATCGAAGGCATCATTTGCAGGTATTTCAAGAAACATCGCGGG
GAGTGGATGTGAGTTGGTGATATGTCAATGTAAAATTATTTAAAACCAGT
ACACTTGTGCACGCGCGAATCTGTAATACTTTCGTAGTTTCTGGATTCAT
T
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protein sequence of rna7819

>rna7819-protein ID=rna7819-protein|Name=rna7819|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
PSLPPSLPPPLPPSSTGPCGQSLEIRASPGIGLDREEHQASHMRLLPYGT
LPSSPSSPFSPEAPLTAVSAMPLPPPSLLLLAMKPRRRHSPSCLVRQLGP
LLPVVLLPPLSLHRCLPLRSSTVLQGT
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mRNA from alignment at CM002474.1:47370..47819+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7819 ID=rna7819|Name=rna7819|organism=Nannochloropsis gaditana|type=mRNA|length=450bp|location=Sequence derived from alignment at CM002474.1:47370..47819+ (Nannochloropsis gaditana)
ccctccctccctccctccctccctccccccctccccccctcctccacagg
gCCATGCGGACAATCACTGGAAATACGTGCCTCACCTGGTATCGGCCTTG
ACCGGGAAGAGCATCAAGCAAGTCACATGCGGCTCCTACCATACGGtacg
cttccctcctctccttcctctcccttttccccggaAGCCCCCCTCACTGC
CGTCTCGGcaatgcccctccccccaccatcGCTTTTACTTCTCGCGATGA
AACCTCGGCGTCGtcattctccctcctgcttggtGCGCCAACTCGgaccc
cttctccccgttgtcctcctccctcccctttctctccatcgctgcctccc
tttgcGCTCGAGCACTGTCTTGCAAGGAACCTGACGGCCGCGCCATAAGG
CCTGCGTGCCCTCAGCTGTCCCTGTCTGGGAATTCTAGGACCCTCCTGtc
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Coding sequence (CDS) from alignment at CM002474.1:47370..47819+

>rna7819 ID=rna7819|Name=rna7819|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at CM002474.1:47370..47819+ (Nannochloropsis gaditana)
ccctccctccctccctccctccctccccccctccccccctcctccacagg
gCCATGCGGACAATCACTGGAAATACGTGCCTCACCTGGTATCGGCCTTG
ACCGGGAAGAGCATCAAGCAAGTCACATGCGGCTCCTACCATACGGtacg
cttccctcctctccttcctctcccttttccccggaAGCCCCCCTCACTGC
CGTCTCGGcaatgcccctccccccaccatcGCTTTTACTTCTCGCGATGA
AACCTCGGCGTCGtcattctccctcctgcttggtGCGCCAACTCGgaccc
cttctccccgttgtcctcctccctcccctttctctccatcgctgcctccc
tttgcGCTCGAGCACTGTCTTGCAAGGAACCTGA
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Synonyms
Publications