|
|
Properties
| Property Name | Value |
|---|
| Product | ubiquitin thioesterase otub1 |
| Orig transcript id | gnl|cribi|Naga_100676g3.10431.mrna |
| Orig protein id | gnl|cribi|Naga_100676g3.10431 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002474.1 | supercontig | CM002474.1:43498..46419 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7817 ID=rna7817|Name=rna7817|organism=Nannochloropsis gaditana|type=mRNA|length=1434bp
CAGACAACAGACGAGGGTTGAGTGTCCACATCTTCCGCGCGCATTCATGC
TCAGCAGGCTGTGTTAGTCATGAATATGAAGCCATCTCTTTCCCTCTTGT
CTTTCTTCTTAAACCTCCTGATGATCTTACTTCCCTCCTTCCCTCTAACC
TATCGCTTCCAGACCGGTACACACTCGACAGAGTCCCTGAGGAAGCGTGA
AAAGATGGCGGGACGTGGACGCGGCAGGGGTATGACGTTGCCAGCGTAAG
TACATAGGGCTTGGCCTTCCTTTTTTGTCGGCCTCACTCACGACACTCGA
CCTCTCTCATCTGCCCCTCCATTTCGTCGCTGCCGAACTGATCTGTCCGA
GGACGGGGAAATTCACGTGTCACCCGTCCTTCGATGATTTTAAGAAAGTG
AAGATGTGAAATGTAGATGCCTAGAATGCAATGCACTGACGCGTATTTTA
AAACTTCAGGTGGATGACTAAAGAAGGTGGGCCGACCCAGACTGCGGAGG
CGCGCAGCAGCAGCAATGGCGACCACAGTGGCAGCAATACAAATCCTCTC
GGGGGACTCCAAGACCATGTCTCCACTACGAATGTGCCCCAGGGAGGCCG
ACGGTCCAGATGGGAAGCTGATCAGCCTTCCCAGGCTGCCCTTCCTACAT
CGGCTCCCGCCCAACATTCCAGTATCAAACAAGCACCGACGCCCCCCCCA
GCGCGAGCAGCCTCCCCTTCTCCTGCCAATGCCAATCCTACGACCATCAG
CGCGCCGCCAGTGCTGGGAGCTGCACCGTCCTCAACCACACCGGCCTCGG
GCGAAGGCACCGCTTTGGCATCTGCGGCCTATGGGAGCTTATCCACGTCT
GGAACCAATGCTCCCACCGCCAGCACGGCGGGCTATCCGCAAATGCACAT
GCAGCATCAGCAGGCCTACGGCAACTGGCAACATCCCCTCCAGCACCCTC
AGGGTCAACAAGACTACTACCACCAGTATTACCAGCAGCAGCAAATGCAG
CAGCACCAGCAGTACTATGCCCAGGCGCAACAAGCGGCTGCCTACGCCGC
TGCCATGCCTCCTGCTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCACCGG
TACCTCCTGAAATCGCGGACAATGTGGAGGAGGGCTATCAACCCGTCTAC
GACCCCAAGACCCAGTACTGGTATTTTTGGAACGCGGCGTCCAATCAGGT
CACGTGGGAGAAGCCTTTGAAAGACAAGAGCAAGGCATTTGTGCCCCCCC
CGCCACCGGGATCGCCACCCAAATGAGAAAGGAGGGGAGGAGGGGAAACG
GAAAGGAAGAATGGGGTAGGGCGCCCGGGGGAAGGATGGTAACATTCCGG
CACGACAAGGACATGAACTGGTGCCAATCTTGTGGTTGTTTCTTTTCATT
CTTACTTCGTGCCACAATGCCAAACACATCCCGG back to topprotein sequence of rna7817 >rna7817-protein ID=rna7817-protein|Name=rna7817|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MQQREEASSLPRAEDVHENGLSQSQAAGHNHQVEEDRDLLTIAQQEEIDS
QIAASQPLVGPLEPPSMLLQAYKDNPEKGFVEGVEDLARRYARMRRIRRD
GNCFYRAFLFAYLAGLVEEGIEDGRKGEEKEGGGGKGRKRGRKKEWERFS
QTVKDSKAWLLTVGYEEVAIDIFWEVFVEELEALPHKSLSDLESTFNEPH
GVASYMVWYCRLLTSGYLKKHKEEYEAFLDASYRDMDDFCVREVEPTGKE
CEQVQIMALVRALGVCVRIEYLDGRALPPGGQLPCHVLPDEWDGGKEEGV
PVTLLYRPGHYDLLVK back to topmRNA from alignment at CM002474.1:43498..46419- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7817 ID=rna7817|Name=rna7817|organism=Nannochloropsis gaditana|type=mRNA|length=2922bp|location=Sequence derived from alignment at CM002474.1:43498..46419- (Nannochloropsis gaditana)
GGCGCTTTGACGTGGGGGTGTTCATGCGCCTATCCAATTGCCGATCTTAG
AGACTGCCAAAACGACAGAAGTACTCGCAACACTTCTCAATGTACATGGC
TGGAAAGTGCATGGCGAAGTCTTCTGTCTAAGCTTGTCATGGTCTTCCAA
AACAGTCGACAAAGCAGCTCTTTATTTGCTGCTATGGTGCGTCAAGGTTG
ATGTTGAGCTCCGGCCCTGCATGGTCGTCGATCCTATATTTCAAAACCCA
TTACAAGGGAAAAAGAAGCCAGACTGTGAACCCCAAATATTTCCACACAG
GCGATCCTTGGCATCTTAAAGGACCGCGGTCTGTGACGATCGTTCGCCTT
GGCCTCTTTGGTTCGACTTTTCCGTCCTCTTTCTCTTCCTCCTGCTTCTT
GACCCTCTTCATAGAAACCTCTACCTCCCTCCTTCGCCTATAAGGCCATT
GGAGCAGCCATAACCACGATGCAACAAAGAGAAGAAGCCTCATCTCTGCC
ACGAGCTGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCG
GTCATAATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAA
CAGGAAGAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACC
GCTTGAACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGA
AAGGCTTTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATG
CGGCGCATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGC
GTATCTGGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAG
AAGAAAAAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAA
GAATGGGAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACT
GACTGTTGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCG
TGGAGGAGGTACGTGGCAAGGGAGGAAAGGATGGGAATGCCCCAATGGAA
CAGGAAGAGGGCTTGTGCGTGGGCTGTTGCAGGTGGTACTTTTCCCCTCG
TTTCCGCCCTTATTCCTCCCCCTTAACCCCATTAAACAGTTGGAGGCACT
CCCCCATAAAAGCCTGTCGGATTTAGAATCAACTTTCAACGAGCCCCACG
GCGTGGCCTCCTACATGGTCTGGTACTGTCGCCTCCTGACTTCCGGGTAT
TTGAAGAAGCACAAGGAGGAGTACGAGGCCTTCTTGGATGCCAGGTAAGA
AGCATAGAGGCGAGGGAGGGAGTTTTATTATAAAAAAACTGGTGTGGCGG
ATCCCTCACAAAGTCTTATGATCTGCGTCTTTGTGTGGGACCGCGCCCTG
AGTCCTCCCCTTCAGTCCCGTCCTCGCTCTGTGCTGAGGGTGCGACACAG
CGGGTGGGGCCACGAGTGGACTCCCTTTCCGGCCCGGTCTTTGCATGCCT
GGAGCCTGCCATGTGTACATGCCCTTCCTTTTTGCTTCCCACACTCTGCT
GCCACCGACACGCTTATGTCGCCCCTCCCAGGGGGGGGCTACCGTCTTGC
AGTCCGGCCCCGGCACTGATCTAGACCGCTTGGTCCATCTCTTTCATACT
TTTCCCAACATCCCTGGGGCGCACTCACAGCTACCGAGACATGGACGACT
TCTGCGTCCGGGAAGTGGAGCCGACGGGCAAGGAATGCGAGCAGGTGCAG
ATCATGGCCTTGGTCCGGGCCTTGGGCGTGTGCGTCCGCATCGAATATCT
GGACGGGAGAGCGTTGCCGCCAGGGGGGCAATTGCCCTGCCACGTTTTGC
CTGACGAATGGGACGGTGGAAAGGAGGAGGGGGTGCCTGTGACGTTGCTG
TACCGGCCCGGGCACTACGATCTGCTGGTCAAGTGAGCTGGGGGGGTCGC
TGTGGAGGCGCAGAAGGGTGTGTTTGGAAAAGAAGTGGTGAAAGGGGGCG
AGCAAATATGCAGGCAGTCACAGGTAGCGAAAGAACAACGACGCCTGTTG
GTCGGGAGTATCGATGCAAGGTTTTGTGACAGCAGCTCCATGTACAGGTC
AGACGCGGAGGGCAGACAGTGCATGGTTTGGCGGGATTGGGACTTCCATC
TATCCGGGAAAGTCCCCGAAGCCATGCCATCCGAGGGATGGTGCGCTAGT
CTCTTGGCAGATAGTGTGCCCCAGGGGAATGAAAATAGTAGAATGTCATT
GTGGTGGCGGGCCCCATTTCCTTTTCCTGTTTAGCCAAGTACCCTTTCAA
TCTCGTATCCGACTTTGTTCATATTGCTCCAGCGATTGCGGATTTCAATG
AAGACAAAGTTCCGATGAATGTTATTTTATATTGTTGTGAAGGTGATCTC
AGACTTTGCTTATAAAATGTATACAAGTGCACCTGGTAATCAAGCATCCA
GCTAACTCGGATCGTTGTGCGTGTAAGTTGGCTGCTACTACGAGTACAAG
AGAGCCGCGCGGTCATTGACGCGATCGAAGGCATCATTTGCAGGTATTTC
AAGGTAATGGGAGATGCTTCCGTCCATCACAGCTGGTATGGGGGCAGGTT
AGAGTGAACCTGAGAAGGGACGGCCCATGGGGAGGATCTCATTTGTTCCC
AAAAGCGGTACCTTCGAGCGCAACTGTGGGATATGATTGCTGTATGCACC
CACTTAATGGAATGGGCTATGAGAAGTATGATACAGGGAAAAGCCATTGA
CAATTGATGACATTTTAAAACAAATAAAGGTCATCAACCATTGACCTCTC
TTACGACAGAAACATCGCGGGGAGTGGATGTGAGTTGGTGATATGTCAAT
GTAAAATTATTTAAAACCAGTACACTTGTGCACGCGCGAATCTGTAATAC
TTTCGTAGTTTCTGGATTCATT back to topCoding sequence (CDS) from alignment at CM002474.1:43498..46419- >rna7817 ID=rna7817|Name=rna7817|organism=Nannochloropsis gaditana|type=CDS|length=2853bp|location=Sequence derived from alignment at CM002474.1:43498..46419- (Nannochloropsis gaditana)
CTACCGAGACATGGACGACTTCTGCGTCCGGGAAGTGGAGCCGACGGGCA
AGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTCCGGGCCTTGGGCGTG
TGCGTCCGCATCGAATATCTGGACGGGAGAGCGTTGCCGCCAGGGGGGCA
ATTGCCCTGCCACGTTTTGCCTGACGAATGGGACGGTGGAAAGGAGGAGG
GGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCACTACGATCTGCTGGTC
AAGTGATTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAATCAAC
TTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGTCGCC
TCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGCCTTC
TTGGATGCCAGATGCAACAAAGAGAAGAAGCCTCATCTCTGCCACGAGCT
GAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCGGTCATAA
TCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAACAGGAAG
AAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACCGCTTGAA
CCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGAAAGGCTT
TGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATGCGGCGCA
TCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGCGTATCTG
GCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAGAAGAAAA
AGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAAGAATGGG
AGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACTGACTGTT
GGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCGTGGAGGA
GCTACCGAGACATGGACGACTTCTGCGTCCGGGAAGTGGAGCCGACGGGC
AAGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTCCGGGCCTTGGGCGT
GTGCGTCCGCATCGAATATCTGGACGGGAGAGCGTTGCCGCCAGGGGGGC
AATTGCCCTGCCACGTTTTGCCTGACGAATGGGACGGTGGAAAGGAGGAG
GGGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCACTACGATCTGCTGGT
CAAGTGATTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAATCAA
CTTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGTCGC
CTCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGCCTT
CTTGGATGCCAGATGCAACAAAGAGAAGAAGCCTCATCTCTGCCACGAGC
TGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCGGTCATA
ATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAACAGGAA
GAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACCGCTTGA
ACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGAAAGGCT
TTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATGCGGCGC
ATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGCGTATCT
GGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAGAAGAAA
AAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAAGAATGG
GAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACTGACTGT
TGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCGTGGAGG
AGCTACCGAGACATGGACGACTTCTGCGTCCGGGAAGTGGAGCCGACGGG
CAAGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTCCGGGCCTTGGGCG
TGTGCGTCCGCATCGAATATCTGGACGGGAGAGCGTTGCCGCCAGGGGGG
CAATTGCCCTGCCACGTTTTGCCTGACGAATGGGACGGTGGAAAGGAGGA
GGGGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCACTACGATCTGCTGG
TCAAGTGATTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAATCA
ACTTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGTCG
CCTCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGCCT
TCTTGGATGCCAGATGCAACAAAGAGAAGAAGCCTCATCTCTGCCACGAG
CTGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCGGTCAT
AATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAACAGGA
AGAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACCGCTTG
AACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGAAAGGC
TTTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATGCGGCG
CATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGCGTATC
TGGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAGAAGAA
AAAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAAGAATG
GGAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACTGACTG
TTGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCGTGGAG
GAG back to top
|