rna7802, rna7802 (mRNA) Nannochloropsis gaditana

Overview
Namerna7802
Unique Namerna7802
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1798
Alignment locationCM002473.1:429497..429967 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100320g4.4070.mrna
Orig protein idgnl|cribi|Naga_100320g4.4070
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:429497..429967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100320g4gene7559Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7802rna7802-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22894.1cds7781Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7802 ID=rna7802|Name=rna7802|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp
GAATATGAGAATGTTGCCGCACACCAAGCCATACCTGCCTCACCGTCTTA
ACTTTTCCTCGCATCTTAGATCTCACAGACCTTACTGCGTGCCTCGGGCT
CGTTGGTCCTGTCTCATGGCAGTCTCGTCTTCACCTCAAAAGGGGCCGTC
AGACCAGCCTGATACCGGCCACAACGCGGGGAGCGGCCTCAGCCATGGGG
AGAATTCTGCTGATGTTGAGAATGGGCATGGCGCTGACGCAGATGCTCAC
CGAGAGTACCCTGTGAAACGCTTTGTCTACGTCATTGCCAATATCACTGC
GTTGTCGGGCCTTCTCTTTGGCTACGACATTGGGGGCTCGGGAGGCACCT
TCGAAATGGCGGGCTTCAGACGGTTCTTCGGGTGGCCGGCCCTGGGCGAC
AAGTCCGATCCGGCCTGGGTGGCCAACCAGCAAGGCTGGATCACCGCCAT
GTTCTCCCTGGGCTGCATCGTCGGCTCGCTCCCCTCGGGCTTCTTGACCG
ACTTCATGGGTCGAAAACGCTGCATCATATTCCTGTCCTTCGTCTTCACC
GTCGGCGCCGTCATCCAGCTTGTCCCCAGCGGCTACCAAATGCTTCTGGC
CGGCCGTTTCATCTCCGGCGTCGGTGTGGGCGGACTGTCCATGGCAGCTA
CTCTCTACCAGTCAGAGACCGCGCCCCCCAAGGTTCGAGGTCTGGTGGTC
TCGATCCAGCAGCTCTCCATCACGGCCGGCATCCTACTGGCCGGGGGCCT
GAACGTGGGCTTGCAGCACTGGGACGAAGGCTGGCGCATTTCCTACGGTG
GCAAGGGCTTCTTCTCCCTCCTTCTCATGCTCCTGATGATTTGTCTCCCA
GAGTCGCCCCGCTGGCTGGTGGCGCAAGGTAAGAGTGAGGCGGCCAAGGC
TTCCTTAGGTCGGATCCGACAAGAGGAGGAGGTGGAAGGCGAGCTCGCAG
GCATCGAGGAGGCTGTGGAGGCGGAGGCACAAATGGAAAAGGGCGCCTGG
AAGGACTTGGTCTCGCCCGTGGACTTTATGTTGTACAGGACCATGCTGGG
CTTCGGCGTGCAGTTGTTGCAGCAGTTCTCCGGCATCAATGCGGTCATGT
ACTTCGCCCCCGTTATCTTCAAGAAGTTCCTGGCCTCTGAGATGGCTATC
CTCGCCAACTTGGCCGTGGCCCTCGTCAACTATCTCAGCACCTTCCTTGC
CCTCTACCTGGTGGACCGGGCGGGGCGCCGGCTTCTTCTTGTCTGCGGAG
GGCTGGGGATGGCTTTATTCACGGCCCTTTTCGCGCTCTTCACCTCCGCT
GCCTTTGACTACCAGAACGATAAGCGCCTCGCTGGCGTCATCATTGCTTG
TACAGCTCTGTACGTCATGAACTTCGCCTACTCGTGGGGGCCACTAGCAT
GGGTCGTCTCGGCAGAGATCTTTCCCCAGCGCCTTCGGGGCAAATGCATG
ACGATCACCACGCTTGCCAACTGGCTGACAAATTTCTGCATCGCAAAAGC
GGTGCCTGTCATGATCCTCCCGGAAAACCTCAATTTGTGGGGCACTTTTC
TCTTCTTCGCCTTCTGCTGCTTCTGCATGGCCACATTCGTGTTGCTTCTA
CTCCCTGAAACAAAAGGCGTCTCCCTCGAGGATATGAAGGCGCTCTTCCA
AGTATGGATTACTGATACGCCATTAGCAGAGAAGTTGCAGTTGATTTCGA
GACGAGCACAAGTTCGGGCGAGAAGAAAAGATAGATCTGAGAGCGGGCAG
GATGGTAATCGGGAAAAGGACGTAGGTGCAGGAGGGGCTCGGAATTGA
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protein sequence of rna7802

>rna7802-protein ID=rna7802-protein|Name=rna7802|organism=Nannochloropsis gaditana|type=polypeptide|length=156bp
MTYWGIITPGKDSKRSGLPPPSPRRGDDLPIVYSPKRGQPSTHDNLIGGE
MTSMNRLCSLFQRSDSNLSEASDVQTLRREKKWLHVVLRKFESSFREQYG
RRILTAKDIAPVEKQYERYIHIKSKLATLASMEKSEEISEQKETIKSRNI
LNTSHE
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mRNA from alignment at CM002473.1:429497..429967+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7802 ID=rna7802|Name=rna7802|organism=Nannochloropsis gaditana|type=mRNA|length=471bp|location=Sequence derived from alignment at CM002473.1:429497..429967+ (Nannochloropsis gaditana)
ATGACCTACTGGGGGATAATAACGCCCGGAAAGGACTCTAAGCGCAGcgg
cttgcctcctccaagccctcggAGAGGAGACGATCTTCCCATTGTCTACA
GTCCGAAAAGAGGACAACCGAGCACACATGACAATCTGATAGGGGGAGAG
ATGACCTCAATGAACCGTCTTTGCAGTCTTTTTCAGAGGTCAGACTCGAA
TTTATCTGAGGCCTCTGACGTGCAAACTTTGCGGAGAGAAAAAAAGTGGC
TTCACGTAGTCCTACGGAAGTTCGAATCATCTTTTCGCGAACAATACGGC
AGACGCATTCTCACTGCGAAAGACATTGCGCCTGTTGAAAAGCAGTATGA
GCGTTACATACACATTAAAAGCAAGCTGGCGACACTCGCATCGATGGAAA
AGAGCGAGGAAATCAGCGAACAGAAGGAAACGATAAAGTCTCGGAATATT
CTGAATACTTCCCACGAGTAA
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Coding sequence (CDS) from alignment at CM002473.1:429497..429967+

>rna7802 ID=rna7802|Name=rna7802|organism=Nannochloropsis gaditana|type=CDS|length=471bp|location=Sequence derived from alignment at CM002473.1:429497..429967+ (Nannochloropsis gaditana)
ATGACCTACTGGGGGATAATAACGCCCGGAAAGGACTCTAAGCGCAGcgg
cttgcctcctccaagccctcggAGAGGAGACGATCTTCCCATTGTCTACA
GTCCGAAAAGAGGACAACCGAGCACACATGACAATCTGATAGGGGGAGAG
ATGACCTCAATGAACCGTCTTTGCAGTCTTTTTCAGAGGTCAGACTCGAA
TTTATCTGAGGCCTCTGACGTGCAAACTTTGCGGAGAGAAAAAAAGTGGC
TTCACGTAGTCCTACGGAAGTTCGAATCATCTTTTCGCGAACAATACGGC
AGACGCATTCTCACTGCGAAAGACATTGCGCCTGTTGAAAAGCAGTATGA
GCGTTACATACACATTAAAAGCAAGCTGGCGACACTCGCATCGATGGAAA
AGAGCGAGGAAATCAGCGAACAGAAGGAAACGATAAAGTCTCGGAATATT
CTGAATACTTCCCACGAGTAA
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Synonyms
Publications