rna7798, rna7798 (mRNA) Nannochloropsis gaditana

Overview
Namerna7798
Unique Namerna7798
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length372
Alignment locationCM002473.1:417922..419454 -

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Properties
Property NameValue
ProductMajor facilitator superfamily domain, general substrate transporter
Orig transcript idgnl|cribi|Naga_101830g1.10412.mrna
Orig protein idgnl|cribi|Naga_101830g1.10412
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:417922..419454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101830g1gene7555Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7798rna7798-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22896.1cds7777Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7798 ID=rna7798|Name=rna7798|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
ATGCGTGAATATACGACAGACTTTGCCCCTTGGTATCTCATGATGTCCTC
TAATATTTCCAACGGTGGCGGACTGTACGCCTCAGTCGCCTTCGGCGGTG
TCGTAGCAATCCTCGCTTGGATGATGTTCTTTTTATCTGGGAAAGAATTA
AATGATATATCGACGTGGAGGATAGTGAAGCTTCTGACAGGGGGGGTGGA
CATGAGGGCAAGGCGCAGAGCCACGCAGCATTTCCGTGTGACTAGATGCA
CATGGATTGAGGCTTCTACGAATGATGAGACGTGTTACCGGAAATATCAC
CTCTCCATCCTGGACAAGATGCTGTGCCCCGTCACCATCATCAACATGCA
CTATTTTTACGAGGTTTCCTAA
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protein sequence of rna7798

>rna7798-protein ID=rna7798-protein|Name=rna7798|organism=Nannochloropsis gaditana|type=polypeptide|length=326bp
MLIFSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNI
LLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLP
ESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEG
GREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEK
PPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFT
LEGGEDDALFDYPALLYAAASEVRRGQGGRECGLCSPLGRLGGASRGDRS
PLGGERTVTAMTGALRSIAPRHRLVF
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mRNA from alignment at CM002473.1:417922..419454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7798 ID=rna7798|Name=rna7798|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp|location=Sequence derived from alignment at CM002473.1:417922..419454- (Nannochloropsis gaditana)
TTCCTTTCCCCCTCGCATCCTATTGCCCCCTTTCCCGACCTCCTACGCTT
CCTCTCTCCTGCCTTTGCGTCTTCCTCCCCTTGTCTCCACCTGTCCCCCT
CGCCTCTTTGGAGAAGCCCTGCGCACTCCACGCCTCCTCACGTCCCTTCC
CCCTGCCCCTCCCACCCTCCCTCCGCCCTCCCTCCCTCCAGGCCTACTTT
GCCTCGTGCTTGGTAATGCTCATATTTTCCATTCTAAGCGCCATCTCCCC
CAACTTCGCCTTCCTCCTGGTCATGCGCTGCATCGTCGGCTTCGGCATCG
GGGGCTTGGCCGTGCCTTTCGACTTGCTCTGCGAGTCCACGCCCACGGAG
TTCCGAGGTGAGGGAGGCAGTGAGGGAGGGAGGGCAACGACAACAATTTC
TCCGTGCGCTCTGTTCTACCCCTCGGAGCCAACCTCGTTCATGCCTTTGT
TTCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCCCTCCTCCCAGGCAACAT
CCTCCTCCTCATGCAGATGTTCTGGGTGCTGGGCTCCGTCACCGTCGTAG
GGATGGCCTGGGGGGTCCTCACTGAGCATGGATGGCGTTACCTGACGCGT
GCGTTCCCGCCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCGCCCTCCGCT
TTCCATGCGCCGGTCGTGCTTTTCCATATCATGCCCGCCCTCTTTCCCCT
CTTACTCGTTCCTCCCATTGCGTCGCCTGTGCCCCGCTCTCATGTCCCTC
TCCTTGTCCCGCCCTCCTTCCCTCCCATAGTCCTGGCCACCCTCCCCCTC
CTGATCACATCCTTCGCTTGCCTCCTGCTGCCCGAGTCCTCCCGCTGGCT
CTTGGAGGAGGGCCGCACCGAGGACGCGTGGAAAGTCCTGATCAAGGCGG
CGCAATGGAACGGGATCAAAGACCTCCGGTCTCACCTTTTTGATCTCCGG
TGGGACCATGCCGCCTCCCTCGAGGCGGAGGGCGGAAGGGAAGGCGGGAG
GGAGGGCGGGAGGGAAGGCGGGAGGGAGGGCGGGGCAGAGGACGAGGCGG
CGCGACAAGTCCAGCCAGCCTGCCCCTTGCTCGCCCACCACCACCACCGC
CTCTCCGTCTCGGAGGGGGCGCCCACCGAGAAGCCCCCCTCAGCCTTCGC
CGCTTTCTTCAAGACCCTACCCTTGCTCTTGGTCCCAGGCCTGCGCGCCA
CCACCCTCTGGCTCTGGCTGATCTGGTTCTCCTTCGGCCTTGCCTACTAC
GGGATTATCATCCTCTGCGCCTCCCTCTTCACCCTGGAGGGGGGGGAGGA
CGACGCCCTCTTTGACTACCCGGCTTTGCTCTACGCGGCGGCCTCAGAGG
TGAGGCGAGGGCAGGGTGGGAGGGAGTGCGGACTGTGCTCCCCGCTAGGA
AGACTCGGGGGGGCGAGCAGGGGAGATAGATCTCCATTGGGGGGGGAAAG
GACGGTGACCGCAATGACTGGCGCTCTGCGATCCATTGCCCCTCGGCATC
GGCTTGTCTTTTGAGAGACTTTTTCCACATCTA
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Coding sequence (CDS) from alignment at CM002473.1:417922..419454-

>rna7798 ID=rna7798|Name=rna7798|organism=Nannochloropsis gaditana|type=CDS|length=2943bp|location=Sequence derived from alignment at CM002473.1:417922..419454- (Nannochloropsis gaditana)
TCCTGGCCACCCTCCCCCTCCTGATCACATCCTTCGCTTGCCTCCTGCTG
CCCGAGTCCTCCCGCTGGCTCTTGGAGGAGGGCCGCACCGAGGACGCGTG
GAAAGTCCTGATCAAGGCGGCGCAATGGAACGGGATCAAAGACCTCCGGT
CTCACCTTTTTGATCTCCGGTGGGACCATGCCGCCTCCCTCGAGGCGGAG
GGCGGAAGGGAAGGCGGGAGGGAGGGCGGGAGGGAAGGCGGGAGGGAGGG
CGGGGCAGAGGACGAGGCGGCGCGACAAGTCCAGCCAGCCTGCCCCTTGC
TCGCCCACCACCACCACCGCCTCTCCGTCTCGGAGGGGGCGCCCACCGAG
AAGCCCCCCTCAGCCTTCGCCGCTTTCTTCAAGACCCTACCCTTGCTCTT
GGTCCCAGGCCTGCGCGCCACCACCCTCTGGCTCTGGCTGATCTGGTTCT
CCTTCGGCCTTGCCTACTACGGGATTATCATCCTCTGCGCCTCCCTCTTC
ACCCTGGAGGGGGGGGAGGACGACGCCCTCTTTGACTACCCGGCTTTGCT
CTACGCGGCGGCCTCAGAGGTGAGGCGAGGGCAGGGTGGGAGGGAGTGCG
GACTGTGCTCCCCGCTAGGAAGACTCGGGGGGGCGAGCAGGGGAGATAGA
TCTCCATTGGGGGGGGAAAGGACGGTGACCGCAATGACTGGCGCTCTGCG
ATCCATTGCCCCTCGGCATCGGCTTGTCTTTTGAGCAACATCCTCCTCCT
CATGCAGATGTTCTGGGTGCTGGGCTCCGTCACCGTCGTAGGGATGGCCT
GGGGGGTCCTCACTGAGCATGGATGGCGTTACCTGACGCATGCTCATATT
TTCCATTCTAAGCGCCATCTCCCCCAACTTCGCCTTCCTCCTGGTCATGC
GCTGCATCGTCGGCTTCGGCATCGGGGGCTTGGCCGTGCCTTTCGACTTG
CTCTGCGAGTCCACGCCCACGGAGTTCCGAGTCCTGGCCACCCTCCCCCT
CCTGATCACATCCTTCGCTTGCCTCCTGCTGCCCGAGTCCTCCCGCTGGC
TCTTGGAGGAGGGCCGCACCGAGGACGCGTGGAAAGTCCTGATCAAGGCG
GCGCAATGGAACGGGATCAAAGACCTCCGGTCTCACCTTTTTGATCTCCG
GTGGGACCATGCCGCCTCCCTCGAGGCGGAGGGCGGAAGGGAAGGCGGGA
GGGAGGGCGGGAGGGAAGGCGGGAGGGAGGGCGGGGCAGAGGACGAGGCG
GCGCGACAAGTCCAGCCAGCCTGCCCCTTGCTCGCCCACCACCACCACCG
CCTCTCCGTCTCGGAGGGGGCGCCCACCGAGAAGCCCCCCTCAGCCTTCG
CCGCTTTCTTCAAGACCCTACCCTTGCTCTTGGTCCCAGGCCTGCGCGCC
ACCACCCTCTGGCTCTGGCTGATCTGGTTCTCCTTCGGCCTTGCCTACTA
CGGGATTATCATCCTCTGCGCCTCCCTCTTCACCCTGGAGGGGGGGGAGG
ACGACGCCCTCTTTGACTACCCGGCTTTGCTCTACGCGGCGGCCTCAGAG
GTGAGGCGAGGGCAGGGTGGGAGGGAGTGCGGACTGTGCTCCCCGCTAGG
AAGACTCGGGGGGGCGAGCAGGGGAGATAGATCTCCATTGGGGGGGGAAA
GGACGGTGACCGCAATGACTGGCGCTCTGCGATCCATTGCCCCTCGGCAT
CGGCTTGTCTTTTGAGCAACATCCTCCTCCTCATGCAGATGTTCTGGGTG
CTGGGCTCCGTCACCGTCGTAGGGATGGCCTGGGGGGTCCTCACTGAGCA
TGGATGGCGTTACCTGACGCATGCTCATATTTTCCATTCTAAGCGCCATC
TCCCCCAACTTCGCCTTCCTCCTGGTCATGCGCTGCATCGTCGGCTTCGG
CATCGGGGGCTTGGCCGTGCCTTTCGACTTGCTCTGCGAGTCCACGCCCA
CGGAGTTCCGAGTCCTGGCCACCCTCCCCCTCCTGATCACATCCTTCGCT
TGCCTCCTGCTGCCCGAGTCCTCCCGCTGGCTCTTGGAGGAGGGCCGCAC
CGAGGACGCGTGGAAAGTCCTGATCAAGGCGGCGCAATGGAACGGGATCA
AAGACCTCCGGTCTCACCTTTTTGATCTCCGGTGGGACCATGCCGCCTCC
CTCGAGGCGGAGGGCGGAAGGGAAGGCGGGAGGGAGGGCGGGAGGGAAGG
CGGGAGGGAGGGCGGGGCAGAGGACGAGGCGGCGCGACAAGTCCAGCCAG
CCTGCCCCTTGCTCGCCCACCACCACCACCGCCTCTCCGTCTCGGAGGGG
GCGCCCACCGAGAAGCCCCCCTCAGCCTTCGCCGCTTTCTTCAAGACCCT
ACCCTTGCTCTTGGTCCCAGGCCTGCGCGCCACCACCCTCTGGCTCTGGC
TGATCTGGTTCTCCTTCGGCCTTGCCTACTACGGGATTATCATCCTCTGC
GCCTCCCTCTTCACCCTGGAGGGGGGGGAGGACGACGCCCTCTTTGACTA
CCCGGCTTTGCTCTACGCGGCGGCCTCAGAGGTGAGGCGAGGGCAGGGTG
GGAGGGAGTGCGGACTGTGCTCCCCGCTAGGAAGACTCGGGGGGGCGAGC
AGGGGAGATAGATCTCCATTGGGGGGGGAAAGGACGGTGACCGCAATGAC
TGGCGCTCTGCGATCCATTGCCCCTCGGCATCGGCTTGTCTTTTGAGCAA
CATCCTCCTCCTCATGCAGATGTTCTGGGTGCTGGGCTCCGTCACCGTCG
TAGGGATGGCCTGGGGGGTCCTCACTGAGCATGGATGGCGTTACCTGACG
CATGCTCATATTTTCCATTCTAAGCGCCATCTCCCCCAACTTCGCCTTCC
TCCTGGTCATGCGCTGCATCGTCGGCTTCGGCATCGGGGGCTTGGCCGTG
CCTTTCGACTTGCTCTGCGAGTCCACGCCCACGGAGTTCCGAG
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Synonyms
Publications