EWM22896.1, cds7777 (CDS) Nannochloropsis gaditana

Overview
NameEWM22896.1
Unique Namecds7777
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:419098..419239 -
Alignment locationCM002473.1:418857..418961 -
Alignment locationCM002473.1:417941..418674 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22896.1
ProductMajor facilitator superfamily domain, general substrate transporter
Orig transcript idgnl|cribi|Naga_101830g1.10412.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:419098..419239 -
CM002473.1supercontigCM002473.1:418857..418961 -
CM002473.1supercontigCM002473.1:417941..418674 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR005828Sub_transporter
Homology
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|585103556|gb|EWM22896.1| (Major facilitator superfamily domain, general substrate transporter [Nannochloropsis gaditana])

HSP 1 Score: 649.432 bits (1674), Expect = 0.000e+0
Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0
Query:    1 MLIFSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGEDDALFDYPALLYAAASEVRRGQGGRECGLCSPLGRLGGASRGDRSPLGGERTVTAMTGALRSIAPRHRLVF 326
            MLIFSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGEDDALFDYPALLYAAASEVRRGQGGRECGLCSPLGRLGGASRGDRSPLGGERTVTAMTGALRSIAPRHRLVF
Sbjct:    1 MLIFSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGEDDALFDYPALLYAAASEVRRGQGGRECGLCSPLGRLGGASRGDRSPLGGERTVTAMTGALRSIAPRHRLVF 326          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|553186407|ref|XP_005854412.1| (svop protein [Nannochloropsis gaditana CCMP526] >gi|422294648|gb|EKU21948.1| svop protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 385.571 bits (989), Expect = 3.269e-130
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0
Query:   84 LATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGEDDALFDYPALLYAAASEV 273
            +ATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGEDDALFDYPALLYAAASE 
Sbjct:    1 MATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGEDDALFDYPALLYAAASEA 190          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|167527135|ref|XP_001747900.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163773649|gb|EDQ87287.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 134.42 bits (337), Expect = 8.030e-32
Identity = 86/279 (30.82%), Postives = 137/279 (49.10%), Query Frame = 0
Query:    3 IFSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNG--------IKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGEDDALFDYPALLYAAASEV 273
            I  + SA +PNF  L+ +R  VG GIGG+AVPFD+L E  P+E+RG  L+ ++ FW  G++ V G+AW +L+  GWR L  L ++P+++   +   +PES  WLL  GR+EDA  VL +A + NG         + +  H       ++ S      ++  R  G +G  +  +++E  R+ Q      A     L       +    + F A +    LLL              WFS GL YYG +++    F+    +D   F+YP+L   + +E+
Sbjct:  129 IAGVASAFAPNFEVLVALRAFVGLGIGGMAVPFDILAEFMPSEYRGKALMGIEFFWTFGTLFVNGLAWAMLSAEGWRLLVGLCSVPVVLAMLSFPFMPESPHWLLTVGRSEDAVVVLRRAGELNGRPGAIGPNTRIVLHHETTPSIKYSLSSSPPSAKKYSRTDG-DGTSDSDSDEERERRAQVTIQDDAQSVGSLKEEAAHNSMSVRALFQAKYLRTTLLLF-----------TTWFSTGLTYYGTVLIAPEFFS--QSDDPTDFNYPSLFITSLAEL 393          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|514681447|ref|XP_004988309.1| (hypothetical protein PTSG_10923 [Salpingoeca rosetta] >gi|326434677|gb|EGD80247.1| hypothetical protein PTSG_10923 [Salpingoeca rosetta])

HSP 1 Score: 133.65 bits (335), Expect = 2.859e-31
Identity = 100/330 (30.30%), Postives = 139/330 (42.12%), Query Frame = 0
Query:    8 SAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLE------AEGGREGGREGGREG--GREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAF--------------------AAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILC----------------------------ASLFTLEGGEDDAL--------FDYPALLYAAASEV 273
            SA S +F  L+ +R +VGFGIGG+ VP+DLL E  P++ RG  L  ++ FW  G++ V G+AW +L   GWRYL  +   P+ I       LPES  WLL   R+EDA +V+  AA+ N  +D       L   H   ++      A    EGG +GG +     + G   E  R++ P     A+H H  S           S                            L L      RAT + LW IW +FG AYYG +I+                             A +F+L+G +            FDYPAL  A A+E+
Sbjct:  140 SAFSVDFIMLVALRFLVGFGIGGMGVPYDLLAEFMPSKIRGKALFSIEFFWTFGTLFVNGLAWIMLDRLGWRYLVAVCAAPVAIAMLFFPFLPESPHWLLSVNRSEDALRVVRNAARLNKREDALPPNMRLVRMHNPPVDGKTFVIASSHHEGGVDGGDDEYYRDDAGYHREKNRELTPMLNGTANHKHANSSKHNNTAVSVNSVHNGGGSGSAVASDDDDVADDSGGSMSPLRLFNKANWRATVM-LWTIWSTFGFAYYGAVIITPEYFSGWDHKHNSTNGSSIHNDTLFLQQAPVFSLDGNQTHHHHHHHSTGHFDYPALFTAGAAEL 468          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|1022769653|gb|KZS14128.1| (Synaptic vesicle 2-related protein [Daphnia magna])

HSP 1 Score: 111.694 bits (278), Expect = 1.155e-23
Identity = 78/247 (31.58%), Postives = 117/247 (47.37%), Query Frame = 0
Query:    3 IFSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLF 249
            IF +LS+ SP F ++L++R +VGF IG       L  E  P + RG  ++L+  FW LG+   V +A  ++   GWR+L  L+T+P+ + +  C  LPES+R+L   GRTE+A  VL + A+ NG   L   L     D   S               + G  G A       V P+ P     +  +S+S     + P          L  LL P L+ T+L LW IW +    YYG++++   L 
Sbjct:  167 IFGLLSSFSPTFFWILLLRLLVGFAIGCTPQSVTLYAEFLPVQQRGKCVVLLDSFWALGACFEVLLALIIMPTLGWRWLLALSTIPVFVFTLVCAWLPESARFLAANGRTEEALAVLRRIAEENGKPMLAGRLIV---DDLTS--------------NDSGTSGSA-------VSPSVPGNGDMNSLVSLSSDLRWKSP----------LQRLLSPELKLTSLLLWFIWLACAFCYYGMVLMSTELL 379          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|1129203094|gb|OLQ05776.1| (Synaptic vesicle 2-related protein [Symbiodinium microadriaticum])

HSP 1 Score: 108.997 bits (271), Expect = 2.627e-23
Identity = 85/277 (30.69%), Postives = 122/277 (44.04%), Query Frame = 0
Query:    4 FSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLL-LPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFT--LEGGED----DALFDYPALLYAAASEV 273
            F  L+A+   F  LL+MR IVG G+ GL V FD+L E+ P+  RG     M+ FW  G + VV MAW +L + GW+  T  A LP L+ S A  + LPES RWL++  R  +A  ++   A+ NG+ D+R                                                 L+   HH  +VS                  L L     LR  T    L+WFSFG++YYGI++L   +F   +E GE     +  FD   LL ++++E+
Sbjct:   18 FGFLTALCQGFYSLLIMRAIVGVGVAGLPVGFDILAEAMPSSGRGKFGFYMEFFWTAGGLYVVLMAWLLLEQLGWQIFTAAAALPTLVASLAGYMSLPESPRWLVDMDRESEALAIVKSWAKSNGV-DMRHQ----------------------------------------------QLIKSSHHTDNVS-----------------VLDLFRRSALRWKTFAHSLVWFSFGVSYYGIVMLLPRIFKKGVESGEVAQSCELDFDNKDLLISSSAEI 230          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|514701667|ref|XP_004998401.1| (hypothetical protein PTSG_00929 [Salpingoeca rosetta] >gi|326430656|gb|EGD76226.1| hypothetical protein PTSG_00929 [Salpingoeca rosetta])

HSP 1 Score: 108.997 bits (271), Expect = 8.987e-23
Identity = 91/289 (31.49%), Postives = 122/289 (42.21%), Query Frame = 0
Query:    8 SAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGG--REGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGGE----DDAL-----------------FDYPALLYAAASEV 273
            SA S ++  L+ +R IVG GIGG+ VPFDLL E  P   RG  LL ++ FW  G++ V G+AW +L + GWRYL    ++P+ I   +   LPES  WLL   R ++A KVL KAA+ N   D       L   H    E     E         E G  GG +     +V P                                   +L     R TT+ LW +W + G  YYG +I+    F  +GG     D++                  FDYPAL    A+EV
Sbjct:  178 SAFSVDYYMLVTLRFIVGVGIGGMGVPFDLLAEFMPPSIRGKALLGIEFFWTFGTLFVNGLAWIMLDDLGWRYLVGFCSVPVTIAMISFPFLPESPHWLLLMNRPDEALKVLHKAAKLNKRPDALPAHTRLVLSHEPQPEDGKTYEIADSTALLTETGDAGGDDMPTGSEVSPL----------------------------------MLFDKNNRMTTIMLWAVWATSGFTYYGTVIIAPEFFASQGGNSTSHDNSTIHPHQPNGTHTGGGSKDFDYPALFTTGAAEV 432          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|612389502|ref|XP_007510272.1| (predicted protein [Bathycoccus prasinos] >gi|412992637|emb|CCO18617.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 107.842 bits (268), Expect = 9.622e-23
Identity = 56/144 (38.89%), Postives = 91/144 (63.19%), Query Frame = 0
Query:    4 FSILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLE 147
            F + S+ SPN   L+ MR +VG GIGG +VP+DLL E  P + RG +L+ + +++ +G + +  +A+ VL   GWRYLTLLA++P +++      L ES  WLL +GRTE+A  ++ K A  N + +++S   +   +H AS++
Sbjct:  113 FGVASSFSPNVYVLVCMRFLVGVGIGGFSVPYDLLAEICPDKIRGQVLMSIWVWFAIGGILITELAYFVLDSRGWRYLTLLASVPPVLSLLFLGFLDESPSWLLAKGRTEEAEAIMDKIASTNKL-EMKSFKLEDEEEHHASVK 255          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|731328930|ref|XP_010675318.1| (PREDICTED: organic cation/carnitine transporter 7 [Beta vulgaris subsp. vulgaris] >gi|870862032|gb|KMT13279.1| hypothetical protein BVRB_4g085390 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 108.612 bits (270), Expect = 9.735e-23
Identity = 76/243 (31.28%), Postives = 116/243 (47.74%), Query Frame = 0
Query:    6 ILSAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASL 248
            +LSA++ N+ FLL+ RCIVG G+G   V      E  P   RG  ++L Q FW +GS+T   +AW ++   GWR+L  L+ LP  I     ++ PES R+L  +GR E+A +VL   A+ NG ++L   +          +E E              +  G +D    +V P                    +K   +  +  K++ +LL P L  TTL LWL++F    AYYG+++L   L
Sbjct:  105 VLSALATNYVFLLISRCIVGIGLGAGPVLLTWFLEFVPAPSRGKWMVLFQAFWTVGSITESALAWIIMPHMGWRWLLGLSALPSFILLAFYVITPESPRYLCLKGRKEEALEVLTTIAKING-EELPPGVL------VTDMEME-------------QKSSGTQDN---EVDP--------------------QKWKDSNISVVKSITVLLSPKLIRTTLLLWLVFFGNAFAYYGLVLLTTQL 304          
BLAST of EWM22896.1 vs. NCBI_GenBank
Match: gi|514701665|ref|XP_004998400.1| (hypothetical protein PTSG_00928 [Salpingoeca rosetta] >gi|326430655|gb|EGD76225.1| hypothetical protein PTSG_00928 [Salpingoeca rosetta])

HSP 1 Score: 108.227 bits (269), Expect = 2.338e-22
Identity = 90/291 (30.93%), Postives = 124/291 (42.61%), Query Frame = 0
Query:    8 SAISPNFAFLLVMRCIVGFGIGGLAVPFDLLCESTPTEFRGNILLLMQMFWVLGSVTVVGMAWGVLTEHGWRYLTLLATLPLLITSFACLLLPESSRWLLEEGRTEDAWKVLIKAAQWNGIKDLRSHLFDLRWDHAASLEAEGGREGGREGGREGGREGGAEDEAARQVQPACPLLAHHHHRLSVSEGAPTEKPPSAFAAFFKTLPLLLVPGLRATTLWLWLIWFSFGLAYYGIIILCASLFTLEGG-------------------------EDDALFDYPALLYAAASEV 273
            SA S ++  L+ +R IVG GIGG+ VPFDLL E  P   RG  L+ ++ FW  G++ V G+AW +L + GWRYL    ++P+ +   +   LPES  WLL   R ++A + + KAA+ N  +D       L   H                      E   ED    ++  +  LL          E  PT    S    F K          R  T+ LW+ W SFG  YYG +I+    F  EGG                          +D+ FDYPAL    A+EV
Sbjct:  282 SAFSVDYYMLVTLRFIVGVGIGGMGVPFDLLAEFMPPSIRGKALISIEFFWTFGTLFVNGLAWIMLDDLGWRYLVGFCSVPVALAMLSFPFLPESPHWLLMMNRHDEALETIRKAAKINKRQDALPARMRLVLSH----------------------EPQPEDGKTYEIADSTALLP------GTVEDVPTASEVSPLMLFDKN--------NRMATITLWIAWASFGFTYYGTVIIAPEFF--EGGSGGSANSTANNGTSGNATGGNGTHINNDSNFDYPALFTTGAAEV 534          
The following BLAST results are available for this feature:
BLAST of EWM22896.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103556|gb|EWM22896.1|0.000e+0100.00Major facilitator superfamily domain, general subs... [more]
gi|553186407|ref|XP_005854412.1|3.269e-13098.95svop protein [Nannochloropsis gaditana CCMP526] >g... [more]
gi|167527135|ref|XP_001747900.1|8.030e-3230.82hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|514681447|ref|XP_004988309.1|2.859e-3130.30hypothetical protein PTSG_10923 [Salpingoeca roset... [more]
gi|1022769653|gb|KZS14128.1|1.155e-2331.58Synaptic vesicle 2-related protein [Daphnia magna][more]
gi|1129203094|gb|OLQ05776.1|2.627e-2330.69Synaptic vesicle 2-related protein [Symbiodinium m... [more]
gi|514701667|ref|XP_004998401.1|8.987e-2331.49hypothetical protein PTSG_00929 [Salpingoeca roset... [more]
gi|612389502|ref|XP_007510272.1|9.622e-2338.89predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|731328930|ref|XP_010675318.1|9.735e-2331.28PREDICTED: organic cation/carnitine transporter 7 ... [more]
gi|514701665|ref|XP_004998400.1|2.338e-2230.93hypothetical protein PTSG_00928 [Salpingoeca roset... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7798rna7798Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications