rna7797, rna7797 (mRNA) Nannochloropsis gaditana

Overview
Namerna7797
Unique Namerna7797
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length646
Alignment locationCM002473.1:414673..415497 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101485g1.3219.mrna
Orig protein idgnl|cribi|Naga_101485g1.3219
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:414673..415497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101485g1gene7554Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7797rna7797-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22897.1cds7776Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7797 ID=rna7797|Name=rna7797|organism=Nannochloropsis gaditana|type=mRNA|length=646bp
CGAATGACAGGCGAATATAGCAATATAAAACAGACAACGGTTGGGAAGAC
GAAGTACTCGGCAGGACCTGCTGAACGTGTCAAAGCAGCAGATAAAGAGC
ATTGGAATGACGTCCACCGCCTCTTTGCGTGCTGTTCAGGGGCTCCTTAG
GAGTCGACACTCTGGCCTCCGTCATGTCGGCTCGCTTGCAGCATTGTCTG
GTGCTCAGAGCTCTCCCTTGTTGTGTCCACGTCATCCGTCACCGCGGCCG
GCAGCCCTGTCCCCTCCCCTTTCCTCCTCCTTTTCCTCCGCCTCCCCTTC
GTCCTCTTCGCCTCCCCTCGCAGCTGATCGCACAGATGCGGAGCCCCAGG
TCCGAGCCACTGCCCGCACTCTGTCTCTCCCTCAACGTATTCTTCACTTC
TTTGGCATGGGGGAATCGATGAAGCGCACCCGAAACTCCGAGGCGTTGCT
CCAATCCTGCATCAGCCAGGCGGGCAACACGATTTTTTATCGAGCCGGGC
GCGTCTCAGACTCCTTCCGAGCGGCTCATGGGCTTTTGATCGTGCACGTG
TGGATGCTTCACAAGCGGCTGCTCATGGAGGGCGAGGAGGGAAAGATCCT
GGAGGAAGCCCTCTTCGACCGCCTGTGGTACGTGCCTGCGATTTAA
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protein sequence of rna7797

>rna7797-protein ID=rna7797-protein|Name=rna7797|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MREYTTDFAPWYLMMSSNISNGGGLYASVAFGGVVAILAWMMFFLSGKEL
NDISTWRIVKLLTGGVDMRARRRATQHFRVTRCTWIEASTNDETCYRKYH
LSILDKMLCPVTIINMHYFYEVS
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mRNA from alignment at CM002473.1:414673..415497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7797 ID=rna7797|Name=rna7797|organism=Nannochloropsis gaditana|type=mRNA|length=825bp|location=Sequence derived from alignment at CM002473.1:414673..415497- (Nannochloropsis gaditana)
ATGCGTGAATATACGACAGACTTTGCCCCTTGGTATCTCATGATGTCCTC
TAATATTTCCAACGGTGGCGGACTGTACGCCTCAGTCGCCTTCGGCGGTG
TCGTAGCAATCCTCGCTTGGATGATGTTCTTTTTATCTGGGAAAGAATTA
AATGATATATCGACGTGGAGGATAGTGAAGCTTCTGACAGGGGGGGTGGA
CATGAGGGCAAGGCGCAGAGCCACGCAGCATTTCCGTGTGACTAGATGCA
CATGGATTGAGGCTTCTACGAATGATGAGGTGCGGGCGAGAGAGGGAGAG
AGGAAAAAGCTTAGGATTAGTACCCAAAGCGCAAATCTGACGTCCCGCAG
CCAGTACAGGGAGGGCAGGCTTTTCTTCCCGTGCCTCCTTCCTCCACACA
TTCCACGTCTCTCTTTCGAGTCTCATCTATTATTTCTCGCATTCTTCTCC
TCCTCCCGTTTCCATTCCATCTCTCTCAATCATCTGTCAGACGTGTTACC
GGAAATATCACCTCTCCATCCTGGACAAGATGCTGTGCCCCGTCACCATC
ATCAACATGCACTATTTTTACGAGGTAAGCCATTGGCTAAGCCCTCGTGA
CCGCAGCACCGACAGCCCCCTCGTACTAACTCCTGCCTTCATTCTACCCC
TACTCCTCACTTATTTTCCCCTGCTGAACCTGCTTCTTCTTCTTAATCAC
CTCCAACTCGTCCACTCTCATGTCCCACCGTCAGGCAACCCTGGAAGCGG
CCTCCCTCAAAGCCTCCCTCGGTCGCCTCCTCGCCCTCCACCCCTTCCTC
GCGGGCTCTCTCACAGGTTTCCTAA
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Coding sequence (CDS) from alignment at CM002473.1:414673..415497-

>rna7797 ID=rna7797|Name=rna7797|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002473.1:414673..415497- (Nannochloropsis gaditana)
GTTTCCTAAACGTGTTACCGGAAATATCACCTCTCCATCCTGGACAAGAT
GCTGTGCCCCGTCACCATCATCAACATGCACTATTTTTACGAGATGCGTG
AATATACGACAGACTTTGCCCCTTGGTATCTCATGATGTCCTCTAATATT
TCCAACGGTGGCGGACTGTACGCCTCAGTCGCCTTCGGCGGTGTCGTAGC
AATCCTCGCTTGGATGATGTTCTTTTTATCTGGGAAAGAATTAAATGATA
TATCGACGTGGAGGATAGTGAAGCTTCTGACAGGGGGGGTGGACATGAGG
GCAAGGCGCAGAGCCACGCAGCATTTCCGTGTGACTAGATGCACATGGAT
TGAGGCTTCTACGAATGATGAGGTTTCCTAAACGTGTTACCGGAAATATC
ACCTCTCCATCCTGGACAAGATGCTGTGCCCCGTCACCATCATCAACATG
CACTATTTTTACGAGATGCGTGAATATACGACAGACTTTGCCCCTTGGTA
TCTCATGATGTCCTCTAATATTTCCAACGGTGGCGGACTGTACGCCTCAG
TCGCCTTCGGCGGTGTCGTAGCAATCCTCGCTTGGATGATGTTCTTTTTA
TCTGGGAAAGAATTAAATGATATATCGACGTGGAGGATAGTGAAGCTTCT
GACAGGGGGGGTGGACATGAGGGCAAGGCGCAGAGCCACGCAGCATTTCC
GTGTGACTAGATGCACATGGATTGAGGCTTCTACGAATGATGAGGTTTCC
TAAACGTGTTACCGGAAATATCACCTCTCCATCCTGGACAAGATGCTGTG
CCCCGTCACCATCATCAACATGCACTATTTTTACGAGATGCGTGAATATA
CGACAGACTTTGCCCCTTGGTATCTCATGATGTCCTCTAATATTTCCAAC
GGTGGCGGACTGTACGCCTCAGTCGCCTTCGGCGGTGTCGTAGCAATCCT
CGCTTGGATGATGTTCTTTTTATCTGGGAAAGAATTAAATGATATATCGA
CGTGGAGGATAGTGAAGCTTCTGACAGGGGGGGTGGACATGAGGGCAAGG
CGCAGAGCCACGCAGCATTTCCGTGTGACTAGATGCACATGGATTGAGGC
TTCTACGAATGATGAG
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Synonyms
Publications