rna7796, rna7796 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7796
Unique Name	rna7796
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	654
Alignment location	CM002473.1:405437..406426 -

Link to JBrowse

Properties


Property Name	Value
Product	Ubiquinol-cytochrome c chaperone/UPF0174
Orig transcript id	gnl\|cribi\|Naga_101099g1.109.mrna
Orig protein id	gnl\|cribi\|Naga_101099g1.109
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:405437..406426 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101099g1	gene7552	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7796	rna7796-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22898.1	cds7775	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:405437..406426-
coding sequence from alignment at CM002473.1:405437..406426-

mRNA sequence

>rna7796 ID=rna7796|Name=rna7796|organism=Nannochloropsis gaditana|type=mRNA|length=654bp
TCTCCAGATACGTATACCTGCGAGACGAGCATCTCACGGAGGACCACGTC
CTGGAGCTTGCCAGGTACGTGCTCCGGGAGTTCGACTCTCTGAAAACGCT
CCCCAAGGAGGCGATCTTCGAATCTCGCTTTAAATGGGGGCCGCTTCCAG
CCTGGGGCCGAGGAAGGGAGGGAGGGAGGGCGGGGCGGAGGATGTATCCC
CGCTTTGTGACACCGGACGGGAAGGCAGTTGAGGAGGAGGAGGGAGAGAT
GGGGGACGGTCGGGAGGAGAGGGAGGAGGAGGAAGGGGAGGAAGACAAGA
GGGGGGAGTGGAGGACGGCATTTTCGGAGCAAGGACGGATGTACTATTGG
AATGTAAGGACGCGGGTGTCTACGTATGAGAAACCCTACTAGAGAGAGAG
TAATGGTGGGCGTCAACATAGAAGAACGATGTCACCCGGGCGAGCGCGCA
TGGCGGCAGAAAGACAGCAAGGGGAAAAAGAAGAAAAAAGGAGCGAAAGA
AGAAAAGACAGGCCCACGCTGAAGATGCATGTGAGGGGAAGCGTTCGAAT
AATGGTTTCTTGATCGAAAGATGCCGTACGAAGACGTTCTCCCTAGACGT
GTCACGGAAATGGAATTACACTACACCATTTATTTAATCAAGCCGGATCC
GTCC

protein sequence of rna7796

>rna7796-protein ID=rna7796-protein|Name=rna7796|organism=Nannochloropsis gaditana|type=polypeptide|length=179bp
MTSTASLRAVQGLLRSRHSGLRHVGSLAALSGAQSSPLLCPRHPSPRPAA
LSPPLSSSFSSASPSSSSPPLAADRTDAEPQVRATARTLSLPQRILHFFG
MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWM
LHKRLLMEGEEGKILEEALFDRLWYVPAI

mRNA from alignment at CM002473.1:405437..406426-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7796 ID=rna7796|Name=rna7796|organism=Nannochloropsis gaditana|type=mRNA|length=990bp|location=Sequence derived from alignment at CM002473.1:405437..406426- (Nannochloropsis gaditana)
CGAATGACAGGCGAATATAGCAATATAAAACAGACAACGGTTGGGAAGAC
GAAGTACTCGGCAGGACCTGCTGAACGTGTCAAAGCAGCAGATAAAGAGC
ATTGGAATGACGTCCACCGCCTCTTTGCGTGCTGTTCAGGGGCTCCTTAG
GAGTCGACACTCTGGCCTCCGTCATGTCGGCTCGCTTGCAGCATTGTCTG
GTGCTCAGAGCTCTCCCTTGTTGTGTCCACGTCATCCGTCACCGCGGCCG
GCAGCCCTGTCCCCTCCCCTTTCCTCCTCCTTTTCCTCCGCCTCCCCTTC
GTCCTCTTCGCCTCCCCTCGCAGCTGATCGCACAGATGCGGAGCCCCAGG
TCCGGCTTCATCCATGTGTAGGACAAGGCCGACAGGGATCGGCGCTCACT
CCTTCCTTCCCTCCTTCCCTCCCTCCTTCCTTCCTTCCCTCCTTCCCTCC
CTCCTTCCACGCCCCCCCCCTAGGTCCGAGCCACTGCCCGCACTCTGTCT
CTCCCTCAACGTATTCTTCACTTCTTTGGCATGGGGGAATCGATGAAGCG
CACCCGAAACTCCGAGGCGTTGCTCCAATCCTGCATCAGCCAGGCGGGCA
ACACGATTTTTTATCGAGGTACGAGACACCGCCACTTGTTGTCGGGATAA
AGGGCGGTATATTTTGAGAATAAGTGAGAAGTGTGCACGGATGCGTGGGA
GAATGTGGAAGGGGAATGGGGGAAAGCGGGGAGTGCGGGGCAGAGCGAGG
GAGAAGGACTGCCGCGAGGCGATGATCTCCTCCTTCCCTCCCTCCCTCCC
TCCCTCCCTCCACCCTTCCCAACTTCCCAAAATCCCAGCCGGGCGCGTCT
CAGACTCCTTCCGAGCGGCTCATGGGCTTTTGATCGTGCACGTGTGGATG
CTTCACAAGCGGCTGCTCATGGAGGGCGAGGAGGGAAAGATCCTGGAGGA
AGCCCTCTTCGACCGCCTGTGGTACGTGCCTGCGATTTAA

Coding sequence (CDS) from alignment at CM002473.1:405437..406426-

>rna7796 ID=rna7796|Name=rna7796|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002473.1:405437..406426- (Nannochloropsis gaditana)
CCGGGCGCGTCTCAGACTCCTTCCGAGCGGCTCATGGGCTTTTGATCGTG
CACGTGTGGATGCTTCACAAGCGGCTGCTCATGGAGGGCGAGGAGGGAAA
GATCCTGGAGGAAGCCCTCTTCGACCGCCTGTGGTACGTGCCTGCGATTT
AAGTCCGAGCCACTGCCCGCACTCTGTCTCTCCCTCAACGTATTCTTCAC
TTCTTTGGCATGGGGGAATCGATGAAGCGCACCCGAAACTCCGAGGCGTT
GCTCCAATCCTGCATCAGCCAGGCGGGCAACACGATTTTTTATCGAGATG
ACGTCCACCGCCTCTTTGCGTGCTGTTCAGGGGCTCCTTAGGAGTCGACA
CTCTGGCCTCCGTCATGTCGGCTCGCTTGCAGCATTGTCTGGTGCTCAGA
GCTCTCCCTTGTTGTGTCCACGTCATCCGTCACCGCGGCCGGCAGCCCTG
TCCCCTCCCCTTTCCTCCTCCTTTTCCTCCGCCTCCCCTTCGTCCTCTTC
GCCTCCCCTCGCAGCTGATCGCACAGATGCGGAGCCCCAGCCGGGCGCGT
CTCAGACTCCTTCCGAGCGGCTCATGGGCTTTTGATCGTGCACGTGTGGA
TGCTTCACAAGCGGCTGCTCATGGAGGGCGAGGAGGGAAAGATCCTGGAG
GAAGCCCTCTTCGACCGCCTGTGGTACGTGCCTGCGATTTAAGTCCGAGC
CACTGCCCGCACTCTGTCTCTCCCTCAACGTATTCTTCACTTCTTTGGCA
TGGGGGAATCGATGAAGCGCACCCGAAACTCCGAGGCGTTGCTCCAATCC
TGCATCAGCCAGGCGGGCAACACGATTTTTTATCGAGATGACGTCCACCG
CCTCTTTGCGTGCTGTTCAGGGGCTCCTTAGGAGTCGACACTCTGGCCTC
CGTCATGTCGGCTCGCTTGCAGCATTGTCTGGTGCTCAGAGCTCTCCCTT
GTTGTGTCCACGTCATCCGTCACCGCGGCCGGCAGCCCTGTCCCCTCCCC
TTTCCTCCTCCTTTTCCTCCGCCTCCCCTTCGTCCTCTTCGCCTCCCCTC
GCAGCTGATCGCACAGATGCGGAGCCCCAGCCGGGCGCGTCTCAGACTCC
TTCCGAGCGGCTCATGGGCTTTTGATCGTGCACGTGTGGATGCTTCACAA
GCGGCTGCTCATGGAGGGCGAGGAGGGAAAGATCCTGGAGGAAGCCCTCT
TCGACCGCCTGTGGTACGTGCCTGCGATTTAAGTCCGAGCCACTGCCCGC
ACTCTGTCTCTCCCTCAACGTATTCTTCACTTCTTTGGCATGGGGGAATC
GATGAAGCGCACCCGAAACTCCGAGGCGTTGCTCCAATCCTGCATCAGCC
AGGCGGGCAACACGATTTTTTATCGAGATGACGTCCACCGCCTCTTTGCG
TGCTGTTCAGGGGCTCCTTAGGAGTCGACACTCTGGCCTCCGTCATGTCG
GCTCGCTTGCAGCATTGTCTGGTGCTCAGAGCTCTCCCTTGTTGTGTCCA
CGTCATCCGTCACCGCGGCCGGCAGCCCTGTCCCCTCCCCTTTCCTCCTC
CTTTTCCTCCGCCTCCCCTTCGTCCTCTTCGCCTCCCCTCGCAGCTGATC
GCACAGATGCGGAGCCCCAG

Synonyms

Publications