EWM22898.1, cds7775 (CDS) Nannochloropsis gaditana

Overview
NameEWM22898.1
Unique Namecds7775
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:406078..406320 -
Alignment locationCM002473.1:405809..405953 -
Alignment locationCM002473.1:405437..405588 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22898.1
ProductUbiquinol-cytochrome c chaperone/UPF0174
Orig transcript idgnl|cribi|Naga_101099g1.109.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:406078..406320 -
CM002473.1supercontigCM002473.1:405809..405953 -
CM002473.1supercontigCM002473.1:405437..405588 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR007129Ubiqinol_cyt_c_chaperone_CPB3
IPR021150Ubiq_cyt_c_chap/UPF0174
Homology
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|585103566|gb|EWM22898.1| (Ubiquinol-cytochrome c chaperone/UPF0174 [Nannochloropsis gaditana])

HSP 1 Score: 357.066 bits (915), Expect = 1.184e-124
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0
Query:    1 MTSTASLRAVQGLLRSRHSGLRHVGSLAALSGAQSSPLLCPRHPSPRPAALSPPLSSSFSSASPSSSSPPLAADRTDAEPQVRATARTLSLPQRILHFFGMGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLWYVPAI 179
            MTSTASLRAVQGLLRSRHSGLRHVGSLAALSGAQSSPLLCPRHPSPRPAALSPPLSSSFSSASPSSSSPPLAADRTDAEPQVRATARTLSLPQRILHFFGMGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLWYVPAI
Sbjct:    1 MTSTASLRAVQGLLRSRHSGLRHVGSLAALSGAQSSPLLCPRHPSPRPAALSPPLSSSFSSASPSSSSPPLAADRTDAEPQVRATARTLSLPQRILHFFGMGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLWYVPAI 179          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|953501437|emb|CEG37438.1| (Ubiquinol cytochrome c reductase assembly protein CBP3 [Plasmopara halstedii])

HSP 1 Score: 86.2705 bits (212), Expect = 7.614e-17
Identity = 56/168 (33.33%), Postives = 82/168 (48.81%), Query Frame = 0
Query:   22 RHVGSLAALSGAQSSPLLCPRHPSPRPAALSPPLSSSFSSASPSSSSPPLAADRTDAEP--------------QVRATARTLSLPQRILHFFG-MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            RH      + G+ SS L  PRH     AA    L  +F+SA+   ++   A   TD  P               V  +   +     +    G + E  +  RNS A+ QSC++      +Y    +S SFRA   LL+VHVW++H+RL +EGE+GK+++E LFDRLW
Sbjct:   18 RHNSGGIEVKGS-SSLLFYPRHV----AAECLTLHRAFASAASVEAARKFAWAETDIAPPSPGRGIIGRSSNVDVTKSENPIQRWHWLWKMLGFLNEDDRLFRNSTAVFQSCMNYTARPEYYSELGISKSFRAQQALLMVHVWLVHRRLALEGEQGKVMQELLFDRLW 180          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|568010726|gb|ETL84909.1| (hypothetical protein L917_15392 [Phytophthora parasitica])

HSP 1 Score: 80.4925 bits (197), Expect = 9.184e-15
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++      +YRA  +S SFRA   LL+VHVW++H+RL +E E+GKI++E +FDRLW
Sbjct:  106 LNEDDRLFRHSTAVFQSCMNHTARPEYYRALGLSRSFRAQQALLMVHVWLVHRRLALEDEQGKIMQELMFDRLW 179          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|695432038|ref|XP_009530837.1| (hypothetical protein PHYSODRAFT_513194 [Phytophthora sojae] >gi|348673589|gb|EGZ13408.1| hypothetical protein PHYSODRAFT_513194 [Phytophthora sojae])

HSP 1 Score: 78.9518 bits (193), Expect = 9.755e-15
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++Q     +YRA  +  SFRA   LL+ HVW++H+RL +EG++GKI++E +FDRLW
Sbjct:    5 LNEDDRLFRHSTAVFQSCMNQTARPEYYRALGLPRSFRAQQALLMAHVWIVHRRLALEGDQGKIMQELMFDRLW 78          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|570318851|gb|ETO66799.1| (hypothetical protein F444_16113 [Phytophthora parasitica P1976])

HSP 1 Score: 80.4925 bits (197), Expect = 1.059e-14
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++      +YRA  +S SFRA   LL+VHVW++H+RL +E E+GKI++E +FDRLW
Sbjct:  106 LNEDDRLFRHSTAVFQSCMNHTARPEYYRALGLSRSFRAQQALLMVHVWLVHRRLALEDEQGKIMQELMFDRLW 179          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|675204669|ref|XP_008911219.1| (hypothetical protein PPTG_15680 [Phytophthora parasitica INRA-310] >gi|568088589|gb|ETN03446.1| hypothetical protein PPTG_15680 [Phytophthora parasitica INRA-310] >gi|570973283|gb|ETP35950.1| hypothetical protein F442_15981 [Phytophthora parasitica P10297] >gi|970629527|gb|KUF76762.1| Ubiquinol-cytochrome-c reductase complex assembly factor 1 [Phytophthora nicotianae] >gi|970657948|gb|KUF95772.1| Kinesin protein [Phytophthora nicotianae])

HSP 1 Score: 80.4925 bits (197), Expect = 1.089e-14
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++      +YRA  +S SFRA   LL+VHVW++H+RL +E E+GKI++E +FDRLW
Sbjct:  106 LNEDDRLFRHSTAVFQSCMNHTARPEYYRALGLSRSFRAQQALLMVHVWLVHRRLALEDEQGKIMQELMFDRLW 179          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|568040644|gb|ETM38092.1| (hypothetical protein L914_15524 [Phytophthora parasitica])

HSP 1 Score: 80.4925 bits (197), Expect = 1.089e-14
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++      +YRA  +S SFRA   LL+VHVW++H+RL +E E+GKI++E +FDRLW
Sbjct:  106 LNEDDRLFRHSTAVFQSCMNHTARPEYYRALGLSRSFRAQQALLMVHVWLVHRRLALEDEQGKIMQELMFDRLW 179          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|567952572|gb|ETK78244.1| (hypothetical protein L915_15674 [Phytophthora parasitica] >gi|570942663|gb|ETP07920.1| hypothetical protein F441_15957 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 80.1073 bits (196), Expect = 1.383e-14
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++      +YRA  +S SFRA   LL+VHVW++H+RL +E E+GKI++E +FDRLW
Sbjct:  106 LNEDDRLFRHSTAVFQSCMNYTARPEYYRALGLSRSFRAQQALLMVHVWLVHRRLALEDEQGKIMQELMFDRLW 179          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|567981236|gb|ETL31679.1| (hypothetical protein L916_15569 [Phytophthora parasitica])

HSP 1 Score: 80.1073 bits (196), Expect = 1.457e-14
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++      +YRA  +S SFRA   LL+VHVW++H+RL +E E+GKI++E +FDRLW
Sbjct:  106 LNEDDRLFRHSTAVFQSCMNYTARPEYYRALGLSRSFRAQQALLMVHVWLVHRRLALEDEQGKIMQELMFDRLW 179          
BLAST of EWM22898.1 vs. NCBI_GenBank
Match: gi|566015119|gb|ETI38030.1| (hypothetical protein F443_16128 [Phytophthora parasitica P1569])

HSP 1 Score: 79.7221 bits (195), Expect = 1.595e-14
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 0
Query:  101 MGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
            + E  +  R+S A+ QSC++      +YRA  +S SFRA   LL+VHVW++H+RL +E E+GKI++E +FDRLW
Sbjct:  106 LNEDDRLFRHSTAVFQSCMNYTARPEYYRALGLSRSFRAQQALLMVHVWLVHRRLALEDEQGKIMQELMFDRLW 179          
The following BLAST results are available for this feature:
BLAST of EWM22898.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103566|gb|EWM22898.1|1.184e-124100.00Ubiquinol-cytochrome c chaperone/UPF0174 [Nannochl... [more]
gi|953501437|emb|CEG37438.1|7.614e-1733.33Ubiquinol cytochrome c reductase assembly protein ... [more]
gi|568010726|gb|ETL84909.1|9.184e-1547.30hypothetical protein L917_15392 [Phytophthora para... [more]
gi|695432038|ref|XP_009530837.1|9.755e-1545.95hypothetical protein PHYSODRAFT_513194 [Phytophtho... [more]
gi|570318851|gb|ETO66799.1|1.059e-1447.30hypothetical protein F444_16113 [Phytophthora para... [more]
gi|675204669|ref|XP_008911219.1|1.089e-1447.30hypothetical protein PPTG_15680 [Phytophthora para... [more]
gi|568040644|gb|ETM38092.1|1.089e-1447.30hypothetical protein L914_15524 [Phytophthora para... [more]
gi|567952572|gb|ETK78244.1|1.383e-1447.30hypothetical protein L915_15674 [Phytophthora para... [more]
gi|567981236|gb|ETL31679.1|1.457e-1447.30hypothetical protein L916_15569 [Phytophthora para... [more]
gi|566015119|gb|ETI38030.1|1.595e-1447.30hypothetical protein F443_16128 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7796rna7796Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications