rna7791, rna7791 (mRNA) Nannochloropsis gaditana

Overview
Namerna7791
Unique Namerna7791
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length883
Alignment locationCM002473.1:392876..394132 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101054g2.2120.mrna
Orig protein idgnl|cribi|Naga_101054g2.2120
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:392876..394132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101054g2gene7547Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7791rna7791-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22903.1cds7770Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7791 ID=rna7791|Name=rna7791|organism=Nannochloropsis gaditana|type=mRNA|length=883bp
CTCACTCTCAGGCCCACTCGCCTTACGCCCATGCATCACGGCCCTCCAGC
ACCCGACGTCGGAGTGGAAGCGACAGCAGCGACGGCAGCAGTGGTGCTGG
CCACAGTACTGACAGCGAGGATATGCGAGCCTTCCAAGAGGAGGAGGAGG
AGGAGGAGGGGAAGGAGGAGGGGGGGAGGGGGAGAAGGCGGGAAGTAGAT
TTCCTCCTCCTGTCTACTGGCGGGACGTGTTGGACAATGAGTCTTAGGGA
AAGAGGGGAGGGAGGTATTGGATGTGCAGAGGCCGTGAAGGGGGATAGAG
CTAAAGAGGAAACAAGTCTGAGAGAACGATAGGGAGGAGGTATTGCATGT
ACAGATGCCGTAAAAGAGGATAGAGCCAAGCAGACATCAATTTTTCGGGG
AAATAGGGGAGGAGGTATTGCATATACAGATATCTGAAGGAGGATAGAGC
CAATTAGACAAGTCTTAGGGAAAGAAGGGGAGGAGGAATTGCATATACGG
ATGCCTTGAGAGAGGATAGAGCCAAGCAGACATCGAATCTAAGGAAAAGG
AGATATGGAGGTATTGCATATACAAGACACGGAGAAGGGGGAGGGACATC
GAAAAAAATCATTTTGTGGTATAATCTCAAAATTTCTAGTTGTGTGTGTG
TGTCCACTTTAGGTATTGCTTGTTTCCGATGTATTCCACGAATGCCTCTC
TCTAAGTACTAACACTGAGAGCTATCAACTACCCAAGACTGCAGAGCTCC
TTTCCTTCTCTTTTGCTTTTTCCTTCCTTCCTATCCACGATGTATGGCCC
CGCCTGTAGCCCTCTCAATCCTTCGCGCATGTCCAGTTTTTAGCCCTACT
CTTTCTTCCTTCCTTCCTCCCTTTCTCCCTTCT
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protein sequence of rna7791

>rna7791-protein ID=rna7791-protein|Name=rna7791|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
MIERTLDRIKLHKGGQHRRKTMSFPRSRYPSIHRTDHAYRQTWHIHPTCR
RARHQEKRCSRAGKRGKNQDQQGAGGLLLLTCVRIKRRSSSRLALCSFWA
STDHAVDPKAFRCGNMSPSRCHDWRLGGRLPLGKEGGEARKRRGEV
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mRNA from alignment at CM002473.1:392876..394132+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7791 ID=rna7791|Name=rna7791|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp|location=Sequence derived from alignment at CM002473.1:392876..394132+ (Nannochloropsis gaditana)
CTTAGTCCATACAGGCACCTATAAAGCCACAACAACATTGATCGTTCGCT
GTTCATCAAGCATGGCCTGAATCAATCTTATCCCGCGGCTGGAATAGGCT
GGGCCGGAGGGACTGACACAAATGAGAGATGATCGAGAGGACTCTTGATC
GGATCAAGCTACacaaaggagggcagcaccGTCGGAAAACAATGTCTTTC
CCGAGATCAAGATACCCTTCCATACATCGTACTGACCACGCTTATAGACA
AACGTGGCACATACATCCAACATGCAGACGGGCGCGGCACCAAGAAAAAA
GGTGTTCAAGAGCGGGAAAGCGGGGAAAAAACCAAGATCAACAAGGGGCA
GGCGGCCTTCTGTTACTAACGTGCGTGCGAATAAAGCGAAGGTCAAGCAG
TCGCCTCGCCTTATGTTCATTTTGGGCGTCAACGGACCACGCCGTGGATC
CAAAAGCTTTTCGCTGTGGAAATATGTCACCTTCGAGATGCCACGACTGG
CGGCTGGGCGGACGACTGCctttggggaaagagggtggtgAGGCGAGAAA
GCGTCGAGGAGAGGTCTGAGTATCGTGTGAAGACGATACCCTTCTCGGGC
CCCTGAAACCCCAAAAATGGTCTTTGCAACCTGCTTGACTGGTTTTGCCC
CATGCAAATCATAAGTTGCTGCTCTCTTGAATCCTTTTAGTACACTGGAC
CGCGTGAGGGCTTTGATTCTTAATAGTATATTTTTGGGAGGACAGTATTA
TAGATGTAGGCAGGCTTTCCCTAGCGGTGTTTCTCAGATGCCAGCAGTGC
CGACGGCGATGCACGAGGAGAACCATTACCTTTTGGTCAATACACTTGTC
AGGAGCATTGAGGCACGCAAATACGGCGCACATGATTTTGCGCTATTCGT
CTTGAACAACTTCTTGGTATTTTTCAGTAGCTGAACTTTCATGAGAAGCT
GAGCTTTTTGTAGGATTTACGGTACAGAAGAGGGAAATTTACATGGCAAA
AATATTCTACTTCCAGGAAGAATACGCCCGTATTACTGCAACTTTGAAGA
ATGCTTTTATCACTCGTAAAGTCAGTTATAGGGAGAATTGTATTTGCCAA
ACCAATCTCAGGCCTTTTTTTAAATGTACCTTGTAGCCCCTTGCAGAATG
CGTTAGCTCGCGCGCTGATAATGGGTAAGCAAGCGCAGAAAAGGAAAGCT
AAAGAAATTGCATTTACTTTTAATTCTGTGTATTGTTACTTTTACCGTTG
CCTTCGT
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Coding sequence (CDS) from alignment at CM002473.1:392876..394132+

>rna7791 ID=rna7791|Name=rna7791|organism=Nannochloropsis gaditana|type=CDS|length=441bp|location=Sequence derived from alignment at CM002473.1:392876..394132+ (Nannochloropsis gaditana)
ATGATCGAGAGGACTCTTGATCGGATCAAGCTACacaaaggagggcagca
ccGTCGGAAAACAATGTCTTTCCCGAGATCAAGATACCCTTCCATACATC
GTACTGACCACGCTTATAGACAAACGTGGCACATACATCCAACATGCAGA
CGGGCGCGGCACCAAGAAAAAAGGTGTTCAAGAGCGGGAAAGCGGGGAAA
AAACCAAGATCAACAAGGGGCAGGCGGCCTTCTGTTACTAACGTGCGTGC
GAATAAAGCGAAGGTCAAGCAGTCGCCTCGCCTTATGTTCATTTTGGGCG
TCAACGGACCACGCCGTGGATCCAAAAGCTTTTCGCTGTGGAAATATGTC
ACCTTCGAGATGCCACGACTGGCGGCTGGGCGGACGACTGCctttgggga
aagagggtggtgAGGCGAGAAAGCGTCGAGGAGAGGTCTGA
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Synonyms
Publications