rna779, rna779 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna779
Unique Name	rna779
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4475
Alignment location	CM002456.1:394997..396181 -

Link to JBrowse

Properties


Property Name	Value
Product	conserved protein with yshh some fused to
Orig transcript id	gnl\|cribi\|Naga_100035g40.3372.mrna
Orig protein id	gnl\|cribi\|Naga_100035g40.3372
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:394997..396181 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100035g40	gene744	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29908.1	cds779	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna779	rna779-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:394997..396181-
coding sequence from alignment at CM002456.1:394997..396181-

mRNA sequence

>rna779 ID=rna779|Name=rna779|organism=Nannochloropsis gaditana|type=mRNA|length=4475bp
CAGGATGTTGAAAGTTCTCAGGTTAACTCCTAAGAAGCGTAGGGATGAGG
TCCACACGATGCCGTACACGCCGCTTTAGCTAAAACCACAGGACTCCGAC
CTCCCCACCTTGCGCATACATCCCCATGACTACACTCGCTCTGCATGCCC
CGTGCACACCACGTGGCGCAAGGAAAGACACTCCGCATCGATCATGGCCA
CGCATTGCAACATGTATTCTTTTCTTCTCTCTTTCCGTCCTGCCGGCGCG
GAATCAGGCATACAAATTTGCACTGCCACAGAGACAGTTACGACGGCCAC
TTCCCTTCGCAAGACAGTTTTCATCCTCGTCACTGAACGTCAAATCACGA
GGCACCAGTGAAGAGGATGGCGATAATAGTAAAATCAAATCCAAGGCGGA
TCGTGGTGAAAATTCATCGTGGCAGTGGACTGCTTCTAAAAAACCTGCGA
CTTCACGTCCTCCCCACCATGGTGAAGATACCTTGAAATCTCGTTGGCAT
TTTTCTTCTAGGACTCGCTCAGGCAGTGCAGGACAACGGAGCCAAATGTT
GTTATCTTGTGACCCCGGAGACCTGAATGCCATCCTTACGATTGTTGACG
CACATGACAACACTTTAAATGCCGCAGACTGTGCGCTGGCCTGGAAGTGC
CTGACCACCCGGGGGCCGCAGCCCTTCTCCTCGTCATTACGTGCCACAAA
TCTTCTTTCTTCCATGCATCTACTCTATTTATCTCAGGACAAGCGCTTCG
AACGCTTAATCCGGCGCACACGGGATCTGATTCCTGACCTTGAGCCCAGG
GAGTTGGCCGGAGTTCTTCGAACGCTGCCTCGGCTACTGCACATGCGGGG
GGGAGGGGAAAGCGCAAAGAGCCCCGGTAACGAAGACTTTGCCGAGCGCA
GCAAGACACATCAAGAAAGGGTCGCAAGGAGTCAGAGCCGGCAGCTAGAG
AGGCAGGCATCGAAGAGGATGGAGGCGTTCGTGGGCTCTCTGTACCAAGT
CCTGAGGTCACGCCTGACACGAAGTATGGGCCGATTGTCAGCCCAAGACC
TTGCCCTCGCCGTGAATGCGCTGAGCAAGCTTCCCCATCCCCCAGCCTCT
CTCTCCTCGAGGCATAGAGGTGGGCAACAAAGGAAGACCCAGGAGAAGGC
GGGGTTGGAGACAGGTAGAGGGGAGGTCGGCCAGGGAGACTTTGAAGCGG
CCTTGGTGGAGGCCGTCAGCAGTCGACTCGACGACTTCACCCCCCAGGGT
CTCGCCCTTATCCTCACGGCCCTACCCAAACTTTCCTACGGCATCAGCAG
CACTGAGCCGACGGGCGAGGGCCGGTCAGACCCAGGCTTCGGGCAGGGGC
CGGAGGACAAGGCCTTCCTCGCCCGGTATCGCGACACCGTGGCTCGCAAG
CTTGCCTCGGTGCCCTTCCTCCCTCAGGACCTCGCACTCCTGCTGAACGG
CTTCACCAACCTGGGCTTCCACCCGGGGCCGGAGTTCCTCCACCAGGTCT
CCCAGCGTGTCCAAGGTGTCTTGCCGGCGTGCAAGCCCCAGGACCTTGCC
CTCATGTGGAACAGCTACGCGAGGCTTTCTTGGCGCCCCCCCGCGGCGCA
TATGAGCGGTATGAGAGAGAGAGCTTTGGCGACCATGCCCACGTACCGGC
CGCAGGACTGGAGCAATACCCTACAGGCCATGGGAAAGATCCACTACTCG
CCCGGCGACGCCTTTTTGGCGGAGGCGACCCGGAGGATGGAGGTGGCCCT
TTCTCGGTTCAACCCGCACACCTTGGTCTGCACCGTGAACGCTTTTGCAT
TGCTGCAGTACCTGCCCCCCCTGCGGTTCAGGCTCCGGCTCCTATCGTGC
GTCCAGGAGGCTGTTGGGGCTCTGAAGGTGGAGGAGCTGTGCATCTTGCT
GCATTCCATAGGGCAGCTCCCAGCCTTGGCCATGGCGCAAGGCGGGTTGT
CGGGAGCAGGGGAAAGAGGGGAGATGCGGAGCCAGTTCTCGCACGGAGAG
AATCAGGACAGAAACCGTGAGGATATTTCGAGCAGTAGCAGACTCGATAC
ATGCGCCGAGGGCGAGCGAGAACCCATCGTTCCAATCCTTGTCGAGGCAC
TTGGGGGCCGCCTCGGCCTCCTCCGACCCAACAATCTCTCCCTGCTCCTC
CGAGCTTTGGCTCGCATCGACTTGTCCCCCTCAACAAATTTTCTTAGGGA
AGTTGAGGAGTGTGTGGAGGCCTCTCTTACCTCCTTTAACGGGATGGAGG
CAGCCTTGACCTTGCATGCCCTGGCACGGCTTTCCCCGAGTAAAGGGGGA
TCTGGCGATGACCCTGCCGAGGAGGAGGAGAGGGTAGGCCAGAGGTTGCA
GCACGGGACTTGTTCCCCCGTCATTCGCGCGCTGTACGAGCAGGTCTTGT
CCGACCGAGGCCACTTGGGCCCCCAGGAGGTCTGCCTCGTCTTGAACAGC
ATGGTGCGATTGGGCAGGCCCGGAGACGAGGTGGTCGATGGGCTGTGCGG
ACAGATGGAGTTGATTTTGTCCACGTCGGAGCAAGAGGGCGTCGTGGCAG
CCAAGGCCAACGAGGGAAGCCAAAGCAGGAGCAGCAGCGGCGGCAGGCCA
AGCCGTGGGCACGCTTTGTTTGCAGTGGAAGAAGACGGCGGGCGCGCGGA
GGAGGAAGGCTCTGGCTCTCTTTCCTCCCAAGGGCTTGCCTTGCTGGTGG
GTAGCTTTGGACATTTGGCCTACCTCCCGTCCCGCCGGCTGCAGGCACGT
TTATTGCATGTGTTGGACTGCCGGCTTCTGGATGGGAGTTTCGCACCAAG
GGATATCAGCATGAGTCTTCGAGGCTTAGCCAACATTCCCTCGTTCAGAA
CGGGAAGGAGGACGGGGGAGCTCGCCTTCGTGCCCACCATGACCCAGAAA
CTCGTGGAGGCGCTGGAAGGAGAAGGGACCTTCTCTCTGAATCTGGGTCC
TCAAGACGTGGCCATGGTCGTGAATGCCTTCGCCCGGATGCAAATGCGGG
CAGATGACCACCTGTTGGACAACTTGGCCGTGTCTCTCTTGGATCGCCTC
CCGCAAAGCGAGGGACAGGCCTTGGCATCGGTAATCAATGCCTTCGCCCG
CTTGAGGTACCATCCCGGACAAGGCTTCCTGGCCGCTTTTGAAGTTGAGG
TGCGACGTCGCATAGCCACATTGGATCTGTCCAGCCTCTGTCTGATTTTG
TGGTCCTTGGCGGTGATGGAGTCGAGTGCCTGTAGCAGCAGTAGTATGCC
CATCCGAAACGGAGCCTCGGGAGCCCGGTGGGAGGAAACTGACGGCACAT
CGGCCTCAGCCTTGTCTCCCGCTCTGTTGGAAGATGCCATTGCCGTGCGC
TTGCTACCAGAACTCAGAGCCCAACTCTCGCGTTTGGAGCTTGCCAGGTC
CGCGGTCGGGAAACAGATTGACTCGAACGAGGAGATTGATGGAATCGACG
CCGAGTCGCAGAGTAGTCATGTTCCAGGCCCCTCGTTGGCGCTGTCCGGC
CCCACCTTGAGCCAAAGAAGTCGTCCGTCTCCTCCTGTTCCTCGTCTGTC
CCCTGCCCTCCTGACACGGAGCCTCTGCCAAATCCTCCAGGTTTTGCTCT
ATACCTCCTCCTGCAGCTTTGCGCCGGCAGAACTTCGTGATATACCCGGT
TCCAAAGCTTTGTACAGCCTGGTGATCAGGGCGTGGGGGCACGTGGCTCA
TTTGCGGGAGCCGCCGGTGCCGTCGGCTTTGCATCAACAAGTAATGGGGA
CTTTGACCCTGGCGGGCGTCTCGTACAGGGCGGAGGAAAAAGTGTGCGAA
GGCACTTTCAGCCTGGACCTGGTCTTGTTTCCCAGGGGCAATTGCCGCAA
TTGCAGCAGCGATCGAAATAAAAGCGTCCTGGATGGTGAAGAGGCCTCTC
ACTCTAGCAGAGTCGCCCTGCCCGTGGTCGTCGAGGTGGACGGACCCTCT
CACTACATGGTGAACATGCCCGATATGCTGACGGGGGACACGATGTTCAA
GCGCCGCATGCTTTTGGGGCAGCGCAGCCTGAGAAAGGACGAGGGGGCGC
ATGCACCAAGTCAGCGATGGGCGGCTGTGCTCTCCTTGCTACTCTGGGAA
TGGGAGGAGGTGGGGCCGCGGTACCAGAACAAAATTGCCTTGTTGCGTCG
AAAGCTGAAAGCCGAAGGACTACGGCTTGAGGACTACATAAGCTGACGGG
GGAACCCGTGTGGTTTCAGGGGAAAAGATTTAGCGACGGAGATCCGTGGC
GGGGATAAGGGAGAGTCCCAAAGAGTGGGTGCGAGCATGAAACGCCGATT
GCGCGTAAGACGTGAGAAAATGGATAGCATTTATTTGTATCTTCTGAGAT
GAGAATTGTATTTCTAGAGAAGAATGGCACAACTTGTACAGAAAAATGAC
GTGAAAATAGCATTGAAGGAATTCCTGTAACCTGGTTCAGGTCCTCGAAG
TGACGCCTTTACCGTGCAGCTACGG

protein sequence of rna779

>rna779-protein ID=rna779-protein|Name=rna779|organism=Nannochloropsis gaditana|type=polypeptide|length=304bp
MPQATEEKEGSEDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFP
AICIEETSRIAVLSALSVDIKKSVQFLSSRDLPCLALTVGTCPRLGISLP
ASYPELRGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHLLPLI
QEMQSWLEELEKAGQETHKAASAQCVGGVAKFLVVCRCLIYFHHIINKHK
REFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIR
VRGEERELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFA
TLMK

mRNA from alignment at CM002456.1:394997..396181-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna779 ID=rna779|Name=rna779|organism=Nannochloropsis gaditana|type=mRNA|length=1185bp|location=Sequence derived from alignment at CM002456.1:394997..396181- (Nannochloropsis gaditana)
AAAAGCTAGCTTGTCTTGTTTACCATTAGGTCTGGTCTGTAACTGTGCGT
GTAGAAAGAAGGTATCAATGACCTTGAAAAGCCACAGTACGCCGTGTGTA
CATCAAGAGATCAATCCGGACATGCTTGAATAGTACACTGTTAGGGCCGC
TGCACAGAGCGAGGAGTGGTCGCCGGATAGGAGAGGAGGTTGGTCATATG
GCTTGTATATTTTCTCACGGCGCAGCGACTCCCACGCACAGACGGACGCA
TGCCGCAAGCTACCGAAGAGAAAGAAGGGAGTGAGGACGGTGTTGATTCG
GCGCTGTTGCGTGGGTGTTTGCAGCGGCAGCTAGATGAGCTGGAAGCACT
CGAACTAATTTACCCTCCCACGAGCCCCTCTTTTCCTCCTTCATTTCCAG
CCATTTGTATCGAAGAAACCTCCCGTATCGCAGTCCTATCAGCCTTATCT
GTGGATATAAAGAAGTCTGTCCAATTTCTTTCCTCCAGAGACTTGCCCTG
TCTCGCTTTGACTGTGGGCACCTGCCCCCGTCTAGGCATCTCGTTACCAG
CCTCCTACCCGGAGCTTCGAGGTTCCTTGCCAATCATCCGGTGGAAGGAA
GGAGGAAACCTGAGCACACTGGCCAAAAATGAAGCTATGCAGCGATTTAC
ATCTGTATCTTTATCGCACGACGGGGGGGAACATCTGTTGCCTCTAATAC
AAGAGATGCAAAGCTGGCTGGAAGAGCTAGAGAAAGCTGGACAGGAAACA
CACAAAGCCGCATCTGCGCAATGTGTTGGCGGCGTCGCAAAATTTCTCGT
TGTTTGCCGATGCTTGATTTATTTTCACCACATCATCAACAAGCACAAGA
GGGAATTTATCATTCGAGAGGCGCTGGCTCATAGTTTAGGAGGGTACTCG
AAGTATGGATGGCCAGGAGTAGTGGTGGTGGAGGGAGAAGAGCAGCAGGT
AAAAGCCTACGTTCGCTTGTTACAGAGTTTGCGCTGGAAAGAAATCCGCG
TCCGTGGCGAAGAGCGGGAGCTTTGTACAGGTGATCAGGGTGTGGATGAT
ATGCGACGGTTACATCGGGGGTTCGAAGAGCTTGATGAGAGGGGTCTCTC
TCTACTGGCACTTCGGCTACGAGAGGCCGGTTTGGGATCATTGTTTGCAA
CACTGATGAAATAAAAGTTTTTGTACCGTAGCTGC

Coding sequence (CDS) from alignment at CM002456.1:394997..396181-

>rna779 ID=rna779|Name=rna779|organism=Nannochloropsis gaditana|type=CDS|length=915bp|location=Sequence derived from alignment at CM002456.1:394997..396181- (Nannochloropsis gaditana)
ATGCCGCAAGCTACCGAAGAGAAAGAAGGGAGTGAGGACGGTGTTGATTC
GGCGCTGTTGCGTGGGTGTTTGCAGCGGCAGCTAGATGAGCTGGAAGCAC
TCGAACTAATTTACCCTCCCACGAGCCCCTCTTTTCCTCCTTCATTTCCA
GCCATTTGTATCGAAGAAACCTCCCGTATCGCAGTCCTATCAGCCTTATC
TGTGGATATAAAGAAGTCTGTCCAATTTCTTTCCTCCAGAGACTTGCCCT
GTCTCGCTTTGACTGTGGGCACCTGCCCCCGTCTAGGCATCTCGTTACCA
GCCTCCTACCCGGAGCTTCGAGGTTCCTTGCCAATCATCCGGTGGAAGGA
AGGAGGAAACCTGAGCACACTGGCCAAAAATGAAGCTATGCAGCGATTTA
CATCTGTATCTTTATCGCACGACGGGGGGGAACATCTGTTGCCTCTAATA
CAAGAGATGCAAAGCTGGCTGGAAGAGCTAGAGAAAGCTGGACAGGAAAC
ACACAAAGCCGCATCTGCGCAATGTGTTGGCGGCGTCGCAAAATTTCTCG
TTGTTTGCCGATGCTTGATTTATTTTCACCACATCATCAACAAGCACAAG
AGGGAATTTATCATTCGAGAGGCGCTGGCTCATAGTTTAGGAGGGTACTC
GAAGTATGGATGGCCAGGAGTAGTGGTGGTGGAGGGAGAAGAGCAGCAGG
TAAAAGCCTACGTTCGCTTGTTACAGAGTTTGCGCTGGAAAGAAATCCGC
GTCCGTGGCGAAGAGCGGGAGCTTTGTACAGGTGATCAGGGTGTGGATGA
TATGCGACGGTTACATCGGGGGTTCGAAGAGCTTGATGAGAGGGGTCTCT
CTCTACTGGCACTTCGGCTACGAGAGGCCGGTTTGGGATCATTGTTTGCA
ACACTGATGAAATAA

Synonyms

Publications