EWM29908.1, cds779 (CDS) Nannochloropsis gaditana

Overview
NameEWM29908.1
Unique Namecds779
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:395018..395932 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29908.1
Productconserved protein with yshh some fused to
Orig transcript idgnl|cribi|Naga_100035g40.3372.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:395018..395932 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR006575RWD-domain
IPR017359UCP038021_RWD
IPR010541DUF1115
IPR016135UBQ-conjugating_enzyme/RWD
Homology
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|585112491|gb|EWM29908.1| (conserved protein with yshh some fused to [Nannochloropsis gaditana])

HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 0
Query:    1 MPQATEEKEGSEDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALSVDIKKSVQFLSSRDLPCLALTVGTCPRLGISLPASYPELRGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHLLPLIQEMQSWLEELEKAGQETHKAASAQCVGGVAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEERELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            MPQATEEKEGSEDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALSVDIKKSVQFLSSRDLPCLALTVGTCPRLGISLPASYPELRGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHLLPLIQEMQSWLEELEKAGQETHKAASAQCVGGVAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEERELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK
Sbjct:    1 MPQATEEKEGSEDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALSVDIKKSVQFLSSRDLPCLALTVGTCPRLGISLPASYPELRGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHLLPLIQEMQSWLEELEKAGQETHKAASAQCVGGVAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEERELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|553196500|ref|XP_005856359.1| (conserved protein with yshh some fused to polo, partial [Nannochloropsis gaditana CCMP526] >gi|422292697|gb|EKU19999.1| conserved protein with yshh some fused to polo, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.889 bits (481), Expect = 7.211e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query:  160 LEKAGQETHKAASAQCVGGVAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIR 250
            LEKAGQETHKAASAQCVGGVAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIR
Sbjct:    1 LEKAGQETHKAASAQCVGGVAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIR 91          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|675179685|ref|XP_008898727.1| (hypothetical protein PPTG_06541 [Phytophthora parasitica INRA-310] >gi|568101710|gb|ETN16396.1| hypothetical protein PPTG_06541 [Phytophthora parasitica INRA-310])

HSP 1 Score: 129.413 bits (324), Expect = 1.184e-31
Identity = 106/318 (33.33%), Postives = 156/318 (49.06%), Query Frame = 0
Query:   12 EDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALS------------VDIKKSVQFLS---SRDLPCLALTVGTCPRLGISLPASYPEL-RGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHL--LPLIQEMQSWLEELEKAGQETHKAASAQCVGG---VAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEE----RELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            EDG  SA      Q+QL+ELE +  ++P            + I+E +++++   +S              I+ ++ +      R++P L L    CPR     P + P L   + P +   E G L+T            ++ +   G+ +  L L Q+M  +L +++       + + A  VG     +    + R  IYFHHII  +KR  +   A    LGG+SK GWPGVV+VEG E  V+ YVR LQ LRWK+I VRGE+    +E C+GD  +D +RRL R F E  E G+S LA   R+AGL  LF T MK
Sbjct:    7 EDGGLSAT-----QQQLEELECMRSMFPFDG--------ELKIDEATKVSLEDFVSGGSGADKSPRPERQIRYTLYYKDLAYGREVPSLTLM---CPR---RYPDAEPMLFEVNCPQLSRVEMGRLNT--------ELAELTATACAGQEVVGLQLYQQMHEFLTQVQAISTVDEQQSKAVTVGPSEETSTPPTLGRRAIYFHHIIASNKRRVVKEWATELRLGGFSKIGWPGVVIVEGAEPNVQEYVRRLQHLRWKQITVRGEQTEELQEGCSGD--IDSLRRLSRSFHEFPENGMSDLATACRDAGLEELFLTTMK 295          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|566008208|gb|ETI31119.1| (hypothetical protein F443_21844 [Phytophthora parasitica P1569] >gi|567945692|gb|ETK71503.1| hypothetical protein L915_21239 [Phytophthora parasitica] >gi|568033731|gb|ETM31425.1| hypothetical protein L914_20981 [Phytophthora parasitica] >gi|570311887|gb|ETO59835.1| hypothetical protein F444_21867 [Phytophthora parasitica P1976] >gi|570935681|gb|ETP00938.1| hypothetical protein F441_21726 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 127.487 bits (319), Expect = 5.856e-31
Identity = 106/318 (33.33%), Postives = 155/318 (48.74%), Query Frame = 0
Query:   12 EDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALS------------VDIKKSVQFLS---SRDLPCLALTVGTCPRLGISLPASYPEL-RGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHL--LPLIQEMQSWLEELEKAGQETHKAASAQCVGG---VAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEE----RELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            EDG  SA      Q+QL+ELE +  ++P            + I+E +++++   +S              I+ ++ +      R++P L L    CPR     P + P L   + P +   E G L+T            ++ +   G+ +  L L Q+M  +L +++         + A  VG     +    + R  IYFHHII  +KR  +   A    LGG+SK GWPGVV+VEG E  V+ YVR LQ LRWK+I VRGE+    +E C+GD  +D +RRL R F E  E G+S LA   R+AGL  LF T MK
Sbjct:    7 EDGGLSAT-----QQQLEELECMRSMFPFDG--------ELKIDEATKVSLEDFVSGGSGADKSPRPERQIRYTLYYKDLAYGREVPSLTLM---CPR---RYPDAEPMLFEVNCPQLSRVEMGRLNT--------ELAELTATACAGQEVVGLQLYQQMHEFLTQVQAISTVDELQSKAVTVGPSEETSTPPTLGRRAIYFHHIIASNKRRVVKEWATELRLGGFSKIGWPGVVIVEGAEPNVQEYVRRLQHLRWKQITVRGEQTEELQEGCSGD--IDSLRRLSRSFHEFPENGMSDLATACRDAGLEELFLTTMK 295          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|567974352|gb|ETL24947.1| (hypothetical protein L916_21106 [Phytophthora parasitica])

HSP 1 Score: 127.487 bits (319), Expect = 6.234e-31
Identity = 106/318 (33.33%), Postives = 155/318 (48.74%), Query Frame = 0
Query:   12 EDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALS------------VDIKKSVQFLS---SRDLPCLALTVGTCPRLGISLPASYPEL-RGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHL--LPLIQEMQSWLEELEKAGQETHKAASAQCVGG---VAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEE----RELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            EDG  SA      Q+QL+ELE +  ++P            + I+E +++++   +S              I+ ++ +      R++P L L    CPR     P + P L   + P +   E G L+T            ++ +   G+ +  L L Q+M  +L +++         + A  VG     +    + R  IYFHHII  +KR  +   A    LGG+SK GWPGVV+VEG E  V+ YVR LQ LRWK+I VRGE+    +E C+GD  +D +RRL R F E  E G+S LA   R+AGL  LF T MK
Sbjct:    7 EDGGLSAT-----QQQLEELECMRSMFPFDG--------ELKIDEATKVSLEDFVSGGSGADKSPRPERQIRYTLYYKDLAYGREVPSLTLM---CPR---RYPDAEPMLFEVNCPQLSRVEMGRLNT--------ELAELTATACAGQEVVGLQLYQQMHEFLTQVQAISTVDELQSKAVTVGPSEETSTPPTLGRRAIYFHHIIASNKRRVVKEWATELRLGGFSKIGWPGVVIVEGAEPNVQEYVRRLQHLRWKQITVRGEQTEELQEGCSGD--IDSLRRLSRSFHEFPENGMSDLATACRDAGLEELFLTTMK 295          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|570965956|gb|ETP29075.1| (hypothetical protein F442_21705 [Phytophthora parasitica P10297])

HSP 1 Score: 127.487 bits (319), Expect = 6.637e-31
Identity = 101/305 (33.11%), Postives = 150/305 (49.18%), Query Frame = 0
Query:   25 QRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALS------------VDIKKSVQFLS---SRDLPCLALTVGTCPRLGISLPASYPEL-RGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHL--LPLIQEMQSWLEELEKAGQETHKAASAQCVGG---VAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEE----RELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            Q+QL+ELE +  ++P            + I+E +++++   +S              I+ ++ +      R++P L L    CPR     P + P L   + P +   E G L+T            ++ +   G+ +  L L Q+M  +L +++         + A  VG     +    + R  IYFHHII  +KR  +   A    LGG+SK GWPGVV+VEG E  V+ YVR LQ LRWK+I VRGE+    +E C+GD  +D +RRL R F E  E G+S LA   R+AGL  LF T MK
Sbjct:   15 QQQLEELECMRSMFPFDG--------ELKIDEATKVSLEDFVSGGSGADKSPRPERQIRYTLYYKDLAYGREVPSLTLM---CPR---RYPDAEPMLFEVNCPQLSRVEMGRLNT--------ELAELTATACAGQEVVGLQLYQQMHEFLTQVQAISTVDELQSKAVTVGPSEETSTPPTLGRRAIYFHHIIASNKRRVVKEWATELRLGGFSKIGWPGVVIVEGAEPNVQEYVRRLQHLRWKQITVRGEQTEELQEGCSGD--IDSLRRLSRSFHEFPENGMSDLATACRDAGLEELFLTTMK 295          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|568003821|gb|ETL78162.1| (hypothetical protein L917_20964 [Phytophthora parasitica])

HSP 1 Score: 127.102 bits (318), Expect = 8.264e-31
Identity = 104/310 (33.55%), Postives = 150/310 (48.39%), Query Frame = 0
Query:   12 EDGVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALSVDIKKSVQFL-------SSRDLPCLALTVGTCPRLGISLPASYPEL-RGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHL--LPLIQEMQSWLEELEKAGQETHKAASAQCVGG---VAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEE----RELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            EDG  SA      Q+QL+ELE +  ++P            + +E+       +  S   ++ +++          R++P L L    CPR     P + P L   + P +   E G L+T            ++ +   G+ +  L L Q+M  +L +++         + A  VG     +    + R  IYFHHII  +KR  +   A    LGG+SK GWPGVV+VEG E  V+ YVR LQ LRWK+I VRGE+    +E C+GD  +D +RRL R F E  E G+S LA   R+AGL  LF T MK
Sbjct:    7 EDGGLSAT-----QQQLEELECMRSMFPFDGELKVDEATKVSLEDFVSGGSGADKSPRPERQIRYTLYYKDLAYGREVPSLTLM---CPR---RYPDAEPMLFEVNCPQLSRVEMGRLNT--------ELAELTATACAGQEVVGLQLYQQMHEFLTQVQAISTVDELQSKAVTVGPSEETSTPPTLGRRAIYFHHIIASNKRRVVKEWATELRLGGFSKIGWPGVVIVEGAEPNVQEYVRRLQHLRWKQITVRGEQTEELQEGCSGD--IDSLRRLSRSFHEFPENGMSDLATACRDAGLEELFLTTMK 295          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|873221186|emb|CEM34052.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 122.865 bits (307), Expect = 7.073e-29
Identity = 111/330 (33.64%), Postives = 148/330 (44.85%), Query Frame = 0
Query:   14 GVDSALLRGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEET--SRIAVLSALSVDIKKSVQFLSSRDLPCLALTVGTCPRLGISLPASYPE-------LRGSLPIIRWKEGGNLSTLAKNEAMQRFTS--VSLSHDGGEHLLPLIQEMQSWLEELEKAGQETHKAA----------------------------SAQCVGGVAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEERELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            G D   +  C +RQL+E+E L  +YP            + I+E   ++I      + D+  +V FL   DL     T G  P+L I+LP  YP        L   LP  R  E          E  +R     V +     + L  L+ E +   EELE A Q    AA                            SA       +   + R + Y HHI  + KR +II+ AL   LGG+SK G+PGVV+VEG E+    Y+  LQ LRWK   VRGEE       + +DDMRRL RGFEEL  +G+  +A   R+AGLG+LF T MK
Sbjct:   11 GSDYRDVSSCRRRQLEEIEVLMSMYPGPD--------ELIIDEVALTKIKSQEQSTDDLHFAVSFLDE-DLK----TEGESPQLCITLPPLYPHKSLRAELLSSYLPTHRLAECEEALKERAREWAERGEECVVDIVQSAKDSLADLVAEHRRETEELENALQAAQAAADDVADDDEEDDMSDDALAEELQLLELQASAAARPPAKQQQQLGRRVCYSHHIRAETKRRYIIQWALELRLGGFSKIGYPGVVIVEGPEEGCMEYITRLQRLRWKHFVVRGEEIIDVPASKCLDDMRRLPRGFEELGPKGMGRMADECRKAGLGALFLTCMK 327          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|970651043|gb|KUF89938.1| (Galactose-proton symporter [Phytophthora nicotianae])

HSP 1 Score: 125.561 bits (314), Expect = 1.380e-28
Identity = 83/221 (37.56%), Postives = 114/221 (51.58%), Query Frame = 0
Query:   93 PRLGISLPASYPELRGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHL--LPLIQEMQSWLEELEKAGQETHKAASAQCVGG---VAKFLVVCRCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEE----RELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            P L +  P  YP+     P++       LS +           ++ +   G+ +  L L Q+M  +L +++         + A  VG     +    + R  IYFHHII  +KR  +   A    LGG+SK GWPGVV+VEG E  V+ YVR LQ LRWK+I VRGE+    +E C+GD  +D +RRL R F E  E G+S LA   R+AGL  LF T MK
Sbjct:  504 PSLTLMCPRRYPDAE---PMLFEVNCPQLSRVEMGRLNTELAELTATACAGQEVVGLQLYQQMHEFLTQVQAISTVDELQSKAVTVGPSEETSTPPTLGRRAIYFHHIIASNKRRVVKEWATELRLGGFSKIGWPGVVIVEGAEPNVQEYVRRLQHLRWKQITVRGEQTEELQEGCSGD--IDSLRRLSRSFHEFPENGMSDLATACRDAGLEELFLTTMK 719          
BLAST of EWM29908.1 vs. NCBI_GenBank
Match: gi|669137286|ref|XP_008604211.1| (hypothetical protein SDRG_00509 [Saprolegnia diclina VS20] >gi|530744546|gb|EQC42788.1| hypothetical protein SDRG_00509 [Saprolegnia diclina VS20])

HSP 1 Score: 115.546 bits (288), Expect = 9.131e-27
Identity = 90/287 (31.36%), Postives = 135/287 (47.04%), Query Frame = 0
Query:   21 RGCLQRQLDELEALELIYPPTSPSFPPSFPAICIEETSRIAVLSALSVD-IKKSVQFLSSRDLPCLALTVGTCPRLGISLPASYPELRGSLPIIRWKEGGNLSTLAKNEAMQRFTSVSLSHDGGEHLLPLIQEMQSWLEELEKAGQETHKAASAQCVGGVAKFLVVC--RCLIYFHHIINKHKREFIIREALAHSLGGYSKYGWPGVVVVEGEEQQVKAYVRLLQSLRWKEIRVRGEERELCTGDQGVDDMRRLHRGFEELDERGLSLLALRLREAGLGSLFATLMK 304
            R  L++Q +ELE L  ++P        ++     E  +  +   A+++  +  +++F +        L     P L +  PA+YP    +  +        LS   K+  ++R  S++    G      L Q     L+E++    E H  A    +  +      C  R  IYFHHII   KR  +I  A    LGG+SK GWPGV++VEG+E  V  YVR LQ LRWK++ VRGE+ E        D +RRL     ELD+  +S+LA    +AG+  LF T MK
Sbjct:    8 RDHLRQQYEELECLRSMFPGDDELVIDAYVHAIYESAAAASGTEAITLPRLVATLRFQT-------CLIENAAPELELQYPATYPSSAMTFEL----RCPTLSRREKHSIVERLASIATDQVGEVVAFQLYQAAADILQEIQD---EAHLEAPVLALPPLVPIAQPCLGRRAIYFHHIIASSKRRVVIDWAKELHLGGFSKIGWPGVIIVEGDEPYVAEYVRRLQHLRWKQMVVRGEQVETSR-----DALRRLPTPLTELDD--MSILAAACADAGVTDLFLTTMK 273          
The following BLAST results are available for this feature:
BLAST of EWM29908.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112491|gb|EWM29908.1|0.000e+0100.00conserved protein with yshh some fused to [Nannoch... [more]
gi|553196500|ref|XP_005856359.1|7.211e-58100.00conserved protein with yshh some fused to polo, pa... [more]
gi|675179685|ref|XP_008898727.1|1.184e-3133.33hypothetical protein PPTG_06541 [Phytophthora para... [more]
gi|566008208|gb|ETI31119.1|5.856e-3133.33hypothetical protein F443_21844 [Phytophthora para... [more]
gi|567974352|gb|ETL24947.1|6.234e-3133.33hypothetical protein L916_21106 [Phytophthora para... [more]
gi|570965956|gb|ETP29075.1|6.637e-3133.11hypothetical protein F442_21705 [Phytophthora para... [more]
gi|568003821|gb|ETL78162.1|8.264e-3133.55hypothetical protein L917_20964 [Phytophthora para... [more]
gi|873221186|emb|CEM34052.1|7.073e-2933.64unnamed protein product [Vitrella brassicaformis C... [more]
gi|970651043|gb|KUF89938.1|1.380e-2837.56Galactose-proton symporter [Phytophthora nicotiana... [more]
gi|669137286|ref|XP_008604211.1|9.131e-2731.36hypothetical protein SDRG_00509 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna779rna779Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications