rna7786, rna7786 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7786
Unique Name	rna7786
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	691
Alignment location	CM002473.1:380591..382810 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100625g3.4758.mrna
Orig protein id	gnl\|cribi\|Naga_100625g3.4758
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:380591..382810 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100625g3	gene7542	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7786	rna7786-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22908.1	cds7765	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:380591..382810+
coding sequence from alignment at CM002473.1:380591..382810+

mRNA sequence

>rna7786 ID=rna7786|Name=rna7786|organism=Nannochloropsis gaditana|type=mRNA|length=691bp
ACAAGCACAGGCACTTTAAAGCGTTCATATCTACATAAGCATGAAGCTGT
CCATCCCTTCGCTTTTCCTGGCCTGTGCCGTCTTTACTTTAGGTAAAGGA
ACTGTCAATGCTGGCAGCATGCGTGGTGCAGAAAAGAAAGTGAACGGTGA
GAAATTAAAGATGCTGATTGACTGCTTCGCCAGTTATATGGAGGACGCCT
CCTACCGAGCTGATAACAGCAAACGGGATGGGTGCACCGACGCTGAGATC
CTCTACTGCCGTACAGACAGCGGCTACAACGACCACTTCTGCCGCTTTGA
CGGGACCAACAACCTCATTGACATGGGCGAGATCCCCCTTTTGGGGCCAC
AGGACGCGGTTCCCGAATGTTGGTTCAATTGCCAGATGGAGACTTGCAAC
GCATGGGAATTTCCCCACAACGAGGAGCAAGAAAAATGCGTGGCTGCTCT
TTAAGGGCGGAGGCTTCTTTGGCAAACAGCAAAAGGCGCGTGCCGTGGTT
CCACTTATGAGGTTTTTAGAGTGTTAGAGTGAAGTCTTCTTTTAAGGGGA
ATGGGTCGCGCTCGATTGTCTTGGTCCGAGACGATCTTCCCTTAAAGGAG
CAAATGAAAAAAGGTATACGCTGACAAAGATTTCAGCTGGCAATGCTCGA
AAGCATATCAAAGAAAGGCAAAACCTAAAGCATGACTAAGA

protein sequence of rna7786

>rna7786-protein ID=rna7786-protein|Name=rna7786|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MRVLLTLACLASCALTFTAAHSPYDTNGNDHDNQHHQQQPPPPGYSPNGM
PSGNNNSPPGPGNTNYPPTQGNNPYSPLQGSGNYPGAQTNGNYPPQAPGS
YPPNQGGSNYPPNQGAGPYSPAQPNGNYPSGQGNYPPGQGQGNYPQGSPY
GNQGGGSTGTYGPGGMGGGGQMPGGYPPMPNGNNNYPPNQAYPPQRAPMN
NYGPAGVGGMPMQGMQGGSPPGGMLKGGSASYPPAQGAAMNGSPVANTMQ
SNDPKASPVPPADPTKNGNSKDAVLSSLEQASAPVASSPATVPSRSTNLR
GGN

mRNA from alignment at CM002473.1:380591..382810+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7786 ID=rna7786|Name=rna7786|organism=Nannochloropsis gaditana|type=mRNA|length=2220bp|location=Sequence derived from alignment at CM002473.1:380591..382810+ (Nannochloropsis gaditana)
AAGCCCGACACCTGGGCTCTACAACTCGGTATTCGCTCGAATGCAAGGCG
CGTGTTTCCTCTTGACGTTTTCGTGGGCTTTGGTGTCTTTGAATACCATC
GTTGCAAGCATATTTAGACATAGATGCGTTGTGTGCACACGTTATTCTTG
GTAGCAACTGCCCCCGTGGCGAGTGCCATGCATGTCAGATTTTCTCAcca
tttttccctttttgccccctcccaggcATGCGCGTCCTACTCACGCTCGC
ATGTTTGGCATCTTGTGCGCTGACCTTCACCGCTGCCCATTCGCCTTACG
ACACAAATGGCAATGACCATGACAACCAGCATCATCAACaacaacctcct
ccgcctggatACTCCCCGAACGGCATGCCATCCGGGAACAACAACTCCCC
CCCTGGTCCAGGAAACACAAACTACCCGCCCACGCAAGGCAATAACCCCT
ATTCTCCCTTACAAGGGAGTGGGAACTACCCTGGAGCCCAGACCAATGGC
AATTATCCTCCGCAAGCCCCCGGCAGCTACCCTCCCAACCAGGGGGGCAG
CAACTACCCACCCAATCAGGGCGCAGGACCGTACTCTCCCGCGCAACCCA
ACGGCAATTACCCTTCAGGTCAAGGCAATTATCCTCCAGGCCAGGGACAA
GGAAACTATCCTCAAGGCTCGCCCTATGGGAATCAAGGCGGCGGCTCGAC
AGGCACCTATGGaccgggagggatgggggggggcgggcaaaTGCCTGGCG
GCTACCCGCCAATGCCCAATGGGAACAACAACTACCCACCCAACCAAGCC
TACCCGCCGCAGCGTGCTCCCATGAACAATTACGGCCCCGCCGGGGTTGG
GGGTATGCCGATGCAGGGCATGCAAGGCGGGTCCCCCCCGGGGGGGATGT
TGAAAGGAGGGTCTGCGAGCTACCCTCCTGCACAGGGGGCGGCGATGAAC
GGGAGCCCCGTCGCGAACACCATGCAGAGTAACGATCCGAAGGCCAGCCC
TGTTCCTCCCGCGGACCCGACAAAGAACGGAAATTCAAAAGGTGCGTTGT
CCAAACCGTAAATGAGCGGTGCGGGAGGGCCCcagggcaggggaggggga
ggaggagggaggatgcctCTTGTACGCTCACTATTATTTTGCTACCTTTT
GCGTTTTTGTGGTATGCAGATGCGGTGCTGTCGAGCTTAGAGCAGGCGTC
CGCTCCCGTCGCATCATCTCCGGCGACTgtcccctcccggtccacaaatt
gtcagtagggagggcgggagggaaggagggagggagaaaagggagaaaga
gcggggagggcagagaggtgGATTATTAGGTGGCGCCTTTTGATGCTGAG
ATAAGGATACTGCATTGTGAGGGTAATGTGATGGTGCGGTagagagggtg
aggggggaaTCGAGGGAAACGTGAGCGGATGCAGGTTATGTTCGGAGGAG
ACGATGGCGATGGCTCATGGATGGGTGGACAGTGAGGGTATGATATGAAA
AGGCTGGCCTTCGTCGatcgtgaggaggaggatgaataGTGGTCGTGAGT
GGGACGCGGAGGGTCATTTGCTAAGCCTCTTGTATTTATGGCATCGAGTC
CTACTCTAAAAGCGATGAATGTACCAATTCACTCACATCGATTTCCATTC
CCCTACCGCAGTACGAGGAGGGAATTAGCAAAGCATCCGATGCTGTAGCC
CTCTGGCATGAGATAGGTAACCCTCGCGGGGCGCGGCTGTATGGATGCAA
TGCGCGCGACCCAGGTTGGTTGGATGGGCCATTGATTTGAGCCAGCATGG
GGGCATGGGGTGAAAAGTGAGGCGTTGTTTGATTTTAGGTGCCCGCGGTG
TATAGAGTGTTGATGCCTCACAGGACGTTCTTCAGGATGAGGATAAAACA
AGGTCGTTGTGGGTTTGAGGGTTGGGTTCACAGGTCTGAATTATGAACAA
AACTATCTACGACTATAGCACATCCGTGTGAGACTGCATGTTTTGTTGTT
TGGAGTTCACGAGCAAGTCATGATGCCGAACTTCTATCCCTTATGTGAAT
CGAAGCTAcgaatgggagggaaggaggagcacatAAGGGAATAGGAAAGA
GTGCGTGGGGTCGATGCATTTATTTGTTGAACGCGCGGCCACCTCAGCAC
GCAATATTGAAAGAACGACGTAAATTGATTGCAGACTTTTCGCTTCAGTT
GCTTCTTCGAAGCGGTGGCC

Coding sequence (CDS) from alignment at CM002473.1:380591..382810+

>rna7786 ID=rna7786|Name=rna7786|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at CM002473.1:380591..382810+ (Nannochloropsis gaditana)
ATGCGCGTCCTACTCACGCTCGCATGTTTGGCATCTTGTGCGCTGACCTT
CACCGCTGCCCATTCGCCTTACGACACAAATGGCAATGACCATGACAACC
AGCATCATCAACaacaacctcctccgcctggatACTCCCCGAACGGCATG
CCATCCGGGAACAACAACTCCCCCCCTGGTCCAGGAAACACAAACTACCC
GCCCACGCAAGGCAATAACCCCTATTCTCCCTTACAAGGGAGTGGGAACT
ACCCTGGAGCCCAGACCAATGGCAATTATCCTCCGCAAGCCCCCGGCAGC
TACCCTCCCAACCAGGGGGGCAGCAACTACCCACCCAATCAGGGCGCAGG
ACCGTACTCTCCCGCGCAACCCAACGGCAATTACCCTTCAGGTCAAGGCA
ATTATCCTCCAGGCCAGGGACAAGGAAACTATCCTCAAGGCTCGCCCTAT
GGGAATCAAGGCGGCGGCTCGACAGGCACCTATGGaccgggagggatggg
ggggggcgggcaaaTGCCTGGCGGCTACCCGCCAATGCCCAATGGGAACA
ACAACTACCCACCCAACCAAGCCTACCCGCCGCAGCGTGCTCCCATGAAC
AATTACGGCCCCGCCGGGGTTGGGGGTATGCCGATGCAGGGCATGCAAGG
CGGGTCCCCCCCGGGGGGGATGTTGAAAGGAGGGTCTGCGAGCTACCCTC
CTGCACAGGGGGCGGCGATGAACGGGAGCCCCGTCGCGAACACCATGCAG
AGTAACGATCCGAAGGCCAGCCCTGTTCCTCCCGCGGACCCGACAAAGAA
CGGAAATTCAAAAGATGCGGTGCTGTCGAGCTTAGAGCAGGCGTCCGCTC
CCGTCGCATCATCTCCGGCGACTgtcccctcccggtccacaaattTACGA
GGAGGGAATTAGATGCGCGTCCTACTCACGCTCGCATGTTTGGCATCTTG
TGCGCTGACCTTCACCGCTGCCCATTCGCCTTACGACACAAATGGCAATG
ACCATGACAACCAGCATCATCAACaacaacctcctccgcctggatACTCC
CCGAACGGCATGCCATCCGGGAACAACAACTCCCCCCCTGGTCCAGGAAA
CACAAACTACCCGCCCACGCAAGGCAATAACCCCTATTCTCCCTTACAAG
GGAGTGGGAACTACCCTGGAGCCCAGACCAATGGCAATTATCCTCCGCAA
GCCCCCGGCAGCTACCCTCCCAACCAGGGGGGCAGCAACTACCCACCCAA
TCAGGGCGCAGGACCGTACTCTCCCGCGCAACCCAACGGCAATTACCCTT
CAGGTCAAGGCAATTATCCTCCAGGCCAGGGACAAGGAAACTATCCTCAA
GGCTCGCCCTATGGGAATCAAGGCGGCGGCTCGACAGGCACCTATGGacc
gggagggatgggggggggcgggcaaaTGCCTGGCGGCTACCCGCCAATGC
CCAATGGGAACAACAACTACCCACCCAACCAAGCCTACCCGCCGCAGCGT
GCTCCCATGAACAATTACGGCCCCGCCGGGGTTGGGGGTATGCCGATGCA
GGGCATGCAAGGCGGGTCCCCCCCGGGGGGGATGTTGAAAGGAGGGTCTG
CGAGCTACCCTCCTGCACAGGGGGCGGCGATGAACGGGAGCCCCGTCGCG
AACACCATGCAGAGTAACGATCCGAAGGCCAGCCCTGTTCCTCCCGCGGA
CCCGACAAAGAACGGAAATTCAAAAGATGCGGTGCTGTCGAGCTTAGAGC
AGGCGTCCGCTCCCGTCGCATCATCTCCGGCGACTgtcccctcccggtcc
acaaattTACGAGGAGGGAATTAGATGCGCGTCCTACTCACGCTCGCATG
TTTGGCATCTTGTGCGCTGACCTTCACCGCTGCCCATTCGCCTTACGACA
CAAATGGCAATGACCATGACAACCAGCATCATCAACaacaacctcctccg
cctggatACTCCCCGAACGGCATGCCATCCGGGAACAACAACTCCCCCCC
TGGTCCAGGAAACACAAACTACCCGCCCACGCAAGGCAATAACCCCTATT
CTCCCTTACAAGGGAGTGGGAACTACCCTGGAGCCCAGACCAATGGCAAT
TATCCTCCGCAAGCCCCCGGCAGCTACCCTCCCAACCAGGGGGGCAGCAA
CTACCCACCCAATCAGGGCGCAGGACCGTACTCTCCCGCGCAACCCAACG
GCAATTACCCTTCAGGTCAAGGCAATTATCCTCCAGGCCAGGGACAAGGA
AACTATCCTCAAGGCTCGCCCTATGGGAATCAAGGCGGCGGCTCGACAGG
CACCTATGGaccgggagggatgggggggggcgggcaaaTGCCTGGCGGCT
ACCCGCCAATGCCCAATGGGAACAACAACTACCCACCCAACCAAGCCTAC
CCGCCGCAGCGTGCTCCCATGAACAATTACGGCCCCGCCGGGGTTGGGGG
TATGCCGATGCAGGGCATGCAAGGCGGGTCCCCCCCGGGGGGGATGTTGA
AAGGAGGGTCTGCGAGCTACCCTCCTGCACAGGGGGCGGCGATGAACGGG
AGCCCCGTCGCGAACACCATGCAGAGTAACGATCCGAAGGCCAGCCCTGT
TCCTCCCGCGGACCCGACAAAGAACGGAAATTCAAAAGATGCGGTGCTGT
CGAGCTTAGAGCAGGCGTCCGCTCCCGTCGCATCATCTCCGGCGACTgtc
ccctcccggtccacaaattTACGAGGAGGGAATTAG

Synonyms

Publications