EWM22908.1, cds7765 (CDS) Nannochloropsis gaditana

Overview
NameEWM22908.1
Unique Namecds7765
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:380818..381631 +
Alignment locationCM002473.1:381760..381840 +
Alignment locationCM002473.1:382252..382268 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM22908.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100625g3.4758.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:380818..381631 +
CM002473.1supercontigCM002473.1:381760..381840 +
CM002473.1supercontigCM002473.1:382252..382268 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM22908.1 vs. NCBI_GenBank
Match: gi|585103586|gb|EWM22908.1| (hypothetical protein Naga_100625g3 [Nannochloropsis gaditana])

HSP 1 Score: 556.984 bits (1434), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query:    1 MRVLLTLACLASCALTFTAAHSPYDTNGNDHDNQHHQQQPPPPGYSPNGMPSGNNNSPPGPGNTNYPPTQGNNPYSPLQGSGNYPGAQTNGNYPPQAPGSYPPNQGGSNYPPNQGAGPYSPAQPNGNYPSGQGNYPPGQGQGNYPQGSPYGNQGGGSTGTYGPGGMGGGGQMPGGYPPMPNGNNNYPPNQAYPPQRAPMNNYGPAGVGGMPMQGMQGGSPPGGMLKGGSASYPPAQGAAMNGSPVANTMQSNDPKASPVPPADPTKNGNSKDAVLSSLEQASAPVASSPATVPSRSTNLRGGN 303
            MRVLLTLACLASCALTFTAAHSPYDTNGNDHDNQHHQQQPPPPGYSPNGMPSGNNNSPPGPGNTNYPPTQGNNPYSPLQGSGNYPGAQTNGNYPPQAPGSYPPNQGGSNYPPNQGAGPYSPAQPNGNYPSGQGNYPPGQGQGNYPQGSPYGNQGGGSTGTYGPGGMGGGGQMPGGYPPMPNGNNNYPPNQAYPPQRAPMNNYGPAGVGGMPMQGMQGGSPPGGMLKGGSASYPPAQGAAMNGSPVANTMQSNDPKASPVPPADPTKNGNSKDAVLSSLEQASAPVASSPATVPSRSTNLRGGN
Sbjct:    1 MRVLLTLACLASCALTFTAAHSPYDTNGNDHDNQHHQQQPPPPGYSPNGMPSGNNNSPPGPGNTNYPPTQGNNPYSPLQGSGNYPGAQTNGNYPPQAPGSYPPNQGGSNYPPNQGAGPYSPAQPNGNYPSGQGNYPPGQGQGNYPQGSPYGNQGGGSTGTYGPGGMGGGGQMPGGYPPMPNGNNNYPPNQAYPPQRAPMNNYGPAGVGGMPMQGMQGGSPPGGMLKGGSASYPPAQGAAMNGSPVANTMQSNDPKASPVPPADPTKNGNSKDAVLSSLEQASAPVASSPATVPSRSTNLRGGN 303          
BLAST of EWM22908.1 vs. NCBI_GenBank
Match: gi|565404653|ref|XP_006367746.1| (PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Solanum tuberosum])

HSP 1 Score: 71.2478 bits (173), Expect = 3.866e-10
Identity = 53/151 (35.10%), Postives = 70/151 (46.36%), Query Frame = 0
Query:    1 MRVLLTLACLASCALTFTAAHSP---YDTNGNDHDNQHHQQQPPPPGYSPNGMPSGNNNSPPGPGNTNYPPTQGNNPYSPLQGSGNYPGAQTNGNYPPQA-PGSYPPNQGGSNYPPNQGAGPYSPAQPNGNYP--SGQGNYPPGQGQGNYP 145
            ++VL  L  +      F    S    ++ N N    Q  + +P       N    G  + PP  G  +YPP  G   Y P  G G+YP     G+YPP++  G YPP  G  +YPP  G G Y P    G+YP  SG G+YPP  G G+YP
Sbjct:  205 LKVLKALESVIGHLRKFLVDQSVLPLFEKNYNTPSVQERETEPWSERTMLNTSRPGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYP 355          

HSP 2 Score: 66.2402 bits (160), Expect = 1.475e-8
Identity = 44/97 (45.36%), Postives = 54/97 (55.67%), Query Frame = 0
Query:   52 SGNNNSPPGPGNTNYPPTQGNNPYSPLQGSGNYPGAQTNGNYPPQA-PGSYPPNQGGSNYPPNQGAGPYSPAQPNGNYP--SGQGNYPPGQGQGNYP 145
            SG  + PP  G  +YPP  G   Y P  G G+YP     G+YPP++  G YPP  G  +YPP  G G Y P    G+YP  SG G+YPP  G G+YP
Sbjct:  277 SGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYPPRSGLGDYP 373          
The following BLAST results are available for this feature:
BLAST of EWM22908.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585103586|gb|EWM22908.1|0.000e+0100.00hypothetical protein Naga_100625g3 [Nannochloropsi... [more]
gi|565404653|ref|XP_006367746.1|3.866e-1035.10PREDICTED: RNA-binding KH domain-containing protei... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7786rna7786Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications