rna7778, rna7778 (mRNA) Nannochloropsis gaditana

Overview
Namerna7778
Unique Namerna7778
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1263
Alignment locationCM002473.1:359941..360679 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102593g1.7627.mrna
Orig protein idgnl|cribi|Naga_102593g1.7627
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:359941..360679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102593g1gene7534Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22916.1cds7757Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7778rna7778-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7778 ID=rna7778|Name=rna7778|organism=Nannochloropsis gaditana|type=mRNA|length=1263bp
ATGAGGAATCACGCACGGCACCGCGCGGTCTGCCTCCTCTTCGCGGCCCT
GGGGGCCATGGCCCAGCGCCAGGAAGCTGCGTCCACCCGGTCGTCCCCTT
CCGCCCTTCGAGGGCCAGATGATCCTTTAACCCCCCCGCGGGCGTTGCAG
ACATGGACGTTACCTGGCGGCGTCACGGTGGGCATTGGCCCAAACGGCAT
CACCATCAACCCTCCCGCCCCGGAGTATCCGCCCCCGCCCCCGCCAGCGC
CTCCGAAGCCGACCTCGCCTCCCAAGGAAGCACCGCCACAGGCGGCTCCT
AAAGTAATCCCTTCCCCGGTTATACCCAAAGCTGCTCTGCCTCCTCCCCC
TTCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCCTCCTCCTCCCAAACCAG
TTGTTCCTGCCCTGGGAGGGGTGACATGCGCGTCCTTGGGGGATACGGAC
AATTACAACGCGGTCCAGGACCCCACGTGCACCGCTTTCCTTGCCCAGTA
CTACGAGCACGCTCGCATGTTCGCGGGCTTTGCGTCCGACGAACAAGGGA
AATTTATGGAGGAATTCTGTCGTCCTCCCCCAGCCTCCTCCCTCTCTTGC
GGCCAGTCCCTGACCATGGTCTTGGAAGCGGAACGCTTGGGCTGTGCGCT
GCCCCCTCCTCGGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCTT
CCCTCCCTCCCTCCCCTCCCACGGAGACACGACAAGCGCCCCCCACTCCA
CCCCTGTCGACCCCTGGGAACGACATTGTCGTCCCGCCCGATGCCGCCGC
CGCCGCCGCCGCGGCGGTTACGGCGCACGGCGCACCCGAGCCGTTGGATA
CCACGCCCGTTACAATTCAAACGGCCAACGGTCCCGTGGCCGCCCCTCCC
ACAACGGGCGGGCAGAAGGAGGCAATGGCAGTGGAAAAAGCGGCCGCCAA
AAAGGACGAAACCCCGCAGACGGGGCGCAAGAATGTGACGGAAGGAATGA
ATTCGAAAGCTTTTCCCTTTGACTACCCCGGTTTGCGTTTGGGGTGCATC
ACGGACCCGACAGGCGGTTACTGCGCCATGAAACGGGCGGCCGTTCCGTC
GGAGCCGTTGGGACGGACGGAAACGGCGTGCGACTTCTTTTTGTCGTGCT
GCTACGCGCAGTATGATCGTATGCACTTTGATGGCTTGCCTCCCGTGGAG
GAAATCGAGACAGCCTGTCCAGGTGCCAAAGCAGCCCTGCGGGGACCGGT
ATGTACGGTCTGA
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protein sequence of rna7778

>rna7778-protein ID=rna7778-protein|Name=rna7778|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
SHPSYIHDRLEDLEICSITDEMQHVLTLIHRKVPPSLPPSLSPSLPPSLP
LSFSPLSPPSTPFARLSPPVPRLFSLKSEPNIFMDVVQRPMAPPSVPPSV
PPSVPPSVPPSVPPSVPPSVPPSVPPSVRPSVPPSVPPSVPSQISSLMAV
LRNKHHLSFSMNAASITLYQVLQQTQRANGLGYQQEVSFPPSPLSLRSFS
SFFYATHVTRVSHQD
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mRNA from alignment at CM002473.1:359941..360679-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7778 ID=rna7778|Name=rna7778|organism=Nannochloropsis gaditana|type=mRNA|length=739bp|location=Sequence derived from alignment at CM002473.1:359941..360679- (Nannochloropsis gaditana)
TCCCATCCCAGCTACATCCACGACCGCCTGGAAGATTTGGAGATCTGCTC
TATCACAGACGAGATGCAGCACGTCCTCACCCTGATCCATCGAAAGGTCC
CTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCT
CTCTCCTTTTCCCCTCTGTCTCCTCCCTCCACCCCCTTTGCCCGACTCTC
GCCACCCGTTCCCCGCTTGTTCTCTCTTAAATCTGAGCCAAATATATTCA
TGGATGTCGTCCAACGCCCAATGGCCCCTCCCTCCGTCCCTCCCTCCGTC
CCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCC
TCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCGTCCCTCCGTCCCTC
CCTCCGTCCCGCCCTCCGTCCCTTCTCAGATAAGTTCACTCATGGCCGTC
CTCCGTAACAAGCACCACCTTTCCTTCTCCATGAATGCTGCCTCTATCAC
CCTCTATCAAGTCCTGCAGCAGACTCAGCGAGCGAATGGGCTTGGGTACC
AGCAAGAGGTATCCTTCCCTCCCTCCCCCCTTTCCCTTCGCTCGTTCTCT
TCGTTTTTCTACGCCACTCATGTGACGCGAGTCTCGCATCAAGATTGATG
AAAATTCATTATGAAGTTATATTGCGAAGATTCATTGTAAAGATTCACTC
AAGATATTCCCACGGGCTCCTACTCTGGGCGCTCATTCC
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Coding sequence (CDS) from alignment at CM002473.1:359941..360679-

>rna7778 ID=rna7778|Name=rna7778|organism=Nannochloropsis gaditana|type=CDS|length=648bp|location=Sequence derived from alignment at CM002473.1:359941..360679- (Nannochloropsis gaditana)
TCCCATCCCAGCTACATCCACGACCGCCTGGAAGATTTGGAGATCTGCTC
TATCACAGACGAGATGCAGCACGTCCTCACCCTGATCCATCGAAAGGTCC
CTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCT
CTCTCCTTTTCCCCTCTGTCTCCTCCCTCCACCCCCTTTGCCCGACTCTC
GCCACCCGTTCCCCGCTTGTTCTCTCTTAAATCTGAGCCAAATATATTCA
TGGATGTCGTCCAACGCCCAATGGCCCCTCCCTCCGTCCCTCCCTCCGTC
CCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCC
TCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCGTCCCTCCGTCCCTC
CCTCCGTCCCGCCCTCCGTCCCTTCTCAGATAAGTTCACTCATGGCCGTC
CTCCGTAACAAGCACCACCTTTCCTTCTCCATGAATGCTGCCTCTATCAC
CCTCTATCAAGTCCTGCAGCAGACTCAGCGAGCGAATGGGCTTGGGTACC
AGCAAGAGGTATCCTTCCCTCCCTCCCCCCTTTCCCTTCGCTCGTTCTCT
TCGTTTTTCTACGCCACTCATGTGACGCGAGTCTCGCATCAAGATTGA
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Synonyms
Publications