rna7773, rna7773 (mRNA) Nannochloropsis gaditana

Overview
Namerna7773
Unique Namerna7773
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length225
Alignment locationCM002473.1:343667..344944 -

Link to JBrowse

Properties
Property NameValue
Producttrna-dihydrouridine synthase a
Orig transcript idgnl|cribi|Naga_101147g2.1290.mrna
Orig protein idgnl|cribi|Naga_101147g2.1290
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:343667..344944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101147g2gene7529Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7773rna7773-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22921.1cds7752Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7773 ID=rna7773|Name=rna7773|organism=Nannochloropsis gaditana|type=mRNA|length=225bp
ATGACCATGAGGGACTACACGGAAGACGCAGACCCCACTGTCGGGGGGGC
GGGGTGCCGCCCAGGGCTCAGCAGGAGCAACATTAGGAGAAGACGACAGC
ACGCTTCTTTCCGTGCATTAAGCGCGTCGGCAATCACGTTGACGTTGGCC
AGTATGCTCATCAGCCTTCCTCTGGCCTTTTCCTCAACCTCCCCCCCTCC
CTCCCTCCCTTCCTTCCTTCCTTGA
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protein sequence of rna7773

>rna7773-protein ID=rna7773-protein|Name=rna7773|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MAACDGEEDRHARQLDILPVSFRDAFDESCGNLKPAHTLSIAPMMEWTDR
HYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLG
GSDPVQVGEAAALCEAYGGFNEINLNVRYASR
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mRNA from alignment at CM002473.1:343667..344944-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7773 ID=rna7773|Name=rna7773|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp|location=Sequence derived from alignment at CM002473.1:343667..344944- (Nannochloropsis gaditana)
GCTGCGGTAACATTTGAGCTTGGATTCCGTTAGAGGAGGTGCCACTCAAT
GTATGTTCAAGTATCCAGCATCTTCCATCGCGTCTCCGGCATCACCATAG
TCATCTCGTGACCCGCAGCATGGCAGCTTGTGATGGCGAAGAAGACCGCC
ATGCAAGGCAACTGGACATATTGCCCGTCTCTTTCCGAGATGCTTTTGAC
GAAAGTTGTGGAAACCTAAAACCTGCCCACACCCTGTCAATAGCGCCCAT
GGTACGGTAATCCGTCTTGTCTTTGTCTCCCCTTCCGTGTCGACCAGCAA
GTTTCCATCGACAACGACACATATTTTACATGTTGATCTGTCATACATTT
ATTGTGCGTCTCTTTGTGTCCTTAGGGACCTCTGCTTCGGCTTCAATCAA
ATGTGCCTGCGATCTTTGTTCTCTGACAGAGTATCCATCTTCTTTTGTCA
TGTCGTCTGTTTGTTGCAGTCTCTTTCCCTTCTGATCATTCTCCTTCACA
GGCACATTATAGTCCAGAACTGACGCCACTGAGTATGGATTTATTTTTTC
TCCCTCTGTCCTTTATGCTGATACTTCACATTGTGTGCACGATTCGTTCT
TCACGGACCATTTAATCCCCCCCCCCCCATTAGATGGAATGGACAGACCG
GCATTACCGATACATGATGCGGGGCTTGACACGACACACGCAGCTTTACA
CGGAAATGATCGTCGACAGCACGGTGCGTGGTCTCCCTTTCATCCCGCCT
TTCTGGTGCCTTCCCTTTGTCTGTGCGTGCGGTCGTCGCTGTCTACCTCC
GGGTAGGCAAGGCGTGGGAACAGGACACCTGACTCTAGCGTTTGGCTCTT
GGTGAGAGACAGAAATGGCTCGCATTGTGAACGCCCAAATTCATCCATGA
TTATCCTCCCGCCCCCCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCACCCAGCTCCTCCATCGCCGGGAGGACCTA
GACATCTTCCTGGGTCATGACGAGTGCGAACATCCCTTAGCCGTCCAATT
AGGCGGGTCCGATCCGGTCCAAGTCGGAGAAGCCGCCGCTCTCTGCGAAG
CCTACGGCGGTTTCAACGAGATCAATTTGAATGTCCGTTACGCTTCTCGA
TAACGGATCAATGACCTTTACAGGGTTATGCCTACCTTCTCTTGACGCTT
TTTTAGTTAGCCCTCTTCTGTCTGTCCGTGTGGGTGCGGTGGCTGCGAAG
ACTCTCTCCCATCCTCATTCACCACCCC
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Coding sequence (CDS) from alignment at CM002473.1:343667..344944-

>rna7773 ID=rna7773|Name=rna7773|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002473.1:343667..344944- (Nannochloropsis gaditana)
CTCCTCCATCGCCGGGAGGACCTAGACATCTTCCTGGGTCATGACGAGTG
CGAACATCCCTTAGCCGTCCAATTAGGCGGGTCCGATCCGGTCCAAGTCG
GAGAAGCCGCCGCTCTCTGCGAAGCCTACGGCGGTTTCAACGAGATCAAT
TTGAATGTCCGTTACGCTTCTCGATAAATGGAATGGACAGACCGGCATTA
CCGATACATGATGCGGGGCTTGACACGACACACGCAGCTTTACACGGAAA
TGATCGTCGACAGCACGATGGCAGCTTGTGATGGCGAAGAAGACCGCCAT
GCAAGGCAACTGGACATATTGCCCGTCTCTTTCCGAGATGCTTTTGACGA
AAGTTGTGGAAACCTAAAACCTGCCCACACCCTGTCAATAGCGCCCATGC
TCCTCCATCGCCGGGAGGACCTAGACATCTTCCTGGGTCATGACGAGTGC
GAACATCCCTTAGCCGTCCAATTAGGCGGGTCCGATCCGGTCCAAGTCGG
AGAAGCCGCCGCTCTCTGCGAAGCCTACGGCGGTTTCAACGAGATCAATT
TGAATGTCCGTTACGCTTCTCGATAAATGGAATGGACAGACCGGCATTAC
CGATACATGATGCGGGGCTTGACACGACACACGCAGCTTTACACGGAAAT
GATCGTCGACAGCACGATGGCAGCTTGTGATGGCGAAGAAGACCGCCATG
CAAGGCAACTGGACATATTGCCCGTCTCTTTCCGAGATGCTTTTGACGAA
AGTTGTGGAAACCTAAAACCTGCCCACACCCTGTCAATAGCGCCCATGCT
CCTCCATCGCCGGGAGGACCTAGACATCTTCCTGGGTCATGACGAGTGCG
AACATCCCTTAGCCGTCCAATTAGGCGGGTCCGATCCGGTCCAAGTCGGA
GAAGCCGCCGCTCTCTGCGAAGCCTACGGCGGTTTCAACGAGATCAATTT
GAATGTCCGTTACGCTTCTCGATAAATGGAATGGACAGACCGGCATTACC
GATACATGATGCGGGGCTTGACACGACACACGCAGCTTTACACGGAAATG
ATCGTCGACAGCACGATGGCAGCTTGTGATGGCGAAGAAGACCGCCATGC
AAGGCAACTGGACATATTGCCCGTCTCTTTCCGAGATGCTTTTGACGAAA
GTTGTGGAAACCTAAAACCTGCCCACACCCTGTCAATAGCGCCCATG
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Synonyms
Publications