EWM22921.1, cds7752 (CDS) Nannochloropsis gaditana

Overview
NameEWM22921.1
Unique Namecds7752
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:344694..344825 -
Alignment locationCM002473.1:344222..344311 -
Alignment locationCM002473.1:343792..343968 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22921.1
Producttrna-dihydrouridine synthase a
Orig transcript idgnl|cribi|Naga_101147g2.1290.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:344694..344825 -
CM002473.1supercontigCM002473.1:344222..344311 -
CM002473.1supercontigCM002473.1:343792..343968 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0055114oxidation-reduction process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:0017150tRNA dihydrouridine synthase activity
GO:0050660flavin adenine dinucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR013785Aldolase_TIM
IPR001269tRNA_hU_synthase
Homology
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|585103617|gb|EWM22921.1| (trna-dihydrouridine synthase a [Nannochloropsis gaditana])

HSP 1 Score: 277.33 bits (708), Expect = 1.363e-94
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0
Query:    1 MAACDGEEDRHARQLDILPVSFRDAFDESCGNLKPAHTLSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNVRYASR 132
            MAACDGEEDRHARQLDILPVSFRDAFDESCGNLKPAHTLSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNVRYASR
Sbjct:    1 MAACDGEEDRHARQLDILPVSFRDAFDESCGNLKPAHTLSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNVRYASR 132          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|698779661|ref|XP_009822874.1| (hypothetical protein H257_01396 [Aphanomyces astaci] >gi|574122535|gb|ETV88011.1| hypothetical protein H257_01396 [Aphanomyces astaci])

HSP 1 Score: 138.658 bits (348), Expect = 4.135e-37
Identity = 60/89 (67.42%), Postives = 76/89 (85.39%), Query Frame = 0
Query:   39 LSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            LS+APMM+WTDRHYRYMMR +TR T LYTEM+VD+TL+H++ +LD FLGHD  EHPLA+QLGGS+P  +GE A + E+YG F+EIN+NV
Sbjct:   14 LSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDATLMHQKHNLDYFLGHDSLEHPLALQLGGSNPAMLGEVAKMAESYGSFHEININV 102          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|669164844|ref|XP_008617984.1| (hypothetical protein SDRG_13663 [Saprolegnia diclina VS20] >gi|530730345|gb|EQC28587.1| hypothetical protein SDRG_13663 [Saprolegnia diclina VS20])

HSP 1 Score: 134.035 bits (336), Expect = 2.270e-35
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 0
Query:   39 LSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            LS+APMM+WTDRHYR+MMR +TR T LYTEM+VD TLLH++++LD FLGHD+ EHPLA+QLGG+D   +G  A + E YG F+EINLNV
Sbjct:   15 LSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQKDNLDYFLGHDDIEHPLALQLGGNDVKSLGTVARMAETYGNFHEINLNV 103          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|673032372|ref|XP_008870147.1| (hypothetical protein, variant 3 [Aphanomyces invadans] >gi|574474147|gb|ETW01149.1| hypothetical protein, variant 3 [Aphanomyces invadans])

HSP 1 Score: 131.724 bits (330), Expect = 2.556e-35
Identity = 57/89 (64.04%), Postives = 75/89 (84.27%), Query Frame = 0
Query:   39 LSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            LS+APMM+WTDRHYRYMMR +TR T LYTEM+VD T++H++ +LD FLGHD  E+PLA+Q+GGS+P  +GE A + E+YG F+EIN+NV
Sbjct:   14 LSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDETIMHQKHNLDYFLGHDAVEYPLALQVGGSNPETLGEVAKMAESYGRFHEININV 102          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|813164848|ref|XP_012203484.1| (hypothetical protein SPRG_08867 [Saprolegnia parasitica CBS 223.65] >gi|641531872|gb|KDO25926.1| hypothetical protein SPRG_08867 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 132.88 bits (333), Expect = 5.398e-35
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 0
Query:   39 LSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            LS+APMM+WTDRHYR+MMR +TR T LYTEM+VD TLLH++++LD FLGHD  EHPLA+QLGG+D   +G  A + E YG F+EINLNV
Sbjct:   10 LSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQKDNLDYFLGHDNIEHPLALQLGGNDVESLGTVARMAETYGNFHEINLNV 98          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|1173948979|gb|OQR97057.1| (tRNA-dihydrouridine synthase [Achlya hypogyna])

HSP 1 Score: 132.494 bits (332), Expect = 9.337e-35
Identity = 59/89 (66.29%), Postives = 73/89 (82.02%), Query Frame = 0
Query:   39 LSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            LS+APMM+WTDRHYR+MMR +TR T LYTEM+VD TLLH++++ D FLGHD+ EHPLA+QLGG+D   +G  A L E YG F+EINLNV
Sbjct:   14 LSVAPMMDWTDRHYRFMMRQITRKTLLYTEMVVDQTLLHQQDNFDYFLGHDDIEHPLALQLGGNDVTSLGTVARLAEQYGRFHEINLNV 102          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|673032366|ref|XP_008870144.1| (hypothetical protein H310_06752 [Aphanomyces invadans] >gi|574474144|gb|ETW01146.1| hypothetical protein H310_06752 [Aphanomyces invadans])

HSP 1 Score: 132.109 bits (331), Expect = 1.565e-34
Identity = 57/89 (64.04%), Postives = 75/89 (84.27%), Query Frame = 0
Query:   39 LSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            LS+APMM+WTDRHYRYMMR +TR T LYTEM+VD T++H++ +LD FLGHD  E+PLA+Q+GGS+P  +GE A + E+YG F+EIN+NV
Sbjct:   14 LSVAPMMDWTDRHYRYMMRLITRRTLLYTEMVVDETIMHQKHNLDYFLGHDAVEYPLALQVGGSNPETLGEVAKMAESYGRFHEININV 102          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|566028856|gb|ETI51767.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|568054600|gb|ETM51379.1| hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 129.413 bits (324), Expect = 9.912e-34
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0
Query:   33 LKPAHTLSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            L P   LSIAPMM+WTDRHYR+MMR +T+ T L+TEM+VD TLLH++++LD FLGHD  E PLA+QLGG+    +G AA L ++YGGF EINLN 
Sbjct:    9 LPPVTRLSIAPMMDWTDRHYRFMMRMITKETLLFTEMVVDQTLLHQKKNLDYFLGHDPVEAPLALQLGGNSVEDLGAAAHLSQSYGGFCEINLNT 103          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|675186817|ref|XP_008902293.1| (hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|567966202|gb|ETK91656.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|567994919|gb|ETL45067.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568024175|gb|ETL98216.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568097569|gb|ETN12311.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|570332570|gb|ETO80518.1| hypothetical protein, variant 4 [Phytophthora parasitica P1976] >gi|570332571|gb|ETO80519.1| hypothetical protein, variant 5 [Phytophthora parasitica P1976] >gi|570956560|gb|ETP21551.1| hypothetical protein, variant 4 [Phytophthora parasitica CJ01A1] >gi|570956561|gb|ETP21552.1| hypothetical protein, variant 5 [Phytophthora parasitica CJ01A1] >gi|570991801|gb|ETP49460.1| hypothetical protein, variant 4 [Phytophthora parasitica P10297] >gi|570991802|gb|ETP49461.1| hypothetical protein, variant 5 [Phytophthora parasitica P10297])

HSP 1 Score: 129.413 bits (324), Expect = 1.013e-33
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0
Query:   33 LKPAHTLSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            L P   LSIAPMM+WTDRHYR+MMR +T+ T L+TEM+VD TLLH++++LD FLGHD  E PLA+QLGG+    +G AA L ++YGGF EINLN 
Sbjct:    9 LPPVTRLSIAPMMDWTDRHYRFMMRMITKETLLFTEMVVDQTLLHQKKNLDYFLGHDPVEAPLALQLGGNSVEDLGAAAHLSQSYGGFCEINLNT 103          
BLAST of EWM22921.1 vs. NCBI_GenBank
Match: gi|970652650|gb|KUF91269.1| (tRNA-dihydrouridine synthase 2 [Phytophthora nicotianae])

HSP 1 Score: 129.413 bits (324), Expect = 1.768e-33
Identity = 59/95 (62.11%), Postives = 74/95 (77.89%), Query Frame = 0
Query:   33 LKPAHTLSIAPMMEWTDRHYRYMMRGLTRHTQLYTEMIVDSTLLHRREDLDIFLGHDECEHPLAVQLGGSDPVQVGEAAALCEAYGGFNEINLNV 127
            L P   LSIAPMM+WTDRHYR+MMR +T+ T L+TEM+VD TLLH++++LD FLGHD  E PLA+QLGG+    +G AA L ++YGGF EINLN 
Sbjct:    4 LPPVTRLSIAPMMDWTDRHYRFMMRMITKETLLFTEMVVDQTLLHQKKNLDYFLGHDPVEAPLALQLGGNSVEDLGAAAHLSQSYGGFCEINLNT 98          
The following BLAST results are available for this feature:
BLAST of EWM22921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103617|gb|EWM22921.1|1.363e-94100.00trna-dihydrouridine synthase a [Nannochloropsis ga... [more]
gi|698779661|ref|XP_009822874.1|4.135e-3767.42hypothetical protein H257_01396 [Aphanomyces astac... [more]
gi|669164844|ref|XP_008617984.1|2.270e-3566.29hypothetical protein SDRG_13663 [Saprolegnia dicli... [more]
gi|673032372|ref|XP_008870147.1|2.556e-3564.04hypothetical protein, variant 3 [Aphanomyces invad... [more]
gi|813164848|ref|XP_012203484.1|5.398e-3566.29hypothetical protein SPRG_08867 [Saprolegnia paras... [more]
gi|1173948979|gb|OQR97057.1|9.337e-3566.29tRNA-dihydrouridine synthase [Achlya hypogyna][more]
gi|673032366|ref|XP_008870144.1|1.565e-3464.04hypothetical protein H310_06752 [Aphanomyces invad... [more]
gi|566028856|gb|ETI51767.1|9.912e-3462.11hypothetical protein, variant 2 [Phytophthora para... [more]
gi|675186817|ref|XP_008902293.1|1.013e-3362.11hypothetical protein, variant 2 [Phytophthora para... [more]
gi|970652650|gb|KUF91269.1|1.768e-3362.11tRNA-dihydrouridine synthase 2 [Phytophthora nicot... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7773rna7773Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications