rna7769, rna7769 (mRNA) Nannochloropsis gaditana

Overview
Namerna7769
Unique Namerna7769
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1141
Alignment locationCM002473.1:328824..329179 -

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Properties
Property NameValue
ProductRegulatory factor, effector, bacterial
Orig transcript idgnl|cribi|Naga_103945g1.9477.mrna
Orig protein idgnl|cribi|Naga_103945g1.9477
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:328824..329179 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103945g1gene7524Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7769rna7769-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22925.1cds7748Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7769 ID=rna7769|Name=rna7769|organism=Nannochloropsis gaditana|type=mRNA|length=1141bp
CACGGGCGCGGTCTGGCCGCCGCTCCCGTCCCACCACCACCCAAGGACCG
TTACGGGAGTCCCGGTAACGGTCCCGGTAACGGTCCCGACCCCCGTCGTC
CTCCCTCCTCGCCGCGCTCGCCCAGGTCCGCAAGCAGAAGGAGCCCCCTC
CAAGACCTGGGGCCCGACCCTCCACGCGGCCTCCTTCGTCCCGGCAGGGA
AGCCGCAAGTAACGGCTGTAACGGCCGTAACGGTTCGGAAAGCATTGCCT
TGGCACCTTACCTCTCTGCTCCCCGGAGCCGCCTGGATGTGCTTCCCAGT
GGTCTTACCAGAGGGCCGTCCACTGGCCTTGACGGGAAGAAAAGTCCACG
CGAGGGCGTGGAGGAAACGGTTTTGGTAACGGTTACCAACCGGCGTGCAA
CCGTCCCCAACGGTCGGCCCCGGTCACGACTAGGGAACCCGGCGGGGAGG
GAGGAGGAAGGAGGGGCGGGGGAGGAGGGGGAGAGAGTGGAGGAGGGAGG
AGGGAGCTCTTCCTCCTTCGCTTCGTCCTTTGTGGCCTCTTTGGCTTCGG
CCGTTTCGGATGACCTCGTGTCCCTGGCCAACGGTTGGCCGGCAACCGCC
TTGGAGAAACGGAAATTTGAAATTCAAAATGTGGCATCCTTTCCGGTGCG
CCGTCAACGCCAACTGCTGGATGAGGGACTGTTGGTGATCGTCCGCAACT
TTTTGGAGGGACCCCTCCCTCCCTCCCGCCCTCCCCCCCTCCCTCCCACC
CGTTCTCCCCGCCCCGCCAGCCGAGGGCCGGGACGGGACACGGGCATTTT
TCCTCCTCCCCTGCGTCCCCCCCTTCATTTGATCAACCTCTTCCTCAAGC
TCCTCCTCATCCTTCCTATCCAGCACCGGGATCTAACGGCCTCGGAGCTC
CCCCAGGCGGTTTTGCGTGTGATGATGGAGGGGGGGGGAAGGGCGGGAGC
GAGGGAGGGAGGGAAGATGGGCGGGAGGCAGGGCGCTTGGCGCAACGGTT
GCTGGAAGCCTGGAGCCGGTTTGTGATGGGAAGGGAAGGAGGTGGGGGGG
CGGAGTTAAAGGGGGAGGAGGTTGAGGGGGCAGGAAGGGCGGCCTGCTCG
TTGCCCGTGTTCCGTCGGATGGGATGAGGAGGGAGGGAGGG
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protein sequence of rna7769

>rna7769-protein ID=rna7769-protein|Name=rna7769|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREK
LQRLEEMLRKDSFLPKEGEGELEW
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mRNA from alignment at CM002473.1:328824..329179-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7769 ID=rna7769|Name=rna7769|organism=Nannochloropsis gaditana|type=mRNA|length=356bp|location=Sequence derived from alignment at CM002473.1:328824..329179- (Nannochloropsis gaditana)
CAGGCAAGGCCATGCAGTTCATCATGCCGGCCTCCTACTCCTCCCTCTCC
TCCCTCCCCGCCCCGACCGACGCGAGCGTGCGACTGAAGGAGGTGGCGGG
AAAGACGGTGGGGGTCCTGCGGTACAGGTGAAGCGGGAGGGAGAGAGGGA
GGTAGGGAGGGAGAAGGAGGGAGGGTGAAGTTCGCTGCATTATCTTCCTC
CTTACCTTTCTTCTTTCCTCTTCAGTGGGAAAGCCACAAATGTGATGACG
CGCGAGAAACTTCAACGACTGGAAGAGATGTTGCGAAAGGATTCTTTCCT
TCCGAAGGAGGGGGAGGGGGAGCTTGAGTGGTGAGGAGGGAGGGAGGGAG
GGAGGG
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Coding sequence (CDS) from alignment at CM002473.1:328824..329179-

>rna7769 ID=rna7769|Name=rna7769|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002473.1:328824..329179- (Nannochloropsis gaditana)
TGGGAAAGCCACAAATGTGATGACGCGCGAGAAACTTCAACGACTGGAAG
AGATGTTGCGAAAGGATTCTTTCCTTCCGAAGGAGGGGGAGGGGGAGCTT
GAGTGGTGAATGCAGTTCATCATGCCGGCCTCCTACTCCTCCCTCTCCTC
CCTCCCCGCCCCGACCGACGCGAGCGTGCGACTGAAGGAGGTGGCGGGAA
AGACGGTGGGGGTCCTGCGGTACAGTGGGAAAGCCACAAATGTGATGACG
CGCGAGAAACTTCAACGACTGGAAGAGATGTTGCGAAAGGATTCTTTCCT
TCCGAAGGAGGGGGAGGGGGAGCTTGAGTGGTGAATGCAGTTCATCATGC
CGGCCTCCTACTCCTCCCTCTCCTCCCTCCCCGCCCCGACCGACGCGAGC
GTGCGACTGAAGGAGGTGGCGGGAAAGACGGTGGGGGTCCTGCGGTACAG
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Synonyms
Publications