EWM22925.1, cds7748 (CDS) Nannochloropsis gaditana

Overview
NameEWM22925.1
Unique Namecds7748
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:329053..329168 -
Alignment locationCM002473.1:328846..328954 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM22925.1
ProductRegulatory factor, effector, bacterial
Orig transcript idgnl|cribi|Naga_103945g1.9477.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:329053..329168 -
CM002473.1supercontigCM002473.1:328846..328954 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011256Reg_factor_effector_dom
IPR006917SOUL_haem-bd
Homology
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|585103629|gb|EWM22925.1| (Regulatory factor, effector, bacterial [Nannochloropsis gaditana])

HSP 1 Score: 150.984 bits (380), Expect = 2.224e-46
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSFLPKEGEGELEW 74
            MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSFLPKEGEGELEW
Sbjct:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSFLPKEGEGELEW 74          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|702274239|ref|XP_010044056.1| (PREDICTED: uncharacterized protein LOC104433104 [Eucalyptus grandis])

HSP 1 Score: 58.5362 bits (140), Expect = 1.214e-8
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDS 62
            M+F++PA Y     +P P D  V ++E  G+  GV+R+SG AT  +TREK +RL E L +D 
Sbjct:  112 MRFVLPAKYGRAEEVPRPLDERVVVREEEGRKYGVVRFSGVATEGVTREKAERLREWLERDG 173          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|702274243|ref|XP_010044057.1| (PREDICTED: uncharacterized protein LOC104433106 [Eucalyptus grandis])

HSP 1 Score: 58.151 bits (139), Expect = 1.610e-8
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDS 62
            M+F++PA Y     +P P D  V ++E  G+  GV+R+SG AT  +TREK +RL E L +D 
Sbjct:  125 MRFVLPAKYGRAEEVPRPLDERVVVREEEGRKYGVVRFSGVATEGVTREKAERLREWLERDG 186          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|1179504764|ref|XP_020679537.1| (heme-binding-like protein At3g10130, chloroplastic [Dendrobium catenatum])

HSP 1 Score: 57.7658 bits (138), Expect = 1.802e-8
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSF 63
            MQF++PA+Y+     P PTD  VR++E   +  GV+R+SG AT   T ++ +RL   L +D +
Sbjct:  105 MQFVLPANYAKAEDAPRPTDERVRIREEGERKYGVVRFSGLATEATTADRAERLRRSLERDGY 167          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|1045376272|dbj|GAU38182.1| (hypothetical protein TSUD_264080 [Trifolium subterraneum])

HSP 1 Score: 56.225 bits (134), Expect = 2.299e-8
Identity = 23/63 (36.51%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSF 63
            MQF +P+ Y  +  +P P D  V ++EV G+  GV+++ G A++ + +EK+++L+  L KD F
Sbjct:   32 MQFTLPSMYEKVEQVPKPIDERVVIREVGGRKYGVVKFGGVASDEVVKEKVEKLKLSLEKDGF 94          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|1175846002|ref|XP_020576556.1| (heme-binding-like protein At3g10130, chloroplastic [Phalaenopsis equestris])

HSP 1 Score: 57.3806 bits (137), Expect = 2.682e-8
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSF 63
            MQF++PA Y+     P PTD  VR++EV  +  GV+R+SG AT     ++ ++L + L +D +
Sbjct:  105 MQFVLPAKYARAEDAPQPTDERVRIREVGERKYGVVRFSGVATETTAADRAEKLRKSLERDGY 167          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|1208397176|ref|NP_001235669.2| (SOUL heme-binding family protein [Glycine max])

HSP 1 Score: 56.9954 bits (136), Expect = 4.524e-8
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSF 63
            MQF++PA Y      P PTD  V ++E   +  GV+++ G A+  + REK+++L E L KD F
Sbjct:  119 MQFVLPAVYGKAEEAPKPTDERVVIREEGERKYGVVKFGGVASEQVVREKVEKLRESLEKDGF 181          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|734306683|gb|KHM98940.1| (Heme-binding-like protein, chloroplastic [Glycine soja])

HSP 1 Score: 56.9954 bits (136), Expect = 4.708e-8
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSF 63
            MQF++PA Y      P PTD  V ++E   +  GV+++ G A+  + REK+++L E L KD F
Sbjct:  111 MQFVLPAVYGKAEEAPKPTDERVVIREEGERKYGVVKFGGVASEQVVREKVEKLRESLEKDGF 173          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|1189383452|gb|OSX70781.1| (hypothetical protein BU14_0668s0002 [Porphyra umbilicalis])

HSP 1 Score: 55.8398 bits (133), Expect = 6.234e-8
Identity = 25/63 (39.68%), Postives = 39/63 (61.90%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSF 63
            M+F++PA Y+++S  P PTD+ V L  VA  TVGV RYSG ++     ++++ L   L +D  
Sbjct:   76 MRFLLPAKYAAVSDAPVPTDSKVHLTTVAPHTVGVRRYSGNSSLATCGDEVKALHAALARDGV 138          
BLAST of EWM22925.1 vs. NCBI_GenBank
Match: gi|565475578|ref|XP_006295430.1| (hypothetical protein CARUB_v10024529mg [Capsella rubella] >gi|482564138|gb|EOA28328.1| hypothetical protein CARUB_v10024529mg [Capsella rubella])

HSP 1 Score: 56.6102 bits (135), Expect = 7.482e-8
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0
Query:    1 MQFIMPASYSSLSSLPAPTDASVRLKEVAGKTVGVLRYSGKATNVMTREKLQRLEEMLRKDSF 63
            MQF++P+ Y+     P PTDA V ++E  G+  GV+++SG A+  +  EK+++L   L KD F
Sbjct:  133 MQFLLPSIYTKPEEAPRPTDARVVIREEGGRKYGVVKFSGTASESVVSEKVKKLTSDLEKDGF 195          
The following BLAST results are available for this feature:
BLAST of EWM22925.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585103629|gb|EWM22925.1|2.224e-46100.00Regulatory factor, effector, bacterial [Nannochlor... [more]
gi|702274239|ref|XP_010044056.1|1.214e-843.55PREDICTED: uncharacterized protein LOC104433104 [E... [more]
gi|702274243|ref|XP_010044057.1|1.610e-843.55PREDICTED: uncharacterized protein LOC104433106 [E... [more]
gi|1179504764|ref|XP_020679537.1|1.802e-839.68heme-binding-like protein At3g10130, chloroplastic... [more]
gi|1045376272|dbj|GAU38182.1|2.299e-836.51hypothetical protein TSUD_264080 [Trifolium subter... [more]
gi|1175846002|ref|XP_020576556.1|2.682e-838.10heme-binding-like protein At3g10130, chloroplastic... [more]
gi|1208397176|ref|NP_001235669.2|4.524e-839.68SOUL heme-binding family protein [Glycine max][more]
gi|734306683|gb|KHM98940.1|4.708e-839.68Heme-binding-like protein, chloroplastic [Glycine ... [more]
gi|1189383452|gb|OSX70781.1|6.234e-839.68hypothetical protein BU14_0668s0002 [Porphyra umbi... [more]
gi|565475578|ref|XP_006295430.1|7.482e-839.68hypothetical protein CARUB_v10024529mg [Capsella r... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7769rna7769Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications