rna7765, rna7765 (mRNA) Nannochloropsis gaditana

Overview
Namerna7765
Unique Namerna7765
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1480
Alignment locationCM002473.1:310712..311772 +

Link to JBrowse

Properties
Property NameValue
ProductIntegrase/recombinase
Orig transcript idgnl|cribi|Naga_101356g2.2126.mrna
Orig protein idgnl|cribi|Naga_101356g2.2126
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:310712..311772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101356g2gene7519Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7765rna7765-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22929.1cds7744Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7765 ID=rna7765|Name=rna7765|organism=Nannochloropsis gaditana|type=mRNA|length=1480bp
ATGGCCGCGGCACCGAACCCGGAACCGATTTTCCACGGGGACGAGGCGCA
GGCGCAGGGCGGGAGGGAGGGCGGGCGGGAGGTGACGAGCGTGGTGGAGG
CTCGGGCGGAAATTGCCCGGCTGGAAGGCCTGGTGAGGCGCTTGCGGCGC
GAGGCGGAGGAAAACGACCACGGGGAACTGATCAACCGGTTGGTGAGCGT
GGAGGCGGACCGGACGCGGGAATTGAACGCGGTCAAGGCCGTGTTGCTCC
AGACGGGGCAAAACTACCCGGATGTGGTCAGAACCAAATGGATGTGCGAG
GCGACGGAAACCGAGGTGGCGGCGGCCTTGCGGGCCAACGGCAGCTCCCG
TAACGGCAGCTCGAGTAACAGCGGCTTGAGCAACGGCAGCGGTCGAAGGG
GGCTTCGAAGTCGGGAGGAGGGCGGGGCCAGGGAAGGGAGGGAGGGGCTT
GACGAGGAAGGCGGCTCTTCCCTCCCTCCCTCCCTCCCTTCCTCCACCTC
CTTGACTGCGGATGCATGCGACCGGGTATCCGACGTCTTCCAATCTCATC
AATCCTCACCGCGGGACCCGTACCAGCCCGGACATGCGCGGGCTGCCTCC
TCCCATTCAAATTCAAATTCAAATTCAAATTCAAACATCTCCGCCCACTT
AACGGACGAGGGCTTCCGGCGAGTCATGACCCGGATAGATGCCACCATCC
GCGATGCCTCTTTCGACCCGTTGATGAGGCAGGAAGGCCGCATCGTCGGG
GTGGATTGGGACCACATGGTCTTAAGGAATCTGCAAGAGGAGTACGGGCG
GGCAATGGCCGAGCTGGTGGTGGCGAAGAAGAAGGAGGTGGAACGCTACT
GCCCCTCTGGTAGCTATCCGGTCCTGGTGCTGTGGGCGGGGGAGGAAGGA
AGAGGAGGGGGGAGGGAGGGCAGGGCCAGGGGCGGGAGCTGCGGCTGTTG
GAGGTGGTGGTGCGCCTCGTGTCTGCCTTGAAGACCTACCGGAACCGTTT
GAAAAGGAAACGGCTGAATTTCCGTTTGGAGGAGGGAAAGTTCGGTTCGG
AGAAAGTGGCAGCCGAGTTGCGACGCGTGTTGGATGGGGAGGGAAGGGAC
GCCGGAGGAGGTGGCGCCGGTGACGTGGGCAGGTTGATCGACCTCCTCTT
CCGGGTACCTTCCCTCAGGAGCAGCGACGTCCCCCCCGACAACGGTAGCC
CCGGCGCCCCCCCTATGCTTCCCTCCCCCGCCCGAACCTCCCCCGAGCCC
CTTCCCATCCCCTCCCGACGCCGCCTCCCTCCCCCTCCTCCCTCACCGTC
CGTCCTTCCCGAACCTCCCTCCGTCCGCGCCCCGTCGCCACCCCTCCTCT
CCGCCGCCCTCCGCCACGGCTACATTCACTGGCTTCTCCACCGTTTTCCT
TCCCTGACCTCCCAAACCGCAAGCGTGCAAGTCACCTGGGCCCAAAACGC
CCTCCGCCGCGTCCTCCCCTCCCTCTACCC
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protein sequence of rna7765

>rna7765-protein ID=rna7765-protein|Name=rna7765|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
GQRRALGRSGGDGGGGGGGGGGGGGRRRKRRRICHSLALSCMARPVWEEF
QGWMAAEKALSPSTSHSYSKRVARFLIDMEEGREQAEKVMNREGARAYVE
RKWEVASAVASSALRVKMNAWNHFLNYLGLGGGDGKEDGKGGQAGVGRKE
EADGEDGESDGVGDGEGVEKQGAA
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mRNA from alignment at CM002473.1:310712..311772+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7765 ID=rna7765|Name=rna7765|organism=Nannochloropsis gaditana|type=mRNA|length=1061bp|location=Sequence derived from alignment at CM002473.1:310712..311772+ (Nannochloropsis gaditana)
GGGCAACGTCGTGCCCTAGGTAGgagcggaggcgatggcggagggggagg
gggaggggggggaggaggaggagggagaagaaggaagcgccGCCGTATCT
gccactccctcgccttgtCCTGTATGGCCCGTCCCGTCTGGGAGGAATTC
CAAGGGTGGATGGCGGCAGAGAAGGCACTCTCCCCCAGCACCTCTCACAG
TTACTCCAAGCGCGTGGCTCGTTTTTTGATAGAtatggaggaaggacggg
agcaggcggagaaAGTGATGAATAGGGAAGGGGCGCGGGCATATGTGGAA
AGGAAGTGGGAGGTGGCGTCGGCAGTGGCAAGTTCGGCGTTGCGGGTGAA
AATGAACGCGTGGAACCATTTTTTGAACTACCTCGGgttagggggggggg
atgggaaggaggacgggaaggggggacaggCAGGCgtgggacggaaggag
gaagccgacggggaggatggggagagcGACGGGGTCGGTGAtggagaggg
cgtggagaagcagggggcCGCTTGAGCGGAGGGGCGAATTGGACGGGAGC
CAGCTGACGTGATGGgattggagggggggaggggagaaggttcgggaggg
gaggggagtggaagagggatgtGGCACCAAGAGGGCAGTGCATGCACCTG
CCCGCACTCCTGGTTTAAGGTGATGGGTGCAGAGAGGGTGGCAGtgatga
aaatggaagaaattGGGCGGTGGGAGATGTCtgccctccaacctcccttc
cttagGAGGTGCATTGGGCGCATATGGCGTGAAAAAAGAGGCTGGAGTCG
GCGGGAATCGAacagagggagcgaggggcgTGTCACTGTAGCCTATGCTC
TGTTCGACGAGATCAGAACCCTGACTACCACAAGCACAGCAATCTCTAAA
GTACTGAGAAACCAGATTGCGAGTGTGTGGACGTGATGCAACGAAGGACG
AAGGACACCATCAGGAATGATACCTCTCTGGTTGGATTTTGTTTTGTTGA
GTCCCCCTTTAATGACCACCTTTTTTTCTGGCGTTCATGTGGGACTGGTG
AAGGAAATCCC
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Coding sequence (CDS) from alignment at CM002473.1:310712..311772+

>rna7765 ID=rna7765|Name=rna7765|organism=Nannochloropsis gaditana|type=CDS|length=525bp|location=Sequence derived from alignment at CM002473.1:310712..311772+ (Nannochloropsis gaditana)
GGGCAACGTCGTGCCCTAGGTAGgagcggaggcgatggcggagggggagg
gggaggggggggaggaggaggagggagaagaaggaagcgccGCCGTATCT
gccactccctcgccttgtCCTGTATGGCCCGTCCCGTCTGGGAGGAATTC
CAAGGGTGGATGGCGGCAGAGAAGGCACTCTCCCCCAGCACCTCTCACAG
TTACTCCAAGCGCGTGGCTCGTTTTTTGATAGAtatggaggaaggacggg
agcaggcggagaaAGTGATGAATAGGGAAGGGGCGCGGGCATATGTGGAA
AGGAAGTGGGAGGTGGCGTCGGCAGTGGCAAGTTCGGCGTTGCGGGTGAA
AATGAACGCGTGGAACCATTTTTTGAACTACCTCGGgttagggggggggg
atgggaaggaggacgggaaggggggacaggCAGGCgtgggacggaaggag
gaagccgacggggaggatggggagagcGACGGGGTCGGTGAtggagaggg
cgtggagaagcagggggcCGCTTGA
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Synonyms
Publications