EWM22929.1, cds7744 (CDS) Nannochloropsis gaditana

Overview
NameEWM22929.1
Unique Namecds7744
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002473.1:310712..311236 +

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Properties
Property NameValue
Start range310712
Start range.
Protein idEWM22929.1
ProductIntegrase/recombinase
Partialtrue
Orig transcript idgnl|cribi|Naga_101356g2.2126.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:310712..311236 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023109Integrase_recombinase_N
Homology
[Close]
BLAST of EWM22929.1 vs. NCBI_GenBank
Match: gi|585103642|gb|EWM22929.1| (Integrase/recombinase, partial [Nannochloropsis gaditana])

HSP 1 Score: 338.576 bits (867), Expect = 1.618e-117
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 
Query:    1 GQRRALGRSGGDGGGGGGGGGGGGGRRRKRRRICHSLALSCMARPVWEEFQGWMAAEKALSPSTSHSYSKRVARFLIDMEEGREQAEKVMNREGARAYVERKWEVASAVASSALRVKMNAWNHFLNYLGLGGGDGKEDGKGGQAGVGRKEEADGEDGESDGVGDGEGVEKQGAA 174
            GQRRALGRSGGDGGGGGGGGGGGGGRRRKRRRICHSLALSCMARPVWEEFQGWMAAEKALSPSTSHSYSKRVARFLIDMEEGREQAEKVMNREGARAYVERKWEVASAVASSALRVKMNAWNHFLNYLGLGGGDGKEDGKGGQAGVGRKEEADGEDGESDGVGDGEGVEKQGAA
Sbjct:    1 GQRRALGRSGGDGGGGGGGGGGGGGRRRKRRRICHSLALSCMARPVWEEFQGWMAAEKALSPSTSHSYSKRVARFLIDMEEGREQAEKVMNREGARAYVERKWEVASAVASSALRVKMNAWNHFLNYLGLGGGDGKEDGKGGQAGVGRKEEADGEDGESDGVGDGEGVEKQGAA 174
The following BLAST results are available for this feature:
BLAST of EWM22929.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585103642|gb|EWM22929.1|1.618e-117100.00Integrase/recombinase, partial [Nannochloropsis ga... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7765rna7765Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications