rna7763, rna7763 (mRNA) Nannochloropsis gaditana

Overview
Namerna7763
Unique Namerna7763
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length291
Alignment locationCM002473.1:299184..300246 +

Link to JBrowse

Properties
Property NameValue
Productc-5 sterol desaturase
Orig transcript idgnl|cribi|Naga_100461g3.9044.mrna
Orig protein idgnl|cribi|Naga_100461g3.9044
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:299184..300246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100461g3gene7517Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7763rna7763-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22932.1cds7742Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7763 ID=rna7763|Name=rna7763|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGCTACATGTTCACCATTTTTTCGTGCCGTCGTACATCCATGTGATCCA
CCTATTCTATATCCGTCTATATTGCCATCTTCGTCCATTTGACCTGCGCT
TCGGCGGAAATGGCGGGCAAACCAACCAAGTCCGGGTTTACACAAACCAG
GCACCTTTACTAAAAAGTGCCTTAATTCCAATATACTATGGTTCTGATGT
TACCACGACACTGCACGCGTGTTCTTTGTGGGTTTTGTTTCTGGGCATCT
TCCTCTTTTTTGGCGGGAAAACCGACACTCTGACATTCTGA
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protein sequence of rna7763

>rna7763-protein ID=rna7763-protein|Name=rna7763|organism=Nannochloropsis gaditana|type=polypeptide|length=293bp
MASTAFLLLESLFLTGENDLFLRGAGGGAFLLWNAHTWLSHHFIAWGLLV
LAGLEILACLVFAFGRLRRVPSIPMRGKHLDTLDARDLGFIAFNKLATTL
FSYHLLRFLWLSKGPALVAWRVEEMTWQNTCLALPLLFVVYDFAYTLFHR
ALHHRALYKHIHKHHHRQKAPSRGNTDAVNVHPVEFVAGEYNHLAAIYLV
SRFLLPVHALTALAFIVLGGFLASLNHTRFDIKTPGVLSPVYQVRYHDVH
HWFPESNYGQYLMLWDHIFGSFKPYPEEKGAVSGGGGGGGKKE
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mRNA from alignment at CM002473.1:299184..300246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7763 ID=rna7763|Name=rna7763|organism=Nannochloropsis gaditana|type=mRNA|length=1063bp|location=Sequence derived from alignment at CM002473.1:299184..300246+ (Nannochloropsis gaditana)
CACACACAGGGAGCCTTGTAGTGCGCCGTGCACGTTTTATTCCCGTGAGC
CTCCAGCCATTTCATGGCATCgaccgccttcctcctcctcgaatCACTAT
TCCTTACTGGAGAGAATGACCTTTTTCTAAGAGGCGCCGGTGGGGGGGCT
TTTCTTCTGTGGAATGCACACACCTGGCTTTCGCACCATTTCATCGCATG
GGGACTCCTGGTCCTTGCAGGTTTGGAAATTTTAGCCTGTCTGGTCTTCG
CCTTCGGGCGTCTGCGACGGGTGCCGTCGATTCCCATGCGCGGGAAGCAT
CTTGATACACTGGACGCGCGGGATTTAGGCTTCATCGCCTTCAATAAACT
CGCTACCACCCTCTTTTcctaccacctcctccgtttcctctGGCTTTCCA
AGGGTCCTGCCCTAGTAGCAtggcgggtggaggaaatgACATGGCAAAAC
ACCTGCCTGGCCCTTCCGTTGCTCTTCGTCGTCTACGACTTTGCCTACAC
CCTGTTTCAccgcgccctccaccatcggGCCTTGTACAAACACATCCACA
AACATCACCATCGGCAGAAAGCCCCCTCCCGAGGTAATACGGACGCAGTG
AACGTGCACCCCGTGGAATTCGTGGCGGGCGAGTACAACCATCTGGCCGC
CATTTACCTCgtctcccgcttcctcctccccgtccatgCCCTCACCGCCT
TGGCCTTCATTGTCCTCGGcggcttcctcgcctccctgaACCACACGCGC
TTCGACATCAAAACACCTGGGGTACTCAGCCCCGTCTATCAAGTCCGGTA
CCACGACGTCCATCACTGGTTCCCTGAGTCCAACTATGGGCAGTACCTGA
TGCTCTGGGACCATATCTTCGGTTCTTTCAAaccctacccggaggagaag
ggggcggtgtccgggggaggcgggggggggggcaagaaagAGTGAGGGAG
GCAAGTGGAAGGGGAGCGACGCCTTGAcgcaaaaggaagaggtaAGTCAG
CGAGAAAAGTAAAGTAAATTACCATTTTTGACTAAAAATCAAGATGTGTT
GATAGTGCAGTCT
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Coding sequence (CDS) from alignment at CM002473.1:299184..300246+

>rna7763 ID=rna7763|Name=rna7763|organism=Nannochloropsis gaditana|type=CDS|length=882bp|location=Sequence derived from alignment at CM002473.1:299184..300246+ (Nannochloropsis gaditana)
ATGGCATCgaccgccttcctcctcctcgaatCACTATTCCTTACTGGAGA
GAATGACCTTTTTCTAAGAGGCGCCGGTGGGGGGGCTTTTCTTCTGTGGA
ATGCACACACCTGGCTTTCGCACCATTTCATCGCATGGGGACTCCTGGTC
CTTGCAGGTTTGGAAATTTTAGCCTGTCTGGTCTTCGCCTTCGGGCGTCT
GCGACGGGTGCCGTCGATTCCCATGCGCGGGAAGCATCTTGATACACTGG
ACGCGCGGGATTTAGGCTTCATCGCCTTCAATAAACTCGCTACCACCCTC
TTTTcctaccacctcctccgtttcctctGGCTTTCCAAGGGTCCTGCCCT
AGTAGCAtggcgggtggaggaaatgACATGGCAAAACACCTGCCTGGCCC
TTCCGTTGCTCTTCGTCGTCTACGACTTTGCCTACACCCTGTTTCAccgc
gccctccaccatcggGCCTTGTACAAACACATCCACAAACATCACCATCG
GCAGAAAGCCCCCTCCCGAGGTAATACGGACGCAGTGAACGTGCACCCCG
TGGAATTCGTGGCGGGCGAGTACAACCATCTGGCCGCCATTTACCTCgtc
tcccgcttcctcctccccgtccatgCCCTCACCGCCTTGGCCTTCATTGT
CCTCGGcggcttcctcgcctccctgaACCACACGCGCTTCGACATCAAAA
CACCTGGGGTACTCAGCCCCGTCTATCAAGTCCGGTACCACGACGTCCAT
CACTGGTTCCCTGAGTCCAACTATGGGCAGTACCTGATGCTCTGGGACCA
TATCTTCGGTTCTTTCAAaccctacccggaggagaagggggcggtgtccg
ggggaggcgggggggggggcaagaaagAGTGA
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Synonyms
Publications