rna7756, rna7756 (mRNA) Nannochloropsis gaditana

Overview
Namerna7756
Unique Namerna7756
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1670
Alignment locationCM002473.1:282757..284020 -

Link to JBrowse

Properties
Property NameValue
Product3-isopropylmalate dehydrogenase
Orig transcript idgnl|cribi|Naga_101273g1.10778.mrna
Orig protein idgnl|cribi|Naga_101273g1.10778
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:282757..284020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101273g1gene7510Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7756rna7756-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22938.1cds7735Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7756 ID=rna7756|Name=rna7756|organism=Nannochloropsis gaditana|type=mRNA|length=1670bp
TCCCAAGGATCTTTAGTGTGGACGACATGCAATTCTCATGTTTTCTTGTA
TGTTTATTTGCTACGATGGAAGGTAGTGTGTCGAAAGACCCTGTTGGGGG
AGGAAGAGCCCCTAGCGACAACGTGTTGTGTTGTCTGCAAGCTTGCAGCT
CCCACGCCCCTCCGCATGAGTACATGGGGAATTTCAGCATGTCACACGTC
TTTGTTCGGTTTTGATACGTCGTTCAATTTCTTTGCACGCTCATTTAAGA
GATCTTTCCTTCAGTACAGGTTTATTTGCTCAAGAGTCTACTTTCCCTTC
CACAAGATACTTCACGCCACAAGAATGCAGCAGCAGCGGTTGGTTACAAT
TCTGGGCTGCTTGTCAGTGTTGATAGGCGGAAGCAGTGTACGTACACGTT
TGGAAGATGCTATATATGAGGTGGTAGATGCATGCTCGTTTCAGATGGTT
GTAATTTCAGGAAGCGGGTGGGGGGGGCCCTCCCCTTCAATGGCGTCCAG
GGACTGCTCGCTTTCCTCTTCTTCCCTTTCTTCGAATGACTGTGGACAGA
TACATGACACGCTTTCCTCTTCGAACTGCGTTGAGTCCTGACGCGCAGTT
GCAGTGCCCAGCTTCTTACCGACTTCCCTCCTTTCCTCCCTCCCTCTTTC
CCTCCCTCCCTTTTTTTAGACGGTTTTGGGCTTCGTATGGGCCCCCGGGG
CCTCTCCCCTCTAACACGCAGCGGCCCAACCTCCCCTCCCGCCTCCCCTC
CCTCCCGCCTTTTCGCTCAAGCCCTGACTCGGCCTGCGGAGAGCACGGAC
CAGGGGACGCGCGTGCTGGCGGAGTTGAAAAGCGCGGCGCAAGCCGGCGA
TAGCGCCAAGGCCTTGGACCTGCTCAAGTCGCTGGACGATGCCGCCGTGC
CTAAGACCGTGGTGCACTTCAACCGCGCCCTTAAGGCCTGCGTGCAGGGG
AAGGCGCTGGACCAGCTACCGGGGGTGTTGGAGCAAATGAACGCGAGCGG
GACGGCGTGGGACGAGACGACCGTCAAGCTCTTGGTGAGCACCTATGCCG
AGCAAGGAAAGTTGGCGGAGGCCCTGGACGTGTTCGAGCAGGCCCGGGAG
GACGAGTTGATCGGCACGGTGGACCGGGCTTTGTACGACGTGGTGATCGG
CGCCTATCGCCGAACGGACGCCCTCGAGAAGGCGATGGACTTGTGCGACG
AGATGCGGTCCCTGCGCCTAGCCCCGACCAAGGAGGGGTATGCCTTCATT
GCCACGGTGGCGGTGCGGGACGGGAAGACCTACTTGATCGCCCGGACCCT
GGAGACGATGCGGGCGGAAGGTTTCGAGGAGGGGGAGGTAGCGTACGTGC
AGAAAGTGATCGAGGAGGAGCTCCCAGAGGGACTCAAGCATCAGGTGGGG
GGGAAGGTGGTGGCGCCAGCATGAGGAGAGAAGGCGAGCCGGGGGGGGGA
AGGAGGGAAAGGGAGGGACGGAGGAAGTGATGCAGGGCATCACTTATTTT
ATATATAGACGAGGGAGGGTTCAGGCGGGAAGGGAGGCGGCACTCGGTGG
CGATGAGTGAGGAGGGAGGAAGGGCGGGAAGGAGGGAAGGAGGGAAGGAG
GGAAGGAAGAAAGGAGGACTTGTGTGTCAGACGGGCGTGAGGGGGTTGCG
TGTGTAGGAGATAGAGGAAG
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protein sequence of rna7756

>rna7756-protein ID=rna7756-protein|Name=rna7756|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MTNAEARRPLHSSLLSLLLLLPSSFLTARAFLHPSFPSLSSTRMQTPTGR
RHRTEGVRMAVGAKGEYAVTLLPGDGIGPEIMTATVGVLEVVAAKASFKF
KFQDALIGGAALDAMDDPFPDTSLQACQSSDSVLLACIGGYKWDKNPREK
RPETGLLKMRKTLGLFANLRPAKVLPQLVSASTLKPEVVSGVDIMVVREL
TGDVYFGTPKGIRTGSDGEREGFNNMIYKESEIRRIAQVAYGVAEKRGKK
LCSVDKANVLDVSQLWREVVTEEGLRHHPDVALEHMYVDNAAMQLIRNPK
QFDTIVCGNLFGDILSDEASMLVGSLGMLPSASLGDPRGPGVFEPCHGSA
PDIAGEDKANPLAMILSAAMMLRYDLSQPQAAEALEAAVERT
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mRNA from alignment at CM002473.1:282757..284020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7756 ID=rna7756|Name=rna7756|organism=Nannochloropsis gaditana|type=mRNA|length=1264bp|location=Sequence derived from alignment at CM002473.1:282757..284020- (Nannochloropsis gaditana)
TCAGGTCGATGACTAACGCGGAAGCCCGTCGTCCCCTTCACTCCTCCCTC
CTCTCCCTCCTCCTTTTGCTGCCAAGCAGCTTCCTGACTGCGCGTGCTTT
CTTGCACCCGTCGTTTCCTTCCCTCTCCTCCACCCGTATGCAAACGCCCA
CCGGCCGTCGCCACCGGACCGAGGGGGTGCGCATGGCAGTCGGCGCCAAA
GGCGAGTACGCGGTCACCTTGCTCCCTGGTGATGGAATCGGGCCCGAGAT
CATGACGGCCACGGTCGGGGTGCTGGAAGTGGTGGCTGCCAAGGCAAGCT
TCAAGTTCAAGTTTCAAGACGCCTTGATTGGCGGGGCGGCCTTGGATGCC
ATGGACGACCCTTTCCCCGACACATCCCTCCAAGCCTGCCAGTCCAGCGA
CTCGGTCCTATTGGCCTGCATCGGCGGGTACAAATGGGACAAGAACCCGC
GGGAGAAACGTCCGGAAACGGGGTTGTTGAAAATGAGGAAGACCTTGGGT
TTATTCGCCAATCTACGCCCGGCCAAGGTCCTCCCTCAGCTCGTGTCTGC
CTCCACGTTGAAGCCGGAGGTGGTCTCGGGAGTGGACATCATGGTGGTGC
GGGAGTTGACCGGGGACGTGTACTTTGGCACGCCCAAGGGGATCCGAACA
GGGTCGGACGGCGAGCGGGAGGGCTTCAACAACATGATCTACAAGGAGAG
TGAGATCCGGCGCATCGCCCAAGTGGCCTACGGCGTGGCCGAAAAACGCG
GGAAAAAATTGTGCTCGGTGGATAAGGCCAACGTTCTGGACGTCTCCCAG
CTCTGGCGGGAGGTGGTGACCGAGGAAGGGCTCCGGCACCACCCCGACGT
CGCCTTGGAGCACATGTACGTGGACAACGCGGCCATGCAGCTCATCCGGA
ACCCGAAGCAGTTCGACACCATCGTCTGCGGGAATTTGTTCGGGGACATC
CTCTCGGACGAGGCCTCCATGCTCGTGGGCTCCCTGGGAATGCTCCCCTC
GGCGTCCCTTGGCGACCCTCGAGGCCCCGGCGTCTTCGAACCCTGCCACG
GATCCGCCCCCGACATCGCGGGGGAGGACAAGGCGAACCCGTTGGCGATG
ATCCTCTCGGCGGCGATGATGCTCCGCTACGACTTGAGTCAGCCCCAGGC
CGCGGAGGCCTTGGAGGCGGCCGTGGAGCGGGTCTTGGGTGAGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGCGGGCGGGAGGGAGGGAGGGAGCTG
ACAGGCAGACATGA
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Coding sequence (CDS) from alignment at CM002473.1:282757..284020-

>rna7756 ID=rna7756|Name=rna7756|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at CM002473.1:282757..284020- (Nannochloropsis gaditana)
ACATGAATGACTAACGCGGAAGCCCGTCGTCCCCTTCACTCCTCCCTCCT
CTCCCTCCTCCTTTTGCTGCCAAGCAGCTTCCTGACTGCGCGTGCTTTCT
TGCACCCGTCGTTTCCTTCCCTCTCCTCCACCCGTATGCAAACGCCCACC
GGCCGTCGCCACCGGACCGAGGGGGTGCGCATGGCAGTCGGCGCCAAAGG
CGAGTACGCGGTCACCTTGCTCCCTGGTGATGGAATCGGGCCCGAGATCA
TGACGGCCACGGTCGGGGTGCTGGAAGTGGTGGCTGCCAAGGCAAGCTTC
AAGTTCAAGTTTCAAGACGCCTTGATTGGCGGGGCGGCCTTGGATGCCAT
GGACGACCCTTTCCCCGACACATCCCTCCAAGCCTGCCAGTCCAGCGACT
CGGTCCTATTGGCCTGCATCGGCGGGTACAAATGGGACAAGAACCCGCGG
GAGAAACGTCCGGAAACGGGGTTGTTGAAAATGAGGAAGACCTTGGGTTT
ATTCGCCAATCTACGCCCGGCCAAGGTCCTCCCTCAGCTCGTGTCTGCCT
CCACGTTGAAGCCGGAGGTGGTCTCGGGAGTGGACATCATGGTGGTGCGG
GAGTTGACCGGGGACGTGTACTTTGGCACGCCCAAGGGGATCCGAACAGG
GTCGGACGGCGAGCGGGAGGGCTTCAACAACATGATCTACAAGGAGAGTG
AGATCCGGCGCATCGCCCAAGTGGCCTACGGCGTGGCCGAAAAACGCGGG
AAAAAATTGTGCTCGGTGGATAAGGCCAACGTTCTGGACGTCTCCCAGCT
CTGGCGGGAGGTGGTGACCGAGGAAGGGCTCCGGCACCACCCCGACGTCG
CCTTGGAGCACATGTACGTGGACAACGCGGCCATGCAGCTCATCCGGAAC
CCGAAGCAGTTCGACACCATCGTCTGCGGGAATTTGTTCGGGGACATCCT
CTCGGACGAGGCCTCCATGCTCGTGGGCTCCCTGGGAATGCTCCCCTCGG
CGTCCCTTGGCGACCCTCGAGGCCCCGGCGTCTTCGAACCCTGCCACGGA
TCCGCCCCCGACATCGCGGGGGAGGACAAGGCGAACCCGTTGGCGATGAT
CCTCTCGGCGGCGATGATGCTCCGCTACGACTTGAGTCAGCCCCAGGCCG
CGGAGGCCTTGGAGGCGGCCGTGGAGCGGACATGAATGACTAACGCGGAA
GCCCGTCGTCCCCTTCACTCCTCCCTCCTCTCCCTCCTCCTTTTGCTGCC
AAGCAGCTTCCTGACTGCGCGTGCTTTCTTGCACCCGTCGTTTCCTTCCC
TCTCCTCCACCCGTATGCAAACGCCCACCGGCCGTCGCCACCGGACCGAG
GGGGTGCGCATGGCAGTCGGCGCCAAAGGCGAGTACGCGGTCACCTTGCT
CCCTGGTGATGGAATCGGGCCCGAGATCATGACGGCCACGGTCGGGGTGC
TGGAAGTGGTGGCTGCCAAGGCAAGCTTCAAGTTCAAGTTTCAAGACGCC
TTGATTGGCGGGGCGGCCTTGGATGCCATGGACGACCCTTTCCCCGACAC
ATCCCTCCAAGCCTGCCAGTCCAGCGACTCGGTCCTATTGGCCTGCATCG
GCGGGTACAAATGGGACAAGAACCCGCGGGAGAAACGTCCGGAAACGGGG
TTGTTGAAAATGAGGAAGACCTTGGGTTTATTCGCCAATCTACGCCCGGC
CAAGGTCCTCCCTCAGCTCGTGTCTGCCTCCACGTTGAAGCCGGAGGTGG
TCTCGGGAGTGGACATCATGGTGGTGCGGGAGTTGACCGGGGACGTGTAC
TTTGGCACGCCCAAGGGGATCCGAACAGGGTCGGACGGCGAGCGGGAGGG
CTTCAACAACATGATCTACAAGGAGAGTGAGATCCGGCGCATCGCCCAAG
TGGCCTACGGCGTGGCCGAAAAACGCGGGAAAAAATTGTGCTCGGTGGAT
AAGGCCAACGTTCTGGACGTCTCCCAGCTCTGGCGGGAGGTGGTGACCGA
GGAAGGGCTCCGGCACCACCCCGACGTCGCCTTGGAGCACATGTACGTGG
ACAACGCGGCCATGCAGCTCATCCGGAACCCGAAGCAGTTCGACACCATC
GTCTGCGGGAATTTGTTCGGGGACATCCTCTCGGACGAGGCCTCCATGCT
CGTGGGCTCCCTGGGAATGCTCCCCTCGGCGTCCCTTGGCGACCCTCGAG
GCCCCGGCGTCTTCGAACCCTGCCACGGATCCGCCCCCGACATCGCGGGG
GAGGACAAGGCGAACCCGTTGGCGATGATCCTCTCGGCGGCGATGATGCT
CCGCTACGACTTGAGTCAGCCCCAGGCCGCGGAGGCCTTGGAGGCGGCCG
TGGAGCGG
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Synonyms
Publications